Wall clock time and date at job start Tue Mar 31 2020 00:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33001 * 119.99706 * 2 1 4 4 C 1.47103 * 119.99860 * 172.96203 * 3 2 1 5 5 O 1.21617 * 119.99992 * 354.03095 * 4 3 2 6 6 N 1.34773 * 119.99936 * 174.03414 * 4 3 2 7 7 C 1.46501 * 119.99895 * 179.97438 * 6 4 3 8 8 C 1.52991 * 110.78311 * 61.78394 * 7 6 4 9 9 C 1.55156 * 110.72144 * 185.02579 * 7 6 4 10 10 C 1.55132 * 101.48824 * 82.69337 * 9 7 6 11 11 N 1.47420 * 104.71971 * 37.29633 * 10 9 7 12 12 C 1.36938 * 125.64418 * 155.82047 * 11 10 9 13 13 H 1.08009 * 119.99874 * 179.69511 * 12 11 10 14 14 C 1.38810 * 120.00186 * 359.41122 * 12 11 10 15 15 N 1.31622 * 119.99832 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99967 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47487 * 60.00273 * 16 14 12 18 18 H 1.48502 * 109.47330 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47348 * 300.00104 * 16 14 12 20 20 C 1.47014 * 108.70611 * 335.55292 * 11 10 9 21 21 C 1.50704 * 120.00390 * 179.97438 * 2 1 3 22 22 C 1.53003 * 117.49249 * 1.64630 * 21 2 1 23 23 C 1.52999 * 117.49532 * 293.02754 * 21 2 1 24 24 H 1.08992 * 109.47070 * 90.00199 * 1 2 3 25 25 H 1.08996 * 109.46659 * 210.00248 * 1 2 3 26 26 H 1.09002 * 109.47029 * 330.00080 * 1 2 3 27 27 H 1.08000 * 119.99857 * 352.95323 * 3 2 1 28 28 H 0.97000 * 120.00213 * 0.02562 * 6 4 3 29 29 H 1.09000 * 109.47069 * 298.21724 * 8 7 6 30 30 H 1.09005 * 109.47084 * 58.21279 * 8 7 6 31 31 H 1.08994 * 109.47822 * 178.21645 * 8 7 6 32 32 H 1.08996 * 111.00754 * 200.93858 * 9 7 6 33 33 H 1.09004 * 111.00190 * 324.75007 * 9 7 6 34 34 H 1.09000 * 110.49661 * 278.45808 * 10 9 7 35 35 H 1.08997 * 110.34238 * 156.06636 * 10 9 7 36 36 H 0.97004 * 119.99720 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.88634 * 120.70486 * 20 11 10 38 38 H 1.09001 * 109.88886 * 241.71541 * 20 11 10 39 39 H 1.08994 * 115.54862 * 147.35469 * 21 2 1 40 40 H 1.08991 * 117.50438 * 0.02562 * 22 21 2 41 41 H 1.09000 * 117.49178 * 145.02518 * 22 21 2 42 42 H 1.09000 * 117.49470 * 214.97492 * 23 21 2 43 43 H 1.09000 * 117.50131 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1519 0.0000 4 6 3.6347 1.1567 0.1561 5 8 4.2243 0.1199 0.3935 6 7 4.3213 2.3101 0.0361 7 6 5.7780 2.3150 0.1921 8 6 6.4412 1.4420 -0.8750 9 6 6.3311 3.7637 0.1377 10 6 6.1013 4.2371 1.5970 11 7 6.3828 3.0501 2.4247 12 6 6.7665 3.0665 3.7391 13 1 6.9449 2.1380 4.2612 14 6 6.9318 4.2765 4.3989 15 7 6.7194 5.4082 3.7611 16 14 7.4559 4.2988 6.1917 17 1 8.7754 3.6316 6.3301 18 1 7.5600 5.7044 6.6595 19 1 6.4485 3.5783 7.0109 20 6 6.1772 1.8457 1.6071 21 6 2.2606 -1.3051 0.0006 22 6 1.4389 -2.5952 -0.0378 23 6 2.1541 -2.1817 1.2500 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6380 2.0836 -0.1147 28 1 3.8510 3.1372 -0.1528 29 1 6.1053 0.4113 -0.7614 30 1 6.1666 1.8066 -1.8649 31 1 7.5241 1.4861 -0.7591 32 1 7.3912 3.7679 -0.1156 33 1 5.7615 4.3732 -0.5638 34 1 5.0695 4.5600 1.7355 35 1 6.7892 5.0451 1.8460 36 1 6.8346 6.2538 4.2223 37 1 7.1003 1.2679 1.5593 38 1 5.3812 1.2374 2.0366 39 1 3.2127 -1.2983 -0.5299 40 1 0.3535 -2.5000 -0.0640 41 1 1.8506 -3.4375 -0.5938 42 1 3.0361 -2.7521 1.5412 43 1 1.5393 -1.8143 2.0717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716834346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:34 Heat of formation + Delta-G solvation = 34.568690 kcal Electronic energy + Delta-G solvation = -22382.412899 eV Core-core repulsion = 19236.700752 eV Total energy + Delta-G solvation = -3145.712147 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.94434 -38.20337 -36.81307 -33.89908 -33.36809 -31.76032 -29.99623 -28.63925 -27.86300 -25.61363 -23.92526 -23.20720 -22.29173 -21.05848 -20.29589 -18.91868 -18.45077 -17.04007 -16.61278 -15.81082 -15.25963 -14.70374 -14.61268 -14.23978 -13.76663 -13.57164 -13.34170 -13.01473 -12.84343 -12.67183 -12.30797 -12.17435 -11.97395 -11.67882 -11.52087 -11.49247 -11.26778 -10.91029 -10.82088 -10.72334 -10.39424 -10.29658 -10.21889 -10.06825 -9.80420 -9.58585 -9.02720 -8.82103 -8.59981 -8.42372 -6.75501 -5.60185 -3.00565 1.45199 3.44223 3.47844 3.49530 3.57296 3.66462 4.02071 4.53970 4.56786 4.80376 5.01963 5.07308 5.13680 5.21218 5.40074 5.41766 5.45547 5.53864 5.57162 5.58672 5.63509 5.75198 5.80030 5.92540 6.09205 6.13724 6.21305 6.27997 6.30726 6.38977 6.42187 6.51418 6.59081 6.62115 6.78890 6.92864 7.26538 7.50658 7.68118 7.86556 8.02926 8.40858 8.71500 9.28226 9.89148 10.54492 11.43724 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020218 B = 0.004551 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.561331 B = 6151.692795 C = 6683.634163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.014 4.014 3 C -0.219 4.219 4 C 0.546 3.454 5 O -0.535 6.535 6 N -0.706 5.706 7 C 0.160 3.840 8 C -0.147 4.147 9 C -0.147 4.147 10 C 0.153 3.847 11 N -0.604 5.604 12 C -0.216 4.216 13 H 0.075 0.925 14 C -0.013 4.013 15 N -0.926 5.926 16 Si 0.914 3.086 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.286 1.286 20 C 0.138 3.862 21 C -0.112 4.112 22 C -0.194 4.194 23 C -0.155 4.155 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.124 0.876 28 H 0.396 0.604 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.009 0.991 35 H 0.108 0.892 36 H 0.251 0.749 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.839 -8.711 -11.646 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.016 4.016 3 C -0.240 4.240 4 C 0.335 3.665 5 O -0.414 6.414 6 N -0.356 5.356 7 C 0.074 3.926 8 C -0.206 4.206 9 C -0.186 4.186 10 C 0.028 3.972 11 N -0.330 5.330 12 C -0.345 4.345 13 H 0.093 0.907 14 C -0.208 4.208 15 N -0.575 5.575 16 Si 0.745 3.255 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.213 1.213 20 C 0.011 3.989 21 C -0.130 4.130 22 C -0.231 4.231 23 C -0.192 4.192 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.142 0.858 28 H 0.230 0.770 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.126 0.874 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.152 0.848 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.341 -9.281 -11.290 17.904 hybrid contribution -0.087 0.617 0.914 1.106 sum -10.429 -8.664 -10.377 17.073 Atomic orbital electron populations 1.20983 0.91450 1.03172 1.02682 1.21733 0.94954 0.93428 0.91473 1.22448 0.94018 0.98430 1.09057 1.18397 0.87414 0.83691 0.76991 1.90702 1.70787 1.31541 1.48410 1.45901 1.07650 1.09894 1.72138 1.21291 0.78770 0.96765 0.95768 1.22016 1.00281 1.01086 0.97200 1.23387 1.00552 0.93454 1.01195 1.21988 0.99348 0.92050 0.83858 1.44502 1.79831 1.00177 1.08520 1.19058 1.37358 0.92817 0.85245 0.90666 1.24746 1.02364 0.95222 0.98471 1.69761 1.56232 0.96579 1.34928 0.86154 0.78472 0.76475 0.84436 1.21187 1.21603 1.21327 1.21592 0.97827 0.90563 0.88912 1.21436 1.00377 0.87651 1.03525 1.23124 0.98879 0.98827 1.02223 1.22779 1.02553 1.02550 0.91275 0.90580 0.90962 0.91056 0.85799 0.77022 0.91123 0.93292 0.91939 0.90654 0.92035 0.97261 0.87400 0.93819 0.95458 0.94685 0.84844 0.88889 0.88885 0.88540 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.49 36.01 0.34 -0.75 16 2 C -0.01 -0.17 5.80 -101.16 -0.59 -0.76 16 3 C -0.22 -2.90 9.62 -37.80 -0.36 -3.26 16 4 C 0.55 9.06 6.90 -12.67 -0.09 8.97 16 5 O -0.53 -10.11 10.27 5.26 0.05 -10.05 16 6 N -0.71 -11.58 5.14 -47.08 -0.24 -11.82 16 7 C 0.16 2.94 0.80 -129.99 -0.10 2.84 16 8 C -0.15 -2.38 8.41 37.15 0.31 -2.07 16 9 C -0.15 -2.74 6.10 -24.46 -0.15 -2.89 16 10 C 0.15 3.69 5.90 -2.41 -0.01 3.68 16 11 N -0.60 -16.05 3.39 -169.93 -0.58 -16.62 16 12 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 13 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 14 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 15 N -0.93 -27.20 10.08 55.49 0.56 -26.64 16 16 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 C 0.14 3.17 6.13 -3.07 -0.02 3.15 16 21 C -0.11 -1.44 4.35 -91.77 -0.40 -1.84 16 22 C -0.19 -1.96 9.79 -26.73 -0.26 -2.23 16 23 C -0.15 -1.90 10.23 -26.73 -0.27 -2.17 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.57 6.37 -51.93 -0.33 0.24 16 26 H 0.07 0.57 8.07 -51.93 -0.42 0.16 16 27 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.40 5.63 8.45 -40.82 -0.35 5.29 16 29 H 0.07 1.22 6.45 -51.93 -0.34 0.88 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.98 8.13 -51.93 -0.42 0.55 16 32 H 0.07 1.38 8.04 -51.93 -0.42 0.97 16 33 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.11 2.94 5.84 -51.93 -0.30 2.64 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.03 0.64 7.82 -51.93 -0.41 0.24 16 38 H 0.04 0.88 6.48 -51.93 -0.34 0.54 16 39 H 0.13 2.01 6.23 -51.93 -0.32 1.69 16 40 H 0.09 0.80 6.31 -51.93 -0.33 0.47 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -31.95 338.32 -8.88 -40.83 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.89 Total: 5.84 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.86 Total: -4.22 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.26 Total: -55.09 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.05 Total: -10.05 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.95 -8.88 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716834346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.399 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds