Wall clock time and date at job start Tue Mar 31 2020 00:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32995 * 119.99886 * 2 1 4 4 C 1.47100 * 120.00411 * 353.10084 * 3 2 1 5 5 O 1.21616 * 119.99713 * 353.77415 * 4 3 2 6 6 N 1.34772 * 120.00612 * 173.77417 * 4 3 2 7 7 C 1.46494 * 120.00182 * 179.72661 * 6 4 3 8 8 C 1.53002 * 110.88839 * 62.69895 * 7 6 4 9 9 C 1.55160 * 111.00600 * 186.62091 * 7 6 4 10 10 C 1.54322 * 102.94190 * 82.56994 * 9 7 6 11 11 N 1.47030 * 107.27096 * 22.19485 * 10 9 7 12 12 C 1.36937 * 125.65332 * 181.01981 * 11 10 9 13 13 H 1.07995 * 120.00245 * 180.02562 * 12 11 10 14 14 C 1.38816 * 119.99534 * 0.04259 * 12 11 10 15 15 N 1.31617 * 120.00156 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99848 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46878 * 90.00246 * 16 14 12 18 18 H 1.48498 * 109.47252 * 210.00454 * 16 14 12 19 19 H 1.48500 * 109.47216 * 330.00230 * 16 14 12 20 20 C 1.47428 * 108.70013 * 1.05999 * 11 10 9 21 21 C 1.50700 * 120.00215 * 179.97438 * 2 1 3 22 22 C 1.52996 * 117.49596 * 8.74794 * 21 2 1 23 23 C 1.52993 * 117.49933 * 300.08828 * 21 2 1 24 24 H 1.08994 * 109.47273 * 84.53379 * 1 2 3 25 25 H 1.08996 * 109.47132 * 204.53915 * 1 2 3 26 26 H 1.09003 * 109.46935 * 324.53829 * 1 2 3 27 27 H 1.08009 * 119.99902 * 173.10586 * 3 2 1 28 28 H 0.97003 * 119.99419 * 359.97438 * 6 4 3 29 29 H 1.09004 * 109.46702 * 60.70165 * 8 7 6 30 30 H 1.08996 * 109.47196 * 180.69547 * 8 7 6 31 31 H 1.08997 * 109.47298 * 300.70573 * 8 7 6 32 32 H 1.08998 * 110.72472 * 200.93519 * 9 7 6 33 33 H 1.09001 * 110.71689 * 324.21495 * 9 7 6 34 34 H 1.09003 * 109.89048 * 262.78169 * 10 9 7 35 35 H 1.09004 * 109.88441 * 141.60891 * 10 9 7 36 36 H 0.96999 * 119.99876 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.36614 * 217.03329 * 20 11 10 38 38 H 1.09003 * 110.46200 * 94.75477 * 20 11 10 39 39 H 1.08997 * 115.54975 * 154.41442 * 21 2 1 40 40 H 1.09002 * 117.49978 * 359.97438 * 22 21 2 41 41 H 1.09005 * 117.49969 * 145.02147 * 22 21 2 42 42 H 1.08998 * 117.49960 * 214.97590 * 23 21 2 43 43 H 1.09005 * 117.50092 * 359.97108 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4444 2.4211 -0.1530 5 8 0.2521 2.4136 -0.3926 6 7 2.0991 3.5925 -0.0278 7 6 1.3758 4.8565 -0.1861 8 6 0.2963 5.0056 0.8879 9 6 2.3520 6.0623 -0.1657 10 6 2.8717 6.1110 -1.6179 11 7 1.8819 5.4222 -2.4591 12 6 1.9792 5.2299 -3.8114 13 1 1.1949 4.7094 -4.3407 14 6 3.0864 5.7037 -4.5018 15 7 4.0428 6.3372 -3.8566 16 14 3.2197 5.4408 -6.3464 17 1 2.5970 6.5870 -7.0559 18 1 4.6507 5.3394 -6.7299 19 1 2.5172 4.1868 -6.7197 20 6 0.7666 4.9737 -1.6056 21 6 2.2605 -1.3051 0.0006 22 6 1.4521 -2.5876 -0.2052 23 6 2.0245 -2.2565 1.1752 24 1 -0.3633 0.0979 -1.0229 25 1 -0.3633 -0.9348 0.4268 26 1 -0.3633 0.8371 0.5962 27 1 3.2461 1.1552 0.1123 28 1 3.0501 3.5985 0.1636 29 1 0.7616 5.0008 1.8736 30 1 -0.2346 5.9461 0.7413 31 1 -0.4067 4.1760 0.8140 32 1 1.8239 6.9820 0.0859 33 1 3.1710 5.8836 0.5311 34 1 3.8333 5.6020 -1.6849 35 1 2.9751 7.1471 -1.9402 36 1 4.8162 6.6686 -4.3391 37 1 0.3980 4.0043 -1.9413 38 1 -0.0386 5.7084 -1.6134 39 1 3.2637 -1.2689 -0.4241 40 1 0.3751 -2.4875 -0.3407 41 1 1.9236 -3.3954 -0.7650 42 1 2.8724 -2.8466 1.5231 43 1 1.3246 -1.9383 1.9479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716834347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:37 Heat of formation + Delta-G solvation = 11.845357 kcal Electronic energy + Delta-G solvation = -22315.625274 eV Core-core repulsion = 19168.927770 eV Total energy + Delta-G solvation = -3146.697505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.26087 -39.42480 -38.40691 -35.68587 -34.05389 -33.59796 -31.71800 -30.35141 -28.58279 -27.51549 -25.62500 -24.91806 -23.20608 -22.38182 -21.76338 -20.40436 -19.51927 -18.79560 -17.75756 -17.22577 -16.81203 -16.50053 -16.05531 -15.59834 -15.57246 -15.09490 -14.62009 -14.25324 -13.95430 -13.87066 -13.83053 -13.52911 -13.35025 -13.04059 -12.82803 -12.79660 -12.75239 -12.42711 -12.20641 -12.08962 -12.04976 -11.94301 -11.80609 -11.69424 -11.50070 -11.31096 -10.71906 -10.33177 -10.00078 -9.66171 -8.86654 -7.86694 -5.20350 0.42031 1.42201 1.43938 1.52740 2.30137 2.46455 2.47539 3.02925 3.31347 3.55264 3.64824 3.74233 3.90308 3.97151 4.07238 4.15550 4.20787 4.22702 4.35907 4.63982 4.68564 4.71205 4.78443 4.83303 4.86769 4.88881 4.94210 5.00536 5.04141 5.07643 5.16066 5.16878 5.26918 5.37087 5.41361 5.57988 5.60024 5.65467 5.73329 5.82720 6.19270 6.77169 7.10896 7.44547 7.76933 8.41527 9.23260 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016458 B = 0.004953 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.899181 B = 5651.893302 C = 6700.775859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.002 3.998 3 C -0.241 4.241 4 C 0.541 3.459 5 O -0.570 6.570 6 N -0.699 5.699 7 C 0.167 3.833 8 C -0.137 4.137 9 C -0.129 4.129 10 C 0.186 3.814 11 N -0.621 5.621 12 C -0.243 4.243 13 H 0.067 0.933 14 C -0.059 4.059 15 N -0.946 5.946 16 Si 0.974 3.026 17 H -0.285 1.285 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.129 3.871 21 C -0.151 4.151 22 C -0.169 4.169 23 C -0.152 4.152 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.140 0.860 28 H 0.406 0.594 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.016 0.984 35 H 0.007 0.993 36 H 0.248 0.752 37 H 0.032 0.968 38 H 0.022 0.978 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 -13.671 14.055 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.000 4.000 3 C -0.261 4.261 4 C 0.332 3.668 5 O -0.452 6.452 6 N -0.349 5.349 7 C 0.080 3.920 8 C -0.196 4.196 9 C -0.167 4.167 10 C 0.061 3.939 11 N -0.348 5.348 12 C -0.372 4.372 13 H 0.085 0.915 14 C -0.252 4.252 15 N -0.595 5.595 16 Si 0.803 3.197 17 H -0.211 1.211 18 H -0.214 1.214 19 H -0.202 1.202 20 C 0.002 3.998 21 C -0.169 4.169 22 C -0.206 4.206 23 C -0.189 4.189 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.158 0.842 28 H 0.241 0.759 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.035 0.965 35 H 0.026 0.974 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.039 0.961 39 H 0.138 0.862 40 H 0.119 0.881 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.203 -13.600 13.727 19.587 hybrid contribution 0.775 0.393 -1.466 1.704 sum -2.428 -13.207 12.261 18.184 Atomic orbital electron populations 1.21053 0.91297 1.02580 1.02487 1.21963 0.96014 0.93148 0.88874 1.22369 1.01008 0.91235 1.11515 1.18847 0.86885 0.84883 0.76174 1.90679 1.16396 1.88029 1.50122 1.45707 1.12781 1.04768 1.71658 1.21319 0.92985 0.83571 0.94143 1.21892 0.97702 1.02567 0.97411 1.23097 0.99128 0.97241 0.97248 1.20930 0.91154 0.94591 0.87197 1.44700 1.20480 1.66050 1.03525 1.19325 1.03765 1.30673 0.83443 0.91502 1.25527 0.96641 1.00800 1.02247 1.70151 1.10407 1.43819 1.35113 0.85145 0.76672 0.77809 0.80108 1.21146 1.21449 1.20151 1.21987 0.90367 0.96595 0.90807 1.21308 1.00509 0.88130 1.06935 1.23177 1.00410 0.96936 1.00090 1.23078 1.04005 1.00592 0.91192 0.92034 0.90493 0.90838 0.84215 0.75902 0.90593 0.90903 0.92447 0.89132 0.88556 0.96539 0.97429 0.94307 0.94997 0.96074 0.86216 0.88131 0.86953 0.86533 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 7.91 71.23 0.56 -2.46 16 2 C 0.00 0.05 5.81 -17.62 -0.10 -0.05 16 3 C -0.24 -6.73 9.67 23.43 0.23 -6.50 16 4 C 0.54 18.73 7.00 86.57 0.61 19.34 16 5 O -0.57 -22.49 10.05 -4.08 -0.04 -22.53 16 6 N -0.70 -23.40 5.17 -420.20 -2.17 -25.57 16 7 C 0.17 5.95 0.82 5.00 0.00 5.95 16 8 C -0.14 -4.03 8.62 71.98 0.62 -3.41 16 9 C -0.13 -4.50 5.99 31.78 0.19 -4.31 16 10 C 0.19 9.16 5.36 86.73 0.47 9.62 16 11 N -0.62 -33.60 3.40 -691.95 -2.35 -35.95 16 12 C -0.24 -14.48 10.28 84.03 0.86 -13.62 16 13 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 14 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 15 N -0.95 -57.33 10.31 21.65 0.22 -57.11 16 16 Si 0.97 47.43 29.55 68.60 2.03 49.45 16 17 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 18 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 C 0.13 5.93 6.10 86.85 0.53 6.46 16 21 C -0.15 -2.79 6.00 -11.54 -0.07 -2.86 16 22 C -0.17 -2.50 9.77 30.62 0.30 -2.20 16 23 C -0.15 -2.06 10.10 30.62 0.31 -1.75 16 24 H 0.06 1.81 8.05 -2.39 -0.02 1.79 16 25 H 0.08 1.50 6.31 -2.39 -0.02 1.49 16 26 H 0.07 2.18 6.12 -2.39 -0.01 2.16 16 27 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.41 11.94 8.47 -92.71 -0.79 11.16 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 31 H 0.06 1.87 6.46 -2.39 -0.02 1.86 16 32 H 0.09 2.87 8.04 -2.39 -0.02 2.85 16 33 H 0.10 2.77 8.05 -2.39 -0.02 2.75 16 34 H 0.02 0.89 7.38 -2.39 -0.02 0.87 16 35 H 0.01 0.42 7.51 -2.39 -0.02 0.40 16 36 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.03 1.62 6.30 -2.39 -0.02 1.60 16 38 H 0.02 0.98 8.03 -2.39 -0.02 0.96 16 39 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.10 1.51 6.42 -2.39 -0.02 1.49 16 41 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -71.65 338.89 2.88 -68.78 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.21 Total: 21.71 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 4.97 Total: 1.21 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -4.30 Total: -118.62 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.04 Total: -22.53 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal Total: -71.65 2.88 -68.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716834347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.624 kcal (2) G-P(sol) polarization free energy of solvation -71.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds