Wall clock time and date at job start Tue Mar 31 2020 00:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32995 * 120.00225 * 2 1 4 4 C 1.47105 * 120.00066 * 172.34594 * 3 2 1 5 5 O 1.21608 * 119.99862 * 354.00552 * 4 3 2 6 6 N 1.34779 * 119.99771 * 174.00435 * 4 3 2 7 7 C 1.46502 * 119.99817 * 180.02562 * 6 4 3 8 8 C 1.53000 * 110.63826 * 300.69857 * 7 6 4 9 9 C 1.55163 * 110.71805 * 177.56048 * 7 6 4 10 10 C 1.55393 * 101.36194 * 277.03907 * 9 7 6 11 11 N 1.47420 * 104.87626 * 323.02280 * 10 9 7 12 12 C 1.36943 * 125.64538 * 204.09855 * 11 10 9 13 13 H 1.08003 * 119.99673 * 180.02562 * 12 11 10 14 14 C 1.38806 * 119.99956 * 0.03735 * 12 11 10 15 15 N 1.31626 * 120.00298 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00011 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47069 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47052 * 120.00014 * 16 14 12 19 19 H 1.48500 * 109.47145 * 239.99945 * 16 14 12 20 20 C 1.47019 * 108.70410 * 24.12692 * 11 10 9 21 21 C 1.50698 * 120.00028 * 180.02562 * 2 1 3 22 22 C 1.52999 * 117.50134 * 287.99260 * 21 2 1 23 23 C 1.52994 * 60.03289 * 107.47735 * 22 21 2 24 24 H 1.08993 * 109.47029 * 270.00074 * 1 2 3 25 25 H 1.09003 * 109.47222 * 29.99900 * 1 2 3 26 26 H 1.08997 * 109.47134 * 149.99212 * 1 2 3 27 27 H 1.08001 * 120.00157 * 352.35119 * 3 2 1 28 28 H 0.97001 * 120.00029 * 0.02562 * 6 4 3 29 29 H 1.09001 * 109.47308 * 59.30307 * 8 7 6 30 30 H 1.09004 * 109.46958 * 179.30041 * 8 7 6 31 31 H 1.08996 * 109.47430 * 299.29817 * 8 7 6 32 32 H 1.08996 * 111.00685 * 35.21065 * 9 7 6 33 33 H 1.08997 * 111.00159 * 159.06377 * 9 7 6 34 34 H 1.09000 * 110.34197 * 204.16224 * 10 9 7 35 35 H 1.09003 * 110.43612 * 81.91998 * 10 9 7 36 36 H 0.97000 * 120.00007 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.88615 * 239.52357 * 20 11 10 38 38 H 1.09004 * 110.00768 * 118.43522 * 20 11 10 39 39 H 1.09005 * 115.55278 * 142.32341 * 21 2 1 40 40 H 1.08993 * 117.50234 * 214.98585 * 22 21 2 41 41 H 1.09006 * 117.49524 * 359.97438 * 22 21 2 42 42 H 1.09000 * 117.49971 * 107.50418 * 23 22 21 43 43 H 1.08999 * 117.50213 * 252.52301 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6332 1.1574 0.1697 5 8 4.2204 0.1220 0.4186 6 7 4.3211 2.3101 0.0493 7 6 5.7764 2.3156 0.2177 8 6 6.1602 1.8070 1.6087 9 6 6.3518 3.7360 -0.0255 10 6 6.4642 3.7595 -1.5752 11 7 6.8736 2.3927 -1.9457 12 6 7.5329 2.0405 -3.0932 13 1 7.7892 1.0068 -3.2731 14 6 7.8720 3.0119 -4.0248 15 7 7.5603 4.2718 -3.8052 16 14 8.7707 2.5315 -5.5904 17 1 9.0022 1.0646 -5.5979 18 1 7.9489 2.9083 -6.7684 19 1 10.0748 3.2393 -5.6497 20 6 6.4563 1.4702 -0.8797 21 6 2.2605 -1.3051 -0.0006 22 6 2.2507 -2.1271 1.2898 23 6 1.4400 -2.5948 0.0795 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6392 2.0829 -0.1245 28 1 3.8526 3.1361 -0.1489 29 1 5.7834 0.7928 1.7415 30 1 7.2457 1.8073 1.7089 31 1 5.7252 2.4584 2.3666 32 1 5.6639 4.5025 0.3313 33 1 7.3315 3.8455 0.4394 34 1 7.2193 4.4801 -1.8894 35 1 5.5004 4.0014 -2.0231 36 1 7.7976 4.9507 -4.4561 37 1 7.3275 0.9603 -0.4685 38 1 5.7510 0.7388 -1.2744 39 1 3.1696 -1.3228 -0.6017 40 1 3.1531 -2.6858 1.5375 41 1 1.6995 -1.7237 2.1393 42 1 1.8091 -3.4614 -0.4691 43 1 0.3555 -2.4989 0.1326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716834348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:41 Heat of formation + Delta-G solvation = 33.585737 kcal Electronic energy + Delta-G solvation = -22386.472923 eV Core-core repulsion = 19240.718152 eV Total energy + Delta-G solvation = -3145.754771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93324 -38.18139 -36.80226 -33.89387 -33.37802 -31.76033 -29.99855 -28.63484 -27.85232 -25.62738 -23.93225 -23.18825 -22.30833 -21.07389 -20.29771 -18.92000 -18.42586 -17.04192 -16.61267 -15.77872 -15.23490 -14.66649 -14.62394 -14.31212 -13.67792 -13.64753 -13.43010 -12.98066 -12.84307 -12.67141 -12.31687 -12.19199 -11.94225 -11.68812 -11.51171 -11.48429 -11.21828 -10.90320 -10.84713 -10.74415 -10.33702 -10.30748 -10.27386 -10.02649 -9.79518 -9.59120 -9.06785 -8.80842 -8.61787 -8.42357 -6.76751 -5.61836 -3.01908 1.45780 3.42136 3.47934 3.50527 3.56448 3.68199 4.02288 4.52876 4.56363 4.81078 5.02008 5.09222 5.11720 5.22115 5.39484 5.40985 5.45113 5.53715 5.58610 5.60291 5.63877 5.75587 5.79885 5.89148 6.10489 6.13819 6.22819 6.28535 6.31699 6.38550 6.42491 6.51137 6.59655 6.61817 6.78717 6.90479 7.25322 7.50000 7.67659 7.85709 8.03452 8.39213 8.71565 9.26957 9.87808 10.53063 11.42532 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020221 B = 0.004546 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.383384 B = 6158.058147 C = 6675.259666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.014 4.014 3 C -0.218 4.218 4 C 0.545 3.455 5 O -0.534 6.534 6 N -0.706 5.706 7 C 0.161 3.839 8 C -0.149 4.149 9 C -0.148 4.148 10 C 0.153 3.847 11 N -0.604 5.604 12 C -0.216 4.216 13 H 0.077 0.923 14 C -0.013 4.013 15 N -0.925 5.925 16 Si 0.913 3.087 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.138 3.862 21 C -0.107 4.107 22 C -0.152 4.152 23 C -0.194 4.194 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.124 0.876 28 H 0.396 0.604 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.010 0.990 36 H 0.250 0.750 37 H 0.028 0.972 38 H 0.032 0.968 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.360 -5.397 10.972 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.016 4.016 3 C -0.239 4.239 4 C 0.334 3.666 5 O -0.414 6.414 6 N -0.356 5.356 7 C 0.075 3.925 8 C -0.208 4.208 9 C -0.187 4.187 10 C 0.029 3.971 11 N -0.330 5.330 12 C -0.344 4.344 13 H 0.095 0.905 14 C -0.208 4.208 15 N -0.574 5.574 16 Si 0.744 3.256 17 H -0.206 1.206 18 H -0.218 1.218 19 H -0.218 1.218 20 C 0.012 3.988 21 C -0.124 4.124 22 C -0.189 4.189 23 C -0.231 4.231 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.142 0.858 28 H 0.230 0.770 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.028 0.972 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.148 0.852 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.824 -6.043 10.953 17.915 hybrid contribution 0.144 0.367 -1.017 1.091 sum -12.681 -5.676 9.936 17.080 Atomic orbital electron populations 1.20992 0.91410 1.03289 1.02556 1.21722 0.94957 0.93435 0.91485 1.22461 0.94008 0.98423 1.09028 1.18404 0.87404 0.83624 0.77172 1.90711 1.70817 1.31400 1.48426 1.45906 1.07690 1.10159 1.71871 1.21295 0.78893 0.97416 0.94927 1.22040 1.01238 1.02491 0.95008 1.23429 1.00113 0.93423 1.01692 1.22005 0.99521 0.89180 0.86443 1.44506 1.66743 1.02581 1.19189 1.19149 1.27703 0.93441 0.94108 0.90540 1.24753 1.01677 0.95480 0.98926 1.69793 1.52463 0.99640 1.35532 0.86005 0.79053 0.77515 0.83028 1.20561 1.21843 1.21770 1.21583 0.95873 0.92668 0.88684 1.21313 1.00410 0.88003 1.02711 1.22742 1.01920 1.02778 0.91480 1.23160 0.98304 0.98544 1.03085 0.90620 0.91087 0.90898 0.85808 0.77016 0.90739 0.92023 0.93361 0.91963 0.90671 0.87540 0.97192 0.93907 0.95423 0.94990 0.85237 0.88680 0.89409 0.88844 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 9.45 36.00 0.34 -0.73 16 2 C -0.01 -0.17 5.80 -101.17 -0.59 -0.76 16 3 C -0.22 -2.88 9.63 -37.80 -0.36 -3.24 16 4 C 0.54 8.99 6.89 -12.66 -0.09 8.90 16 5 O -0.53 -9.99 10.39 5.27 0.05 -9.94 16 6 N -0.71 -11.58 5.14 -47.08 -0.24 -11.83 16 7 C 0.16 2.95 0.80 -129.98 -0.10 2.85 16 8 C -0.15 -2.44 8.41 37.16 0.31 -2.13 16 9 C -0.15 -2.75 6.11 -24.32 -0.15 -2.90 16 10 C 0.15 3.71 5.88 -2.27 -0.01 3.69 16 11 N -0.60 -15.96 3.40 -169.77 -0.58 -16.54 16 12 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 13 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 14 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 15 N -0.92 -27.13 10.09 55.49 0.56 -26.57 16 16 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 C 0.14 3.17 6.16 -3.07 -0.02 3.15 16 21 C -0.11 -1.41 4.12 -91.74 -0.38 -1.79 16 22 C -0.15 -1.78 10.22 -26.74 -0.27 -2.05 16 23 C -0.19 -2.02 9.78 -26.70 -0.26 -2.28 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 26 H 0.07 0.57 6.45 -51.93 -0.34 0.23 16 27 H 0.12 1.31 8.04 -52.49 -0.42 0.89 16 28 H 0.40 5.67 8.46 -40.82 -0.35 5.32 16 29 H 0.07 1.30 6.20 -51.93 -0.32 0.98 16 30 H 0.06 0.98 8.12 -51.93 -0.42 0.55 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 34 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 35 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.03 0.65 7.80 -51.93 -0.41 0.24 16 38 H 0.03 0.79 6.67 -51.93 -0.35 0.44 16 39 H 0.13 2.12 6.62 -51.93 -0.34 1.78 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.81 6.36 -51.93 -0.33 0.48 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -31.77 338.65 -8.87 -40.65 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.91 Total: 5.73 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.83 Total: -4.13 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.26 Total: -54.93 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.05 Total: -9.94 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.77 -8.87 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716834348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.232 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds