Wall clock time and date at job start Mon Mar 30 2020 23:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47121 * 120.00153 * 2 1 4 4 C 1.50703 * 119.99859 * 354.82370 * 3 2 1 5 5 C 1.32872 * 119.99845 * 174.81697 * 3 2 1 6 6 C 1.50694 * 120.00152 * 6.12278 * 5 3 2 7 7 C 1.50695 * 109.47254 * 125.99575 * 6 5 3 8 8 O 1.21278 * 120.00187 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00324 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00211 * 180.02562 * 9 7 6 11 11 C 1.53000 * 110.88804 * 59.30039 * 10 9 7 12 12 C 1.55156 * 111.00305 * 183.17719 * 10 9 7 13 13 C 1.54430 * 102.89367 * 82.59736 * 12 10 9 14 14 N 1.47017 * 107.28216 * 22.18046 * 13 12 10 15 15 C 1.36935 * 125.65040 * 181.02821 * 14 13 12 16 16 H 1.07998 * 120.00273 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99938 * 0.03977 * 15 14 13 18 18 N 1.31621 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00163 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46762 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46886 * 120.00241 * 19 17 15 22 22 H 1.48502 * 109.47208 * 240.00779 * 19 17 15 23 23 C 1.47424 * 108.70129 * 1.06544 * 14 13 12 24 24 H 1.07997 * 119.99846 * 359.97438 * 1 2 3 25 25 H 1.07996 * 119.99700 * 179.72151 * 1 2 3 26 26 H 1.07997 * 119.99846 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47104 * 89.99586 * 4 3 2 28 28 H 1.08997 * 109.46885 * 209.99696 * 4 3 2 29 29 H 1.09000 * 109.47161 * 329.99595 * 4 3 2 30 30 H 1.07997 * 119.99281 * 186.11543 * 5 3 2 31 31 H 1.09002 * 109.47285 * 245.99916 * 6 5 3 32 32 H 1.08998 * 109.47090 * 5.99985 * 6 5 3 33 33 H 0.96995 * 119.99799 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.46969 * 60.69930 * 11 10 9 35 35 H 1.09001 * 109.47500 * 180.70342 * 11 10 9 36 36 H 1.09003 * 109.46718 * 300.70236 * 11 10 9 37 37 H 1.09006 * 110.71903 * 200.93239 * 12 10 9 38 38 H 1.09004 * 110.72528 * 324.21152 * 12 10 9 39 39 H 1.09000 * 109.87254 * 262.76457 * 13 12 10 40 40 H 1.08998 * 109.88260 * 141.61080 * 13 12 10 41 41 H 0.97002 * 120.00027 * 179.97438 * 18 17 15 42 42 H 1.09002 * 110.36756 * 217.02750 * 23 14 13 43 43 H 1.09010 * 110.36810 * 94.71168 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3154 2.5766 -0.1178 5 6 3.3890 1.2764 0.1040 6 6 4.1487 -0.0249 0.0829 7 6 5.2098 0.0302 -0.9857 8 8 5.3370 1.0280 -1.6632 9 7 6.0182 -1.0291 -1.1880 10 6 7.0501 -0.9754 -2.2265 11 6 8.0242 0.1759 -1.9685 12 6 7.8032 -2.3278 -2.3327 13 6 6.8682 -3.1737 -3.2243 14 7 6.0296 -2.2388 -3.9885 15 6 5.0527 -2.5899 -4.8815 16 1 4.4897 -1.8244 -5.3948 17 6 4.7858 -3.9298 -5.1269 18 7 5.4713 -4.8628 -4.5008 19 14 3.4527 -4.4089 -6.3446 20 1 2.8339 -3.1826 -6.9089 21 1 4.0500 -5.2114 -7.4421 22 1 2.4148 -5.2135 -5.6513 23 6 6.4152 -0.8605 -3.6347 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 -0.0045 26 1 1.8687 -0.9353 -0.0004 27 1 1.0545 2.9369 0.8773 28 1 1.9442 3.3133 -0.6177 29 1 0.4059 2.4215 -0.6981 30 1 3.9211 2.2109 0.2034 31 1 4.6182 -0.1873 1.0531 32 1 3.4612 -0.8436 -0.1297 33 1 5.9173 -1.8268 -0.6454 34 1 8.5162 0.0271 -1.0073 35 1 8.7734 0.2023 -2.7599 36 1 7.4771 1.1185 -1.9545 37 1 8.7735 -2.1924 -2.8106 38 1 7.9167 -2.7843 -1.3494 39 1 6.2402 -3.8115 -2.6023 40 1 7.4593 -3.7844 -3.9068 41 1 5.2846 -5.7992 -4.6720 42 1 5.5360 -0.2169 -3.6031 43 1 7.1430 -0.4750 -4.3488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716846323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:05 Heat of formation + Delta-G solvation = 20.373987 kcal Electronic energy + Delta-G solvation = -22236.497562 eV Core-core repulsion = 19090.169887 eV Total energy + Delta-G solvation = -3146.327676 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.82478 -37.62320 -36.58629 -33.87140 -32.26282 -31.56093 -30.23857 -29.48059 -28.61643 -25.70585 -25.42440 -23.59461 -21.93938 -20.76349 -20.07518 -18.95520 -17.59591 -17.07902 -16.47952 -15.78116 -15.55011 -14.86965 -14.58627 -14.34002 -13.78213 -13.58202 -13.39342 -13.14437 -12.78702 -12.59451 -12.36048 -12.20569 -11.90569 -11.88445 -11.68108 -11.62114 -11.50954 -10.87935 -10.86243 -10.59712 -10.45232 -10.32706 -10.32637 -10.02906 -9.95524 -9.63716 -9.19131 -8.61833 -8.47705 -8.17711 -6.77218 -5.68784 -3.00292 1.37326 2.99323 3.08649 3.41043 3.47427 3.49822 3.67624 4.53016 4.69257 4.88281 4.98289 5.10490 5.22554 5.42224 5.43643 5.49877 5.50622 5.53706 5.61272 5.64813 5.70935 5.74532 5.76023 6.00809 6.05211 6.17689 6.19307 6.39156 6.39380 6.43075 6.48864 6.57947 6.72280 6.73825 6.85978 6.96692 7.19925 7.57405 7.58925 7.82725 7.99040 8.28582 8.68152 9.26229 9.86236 10.52503 11.43394 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.005830 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.368045 B = 4801.333492 C = 6365.111267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.122 4.122 3 C -0.114 4.114 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.121 4.121 7 C 0.520 3.480 8 O -0.540 6.540 9 N -0.704 5.704 10 C 0.157 3.843 11 C -0.150 4.150 12 C -0.147 4.147 13 C 0.178 3.822 14 N -0.603 5.603 15 C -0.219 4.219 16 H 0.076 0.924 17 C -0.010 4.010 18 N -0.925 5.925 19 Si 0.909 3.091 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.132 3.868 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.119 0.881 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.397 0.603 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.250 0.750 42 H 0.052 0.948 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 9.165 12.848 15.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.139 4.139 3 C -0.114 4.114 4 C -0.170 4.170 5 C -0.129 4.129 6 C -0.161 4.161 7 C 0.306 3.694 8 O -0.417 6.417 9 N -0.354 5.354 10 C 0.070 3.930 11 C -0.208 4.208 12 C -0.186 4.186 13 C 0.053 3.947 14 N -0.329 5.329 15 C -0.347 4.347 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.574 5.574 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.219 1.219 23 C 0.005 3.995 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.136 0.864 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.231 0.769 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -2.035 9.688 12.247 15.748 hybrid contribution -0.719 -0.947 -0.441 1.268 sum -2.754 8.741 11.807 14.946 Atomic orbital electron populations 1.24373 0.95737 1.01861 1.00569 1.22030 0.95408 0.96504 0.99978 1.20543 0.94125 0.94317 1.02421 1.20757 1.00235 0.94374 1.01630 1.22762 0.93667 0.97705 0.98815 1.20860 0.97596 0.98649 0.98977 1.20307 0.81548 0.83153 0.84355 1.90633 1.70489 1.32179 1.48433 1.45822 1.34912 1.17251 1.37384 1.21458 0.87398 0.95438 0.88716 1.22001 0.98491 0.99511 1.00840 1.23245 0.99547 0.95056 1.00710 1.21162 0.90819 0.90343 0.92377 1.44449 1.40633 0.99308 1.48543 1.19114 1.09340 0.91460 1.14822 0.90589 1.24753 0.99882 0.95611 1.00353 1.69960 1.42822 0.99241 1.45331 0.86072 0.81209 0.78153 0.80581 1.20547 1.21794 1.21859 1.21875 0.97713 0.88768 0.91107 0.88279 0.88202 0.86370 0.91842 0.91562 0.91605 0.86372 0.88410 0.87969 0.76885 0.93269 0.92012 0.90753 0.90976 0.91803 0.93686 0.93901 0.93962 0.92930 0.95854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 14.07 28.88 0.41 -1.62 16 2 C -0.12 -1.48 9.30 -37.83 -0.35 -1.83 16 3 C -0.11 -1.41 5.98 -102.87 -0.61 -2.03 16 4 C -0.11 -1.18 9.39 36.01 0.34 -0.84 16 5 C -0.11 -1.43 8.43 -36.16 -0.30 -1.74 16 6 C -0.12 -1.53 5.94 -29.04 -0.17 -1.70 16 7 C 0.52 8.55 7.20 -10.99 -0.08 8.47 16 8 O -0.54 -10.57 12.84 5.56 0.07 -10.50 16 9 N -0.70 -11.43 5.18 -45.63 -0.24 -11.66 16 10 C 0.16 2.81 0.82 -129.68 -0.11 2.70 16 11 C -0.15 -2.34 8.57 37.16 0.32 -2.02 16 12 C -0.15 -2.62 5.99 -24.84 -0.15 -2.77 16 13 C 0.18 4.22 5.37 -3.01 -0.02 4.20 16 14 N -0.60 -15.63 3.39 -170.01 -0.58 -16.21 16 15 C -0.22 -6.26 10.28 -15.06 -0.15 -6.42 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -27.11 10.31 55.49 0.57 -26.54 16 19 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 C 0.13 2.96 6.13 -2.53 -0.02 2.95 16 24 H 0.10 0.95 6.30 -52.49 -0.33 0.61 16 25 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 26 H 0.12 1.41 5.83 -52.49 -0.31 1.11 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.07 0.65 6.66 -51.93 -0.35 0.30 16 30 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.27 5.33 -51.93 -0.28 0.99 16 33 H 0.40 5.66 8.50 -40.82 -0.35 5.31 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 36 H 0.07 1.27 6.23 -51.93 -0.32 0.94 16 37 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 38 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 39 H 0.04 1.16 7.38 -51.93 -0.38 0.78 16 40 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.05 1.28 6.59 -51.93 -0.34 0.94 16 43 H 0.02 0.53 8.03 -51.92 -0.42 0.11 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -32.49 342.88 -7.82 -40.31 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.80 Total: 4.93 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.00 Total: -3.04 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.24 Total: -54.41 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.49 -7.82 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716846323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.688 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds