Wall clock time and date at job start Tue Mar 31 2020 00:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33001 * 119.99706 * 2 1 4 4 C 1.47103 * 119.99860 * 172.96203 * 3 2 1 5 5 O 1.21617 * 119.99992 * 354.03095 * 4 3 2 6 6 N 1.34773 * 119.99936 * 174.03414 * 4 3 2 7 7 C 1.46501 * 119.99895 * 179.97438 * 6 4 3 8 8 C 1.52991 * 110.78311 * 61.78394 * 7 6 4 9 9 C 1.55156 * 110.72144 * 185.02579 * 7 6 4 10 10 C 1.55132 * 101.48824 * 82.69337 * 9 7 6 11 11 N 1.47420 * 104.71971 * 37.29633 * 10 9 7 12 12 C 1.36938 * 125.64418 * 155.82047 * 11 10 9 13 13 H 1.08009 * 119.99874 * 179.69511 * 12 11 10 14 14 C 1.38810 * 120.00186 * 359.41122 * 12 11 10 15 15 N 1.31622 * 119.99832 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99967 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47487 * 60.00273 * 16 14 12 18 18 H 1.48502 * 109.47330 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47348 * 300.00104 * 16 14 12 20 20 C 1.47014 * 108.70611 * 335.55292 * 11 10 9 21 21 C 1.50704 * 120.00390 * 179.97438 * 2 1 3 22 22 C 1.53003 * 117.49249 * 1.64630 * 21 2 1 23 23 C 1.52999 * 117.49532 * 293.02754 * 21 2 1 24 24 H 1.08992 * 109.47070 * 90.00199 * 1 2 3 25 25 H 1.08996 * 109.46659 * 210.00248 * 1 2 3 26 26 H 1.09002 * 109.47029 * 330.00080 * 1 2 3 27 27 H 1.08000 * 119.99857 * 352.95323 * 3 2 1 28 28 H 0.97000 * 120.00213 * 0.02562 * 6 4 3 29 29 H 1.09000 * 109.47069 * 298.21724 * 8 7 6 30 30 H 1.09005 * 109.47084 * 58.21279 * 8 7 6 31 31 H 1.08994 * 109.47822 * 178.21645 * 8 7 6 32 32 H 1.08996 * 111.00754 * 200.93858 * 9 7 6 33 33 H 1.09004 * 111.00190 * 324.75007 * 9 7 6 34 34 H 1.09000 * 110.49661 * 278.45808 * 10 9 7 35 35 H 1.08997 * 110.34238 * 156.06636 * 10 9 7 36 36 H 0.97004 * 119.99720 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.88634 * 120.70486 * 20 11 10 38 38 H 1.09001 * 109.88886 * 241.71541 * 20 11 10 39 39 H 1.08994 * 115.54862 * 147.35469 * 21 2 1 40 40 H 1.08991 * 117.50438 * 0.02562 * 22 21 2 41 41 H 1.09000 * 117.49178 * 145.02518 * 22 21 2 42 42 H 1.09000 * 117.49470 * 214.97492 * 23 21 2 43 43 H 1.09000 * 117.50131 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1519 0.0000 4 6 3.6347 1.1567 0.1561 5 8 4.2243 0.1199 0.3935 6 7 4.3213 2.3101 0.0361 7 6 5.7780 2.3150 0.1921 8 6 6.4412 1.4420 -0.8750 9 6 6.3311 3.7637 0.1377 10 6 6.1013 4.2371 1.5970 11 7 6.3828 3.0501 2.4247 12 6 6.7665 3.0665 3.7391 13 1 6.9449 2.1380 4.2612 14 6 6.9318 4.2765 4.3989 15 7 6.7194 5.4082 3.7611 16 14 7.4559 4.2988 6.1917 17 1 8.7754 3.6316 6.3301 18 1 7.5600 5.7044 6.6595 19 1 6.4485 3.5783 7.0109 20 6 6.1772 1.8457 1.6071 21 6 2.2606 -1.3051 0.0006 22 6 1.4389 -2.5952 -0.0378 23 6 2.1541 -2.1817 1.2500 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6380 2.0836 -0.1147 28 1 3.8510 3.1372 -0.1528 29 1 6.1053 0.4113 -0.7614 30 1 6.1666 1.8066 -1.8649 31 1 7.5241 1.4861 -0.7591 32 1 7.3912 3.7679 -0.1156 33 1 5.7615 4.3732 -0.5638 34 1 5.0695 4.5600 1.7355 35 1 6.7892 5.0451 1.8460 36 1 6.8346 6.2538 4.2223 37 1 7.1003 1.2679 1.5593 38 1 5.3812 1.2374 2.0366 39 1 3.2127 -1.2983 -0.5299 40 1 0.3535 -2.5000 -0.0640 41 1 1.8506 -3.4375 -0.5938 42 1 3.0361 -2.7521 1.5412 43 1 1.5393 -1.8143 2.0717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716834346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:33 Heat of formation + Delta-G solvation = 14.862319 kcal Electronic energy + Delta-G solvation = -22383.267432 eV Core-core repulsion = 19236.700752 eV Total energy + Delta-G solvation = -3146.566680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28608 -39.46629 -38.16424 -35.66934 -34.34550 -33.51085 -31.68514 -30.37397 -28.75107 -27.54342 -25.51554 -24.45312 -23.20618 -22.38724 -22.08459 -20.41078 -19.60809 -18.82586 -17.94731 -17.18154 -16.73868 -16.45514 -15.92687 -15.59487 -15.46086 -14.99315 -14.33427 -14.22372 -14.05194 -13.96252 -13.88636 -13.57967 -13.30628 -13.13022 -13.08370 -12.82900 -12.76721 -12.43480 -12.19568 -12.09397 -12.04673 -11.93220 -11.69434 -11.64446 -11.46032 -11.23496 -10.75872 -10.30384 -9.97030 -9.66945 -8.89009 -7.79098 -5.23213 0.43658 1.43746 1.46971 1.53613 2.32897 2.44306 2.48096 3.08462 3.29524 3.60897 3.67442 3.71737 3.92054 4.03798 4.07940 4.19225 4.19317 4.28582 4.46788 4.63363 4.66022 4.68414 4.75289 4.82753 4.83003 4.87142 4.93687 4.97545 5.01828 5.08717 5.11762 5.25135 5.29495 5.35548 5.41043 5.47658 5.61226 5.69178 5.76626 5.82194 6.30434 6.77928 7.10362 7.46221 7.76572 8.40503 9.21698 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020218 B = 0.004551 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.561331 B = 6151.692795 C = 6683.634163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.000 4.000 3 C -0.242 4.242 4 C 0.537 3.463 5 O -0.566 6.566 6 N -0.705 5.705 7 C 0.171 3.829 8 C -0.137 4.137 9 C -0.128 4.128 10 C 0.155 3.845 11 N -0.623 5.623 12 C -0.245 4.245 13 H 0.068 0.932 14 C -0.060 4.060 15 N -0.944 5.944 16 Si 0.979 3.021 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.283 1.283 20 C 0.138 3.862 21 C -0.136 4.136 22 C -0.161 4.161 23 C -0.171 4.171 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.408 0.592 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.100 0.900 34 H -0.009 1.009 35 H 0.077 0.923 36 H 0.249 0.751 37 H 0.017 0.983 38 H 0.008 0.992 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.513 -8.925 -12.869 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.002 4.002 3 C -0.263 4.263 4 C 0.328 3.672 5 O -0.448 6.448 6 N -0.356 5.356 7 C 0.084 3.916 8 C -0.196 4.196 9 C -0.167 4.167 10 C 0.030 3.970 11 N -0.350 5.350 12 C -0.374 4.374 13 H 0.086 0.914 14 C -0.252 4.252 15 N -0.593 5.593 16 Si 0.807 3.193 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.209 1.209 20 C 0.012 3.988 21 C -0.154 4.154 22 C -0.197 4.197 23 C -0.208 4.208 24 H 0.117 0.883 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.167 0.833 28 H 0.243 0.757 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.009 0.991 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.026 0.974 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.032 -9.493 -12.539 19.802 hybrid contribution 0.421 0.601 1.328 1.517 sum -11.611 -8.892 -11.212 18.428 Atomic orbital electron populations 1.21073 0.88419 1.04197 1.04340 1.22123 0.96926 0.92438 0.88715 1.22486 0.91963 1.00181 1.11625 1.19036 0.88924 0.83096 0.76158 1.90696 1.71758 1.32565 1.49753 1.45846 1.06813 1.10664 1.72241 1.21088 0.80367 0.96684 0.93414 1.21921 1.00248 0.99775 0.97613 1.23234 1.01748 0.93687 0.97985 1.21810 0.97275 0.90780 0.87099 1.44788 1.79690 1.02023 1.08451 1.19343 1.38273 0.92929 0.86901 0.91420 1.25550 1.02364 0.94800 1.02527 1.70002 1.56416 0.96760 1.36156 0.85154 0.78214 0.76509 0.79444 1.20352 1.21182 1.20923 1.21651 0.96430 0.89283 0.91432 1.21383 1.00490 0.89573 1.03957 1.23219 0.99885 0.97101 0.99515 1.22792 1.02883 1.03077 0.92036 0.88345 0.89867 0.90121 0.83287 0.75655 0.92524 0.90521 0.91499 0.89985 0.88205 0.99073 0.90484 0.94129 0.96501 0.97374 0.87625 0.86366 0.87924 0.89887 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.49 71.24 0.68 -1.05 16 2 C 0.00 0.00 5.80 -17.61 -0.10 -0.10 16 3 C -0.24 -6.14 9.62 23.43 0.23 -5.91 16 4 C 0.54 17.87 6.90 86.57 0.60 18.47 16 5 O -0.57 -22.13 10.27 -4.08 -0.04 -22.18 16 6 N -0.70 -22.71 5.14 -421.11 -2.16 -24.87 16 7 C 0.17 6.23 0.80 4.79 0.00 6.24 16 8 C -0.14 -4.28 8.41 71.98 0.61 -3.67 16 9 C -0.13 -4.61 6.10 32.06 0.20 -4.41 16 10 C 0.16 7.64 5.90 86.93 0.51 8.15 16 11 N -0.62 -34.16 3.39 -691.55 -2.35 -36.51 16 12 C -0.25 -14.66 10.27 84.03 0.86 -13.80 16 13 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 14 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 15 N -0.94 -56.52 10.08 21.65 0.22 -56.30 16 16 Si 0.98 47.05 29.55 68.60 2.03 49.07 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 19 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 20 C 0.14 6.58 6.13 86.73 0.53 7.11 16 21 C -0.14 -3.43 4.35 -11.54 -0.05 -3.48 16 22 C -0.16 -2.91 9.79 30.60 0.30 -2.61 16 23 C -0.17 -4.15 10.23 30.59 0.31 -3.84 16 24 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 1.00 6.37 -2.39 -0.02 0.98 16 26 H 0.08 1.02 8.07 -2.39 -0.02 1.00 16 27 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 28 H 0.41 11.04 8.45 -92.71 -0.78 10.25 16 29 H 0.06 1.95 6.45 -2.39 -0.02 1.93 16 30 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 32 H 0.08 2.88 8.04 -2.39 -0.02 2.86 16 33 H 0.10 2.86 8.04 -2.38 -0.02 2.84 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.08 4.30 5.84 -2.39 -0.01 4.29 16 36 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.02 0.83 7.82 -2.39 -0.02 0.81 16 38 H 0.01 0.43 6.48 -2.39 -0.02 0.42 16 39 H 0.11 3.29 6.23 -2.39 -0.01 3.27 16 40 H 0.12 1.57 6.31 -2.39 -0.02 1.55 16 41 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -72.24 338.32 3.05 -69.19 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.22 Total: 23.51 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 5.14 Total: -1.91 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -4.29 Total: -117.68 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.04 Total: -22.18 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -72.24 3.05 -69.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716834346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.052 kcal (2) G-P(sol) polarization free energy of solvation -72.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds