Wall clock time and date at job start Tue Mar 31 2020 00:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32995 * 120.00225 * 2 1 4 4 C 1.47105 * 120.00066 * 172.34594 * 3 2 1 5 5 O 1.21608 * 119.99862 * 354.00552 * 4 3 2 6 6 N 1.34779 * 119.99771 * 174.00435 * 4 3 2 7 7 C 1.46502 * 119.99817 * 180.02562 * 6 4 3 8 8 C 1.53000 * 110.63826 * 300.69857 * 7 6 4 9 9 C 1.55163 * 110.71805 * 177.56048 * 7 6 4 10 10 C 1.55393 * 101.36194 * 277.03907 * 9 7 6 11 11 N 1.47420 * 104.87626 * 323.02280 * 10 9 7 12 12 C 1.36943 * 125.64538 * 204.09855 * 11 10 9 13 13 H 1.08003 * 119.99673 * 180.02562 * 12 11 10 14 14 C 1.38806 * 119.99956 * 0.03735 * 12 11 10 15 15 N 1.31626 * 120.00298 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00011 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47069 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47052 * 120.00014 * 16 14 12 19 19 H 1.48500 * 109.47145 * 239.99945 * 16 14 12 20 20 C 1.47019 * 108.70410 * 24.12692 * 11 10 9 21 21 C 1.50698 * 120.00028 * 180.02562 * 2 1 3 22 22 C 1.52999 * 117.50134 * 287.99260 * 21 2 1 23 23 C 1.52994 * 60.03289 * 107.47735 * 22 21 2 24 24 H 1.08993 * 109.47029 * 270.00074 * 1 2 3 25 25 H 1.09003 * 109.47222 * 29.99900 * 1 2 3 26 26 H 1.08997 * 109.47134 * 149.99212 * 1 2 3 27 27 H 1.08001 * 120.00157 * 352.35119 * 3 2 1 28 28 H 0.97001 * 120.00029 * 0.02562 * 6 4 3 29 29 H 1.09001 * 109.47308 * 59.30307 * 8 7 6 30 30 H 1.09004 * 109.46958 * 179.30041 * 8 7 6 31 31 H 1.08996 * 109.47430 * 299.29817 * 8 7 6 32 32 H 1.08996 * 111.00685 * 35.21065 * 9 7 6 33 33 H 1.08997 * 111.00159 * 159.06377 * 9 7 6 34 34 H 1.09000 * 110.34197 * 204.16224 * 10 9 7 35 35 H 1.09003 * 110.43612 * 81.91998 * 10 9 7 36 36 H 0.97000 * 120.00007 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.88615 * 239.52357 * 20 11 10 38 38 H 1.09004 * 110.00768 * 118.43522 * 20 11 10 39 39 H 1.09005 * 115.55278 * 142.32341 * 21 2 1 40 40 H 1.08993 * 117.50234 * 214.98585 * 22 21 2 41 41 H 1.09006 * 117.49524 * 359.97438 * 22 21 2 42 42 H 1.09000 * 117.49971 * 107.50418 * 23 22 21 43 43 H 1.08999 * 117.50213 * 252.52301 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6332 1.1574 0.1697 5 8 4.2204 0.1220 0.4186 6 7 4.3211 2.3101 0.0493 7 6 5.7764 2.3156 0.2177 8 6 6.1602 1.8070 1.6087 9 6 6.3518 3.7360 -0.0255 10 6 6.4642 3.7595 -1.5752 11 7 6.8736 2.3927 -1.9457 12 6 7.5329 2.0405 -3.0932 13 1 7.7892 1.0068 -3.2731 14 6 7.8720 3.0119 -4.0248 15 7 7.5603 4.2718 -3.8052 16 14 8.7707 2.5315 -5.5904 17 1 9.0022 1.0646 -5.5979 18 1 7.9489 2.9083 -6.7684 19 1 10.0748 3.2393 -5.6497 20 6 6.4563 1.4702 -0.8797 21 6 2.2605 -1.3051 -0.0006 22 6 2.2507 -2.1271 1.2898 23 6 1.4400 -2.5948 0.0795 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6392 2.0829 -0.1245 28 1 3.8526 3.1361 -0.1489 29 1 5.7834 0.7928 1.7415 30 1 7.2457 1.8073 1.7089 31 1 5.7252 2.4584 2.3666 32 1 5.6639 4.5025 0.3313 33 1 7.3315 3.8455 0.4394 34 1 7.2193 4.4801 -1.8894 35 1 5.5004 4.0014 -2.0231 36 1 7.7976 4.9507 -4.4561 37 1 7.3275 0.9603 -0.4685 38 1 5.7510 0.7388 -1.2744 39 1 3.1696 -1.3228 -0.6017 40 1 3.1531 -2.6858 1.5375 41 1 1.6995 -1.7237 2.1393 42 1 1.8091 -3.4614 -0.4691 43 1 0.3555 -2.4989 0.1326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716834348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:40 Heat of formation + Delta-G solvation = 13.990087 kcal Electronic energy + Delta-G solvation = -22387.322654 eV Core-core repulsion = 19240.718152 eV Total energy + Delta-G solvation = -3146.604502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.27212 -39.44678 -38.15013 -35.66225 -34.34436 -33.50751 -31.68587 -30.36742 -28.73263 -27.55512 -25.53321 -24.42606 -23.21234 -22.39880 -22.09205 -20.40746 -19.58389 -18.84045 -17.93396 -17.16868 -16.76160 -16.39592 -15.89813 -15.69115 -15.37908 -14.96730 -14.48738 -14.19654 -14.05210 -14.01045 -13.79859 -13.57531 -13.30221 -13.14419 -13.07778 -12.84003 -12.79368 -12.41847 -12.12113 -12.05040 -12.03370 -11.95374 -11.73862 -11.62996 -11.45831 -11.21203 -10.77340 -10.32115 -9.97704 -9.66436 -8.89942 -7.80476 -5.24182 0.44918 1.43656 1.44416 1.55150 2.32001 2.46920 2.47352 3.08370 3.28859 3.60974 3.67303 3.71140 3.92873 4.03092 4.06695 4.18763 4.22064 4.28205 4.46826 4.62942 4.66139 4.71244 4.74026 4.82994 4.86662 4.87937 4.92518 4.98059 5.01154 5.08605 5.12097 5.27088 5.28235 5.36248 5.40920 5.47654 5.60686 5.68111 5.76499 5.81816 6.29249 6.78802 7.09646 7.46722 7.75531 8.39461 9.21110 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020221 B = 0.004546 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.383384 B = 6158.058147 C = 6675.259666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.001 4.001 3 C -0.241 4.241 4 C 0.535 3.465 5 O -0.564 6.564 6 N -0.705 5.705 7 C 0.172 3.828 8 C -0.139 4.139 9 C -0.128 4.128 10 C 0.156 3.844 11 N -0.623 5.623 12 C -0.243 4.243 13 H 0.068 0.932 14 C -0.060 4.060 15 N -0.944 5.944 16 Si 0.979 3.021 17 H -0.274 1.274 18 H -0.289 1.289 19 H -0.285 1.285 20 C 0.139 3.861 21 C -0.136 4.136 22 C -0.153 4.153 23 C -0.169 4.169 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.152 0.848 28 H 0.407 0.593 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.076 0.924 35 H -0.008 1.008 36 H 0.249 0.751 37 H 0.018 0.982 38 H 0.006 0.994 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.361 -5.264 11.956 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.003 4.003 3 C -0.261 4.261 4 C 0.326 3.674 5 O -0.446 6.446 6 N -0.356 5.356 7 C 0.085 3.915 8 C -0.197 4.197 9 C -0.167 4.167 10 C 0.031 3.969 11 N -0.349 5.349 12 C -0.372 4.372 13 H 0.086 0.914 14 C -0.253 4.253 15 N -0.594 5.594 16 Si 0.807 3.193 17 H -0.199 1.199 18 H -0.216 1.216 19 H -0.212 1.212 20 C 0.013 3.987 21 C -0.154 4.154 22 C -0.190 4.190 23 C -0.206 4.206 24 H 0.114 0.886 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.170 0.830 28 H 0.243 0.757 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.010 0.990 36 H 0.059 0.941 37 H 0.036 0.964 38 H 0.024 0.976 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.846 -5.902 11.954 19.953 hybrid contribution 0.769 0.230 -1.361 1.580 sum -14.077 -5.672 10.593 18.508 Atomic orbital electron populations 1.21081 0.88173 1.04545 1.04110 1.22101 0.97022 0.92262 0.88878 1.22521 0.91940 1.00235 1.11448 1.19054 0.88947 0.82989 0.76361 1.90704 1.71796 1.32342 1.49718 1.45852 1.06738 1.10955 1.72104 1.21085 0.79951 0.96117 0.94345 1.21940 1.01595 1.02112 0.94073 1.23278 1.01623 0.94607 0.97170 1.21826 0.97288 0.87405 0.90340 1.44786 1.66605 1.04198 1.19331 1.19411 1.28697 0.93418 0.95709 0.91368 1.25551 1.02420 0.95499 1.01809 1.70025 1.52873 1.00258 1.36203 0.85010 0.77770 0.77510 0.79025 1.19852 1.21588 1.21188 1.21647 0.95204 0.92584 0.89288 1.21195 1.00282 0.90289 1.03628 1.22770 1.02083 1.02374 0.91805 1.23260 0.99419 0.96661 1.01211 0.88635 0.89707 0.89795 0.83050 0.75706 0.92192 0.91663 0.90618 0.88146 0.90016 0.90635 0.99004 0.94136 0.96449 0.97616 0.89473 0.89916 0.88015 0.88653 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.45 71.23 0.67 -0.98 16 2 C 0.00 -0.02 5.80 -17.62 -0.10 -0.12 16 3 C -0.24 -6.06 9.63 23.43 0.23 -5.83 16 4 C 0.54 17.75 6.89 86.57 0.60 18.34 16 5 O -0.56 -21.90 10.39 -4.05 -0.04 -21.95 16 6 N -0.71 -22.76 5.14 -421.10 -2.17 -24.93 16 7 C 0.17 6.26 0.80 4.79 0.00 6.27 16 8 C -0.14 -4.38 8.41 71.98 0.61 -3.77 16 9 C -0.13 -4.62 6.11 32.16 0.20 -4.42 16 10 C 0.16 7.68 5.88 87.03 0.51 8.19 16 11 N -0.62 -34.05 3.40 -691.04 -2.35 -36.40 16 12 C -0.24 -14.50 10.27 84.03 0.86 -13.64 16 13 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 14 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 15 N -0.94 -56.50 10.09 21.65 0.22 -56.28 16 16 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 20 C 0.14 6.60 6.16 86.73 0.53 7.14 16 21 C -0.14 -3.57 4.12 -11.52 -0.05 -3.62 16 22 C -0.15 -3.46 10.22 30.59 0.31 -3.15 16 23 C -0.17 -3.22 9.78 30.62 0.30 -2.92 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 0.96 8.06 -2.39 -0.02 0.94 16 26 H 0.08 0.97 6.45 -2.39 -0.02 0.95 16 27 H 0.15 2.85 8.04 -2.91 -0.02 2.83 16 28 H 0.41 11.12 8.46 -92.71 -0.78 10.33 16 29 H 0.06 2.09 6.20 -2.39 -0.01 2.08 16 30 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.10 2.88 8.06 -2.39 -0.02 2.86 16 33 H 0.08 2.87 8.05 -2.39 -0.02 2.85 16 34 H 0.08 4.21 5.87 -2.39 -0.01 4.20 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 37 H 0.02 0.85 7.80 -2.39 -0.02 0.83 16 38 H 0.01 0.30 6.67 -2.38 -0.02 0.29 16 39 H 0.09 3.06 6.62 -2.38 -0.02 3.04 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.12 1.65 6.36 -2.39 -0.02 1.63 16 Total: -1.00 -72.21 338.65 3.05 -69.16 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.22 Total: 22.86 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.14 Total: -1.54 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -4.29 Total: -117.61 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.04 Total: -21.95 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -72.21 3.05 -69.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716834348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.152 kcal (2) G-P(sol) polarization free energy of solvation -72.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds