Wall clock time and date at job start Mon Mar 30 2020 23:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47121 * 120.00153 * 2 1 4 4 C 1.50703 * 119.99859 * 354.82370 * 3 2 1 5 5 C 1.32872 * 119.99845 * 174.81697 * 3 2 1 6 6 C 1.50694 * 120.00152 * 6.12278 * 5 3 2 7 7 C 1.50695 * 109.47254 * 125.99575 * 6 5 3 8 8 O 1.21278 * 120.00187 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00324 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00211 * 180.02562 * 9 7 6 11 11 C 1.53000 * 110.88804 * 59.30039 * 10 9 7 12 12 C 1.55156 * 111.00305 * 183.17719 * 10 9 7 13 13 C 1.54430 * 102.89367 * 82.59736 * 12 10 9 14 14 N 1.47017 * 107.28216 * 22.18046 * 13 12 10 15 15 C 1.36935 * 125.65040 * 181.02821 * 14 13 12 16 16 H 1.07998 * 120.00273 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99938 * 0.03977 * 15 14 13 18 18 N 1.31621 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00163 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46762 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46886 * 120.00241 * 19 17 15 22 22 H 1.48502 * 109.47208 * 240.00779 * 19 17 15 23 23 C 1.47424 * 108.70129 * 1.06544 * 14 13 12 24 24 H 1.07997 * 119.99846 * 359.97438 * 1 2 3 25 25 H 1.07996 * 119.99700 * 179.72151 * 1 2 3 26 26 H 1.07997 * 119.99846 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47104 * 89.99586 * 4 3 2 28 28 H 1.08997 * 109.46885 * 209.99696 * 4 3 2 29 29 H 1.09000 * 109.47161 * 329.99595 * 4 3 2 30 30 H 1.07997 * 119.99281 * 186.11543 * 5 3 2 31 31 H 1.09002 * 109.47285 * 245.99916 * 6 5 3 32 32 H 1.08998 * 109.47090 * 5.99985 * 6 5 3 33 33 H 0.96995 * 119.99799 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.46969 * 60.69930 * 11 10 9 35 35 H 1.09001 * 109.47500 * 180.70342 * 11 10 9 36 36 H 1.09003 * 109.46718 * 300.70236 * 11 10 9 37 37 H 1.09006 * 110.71903 * 200.93239 * 12 10 9 38 38 H 1.09004 * 110.72528 * 324.21152 * 12 10 9 39 39 H 1.09000 * 109.87254 * 262.76457 * 13 12 10 40 40 H 1.08998 * 109.88260 * 141.61080 * 13 12 10 41 41 H 0.97002 * 120.00027 * 179.97438 * 18 17 15 42 42 H 1.09002 * 110.36756 * 217.02750 * 23 14 13 43 43 H 1.09010 * 110.36810 * 94.71168 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3154 2.5766 -0.1178 5 6 3.3890 1.2764 0.1040 6 6 4.1487 -0.0249 0.0829 7 6 5.2098 0.0302 -0.9857 8 8 5.3370 1.0280 -1.6632 9 7 6.0182 -1.0291 -1.1880 10 6 7.0501 -0.9754 -2.2265 11 6 8.0242 0.1759 -1.9685 12 6 7.8032 -2.3278 -2.3327 13 6 6.8682 -3.1737 -3.2243 14 7 6.0296 -2.2388 -3.9885 15 6 5.0527 -2.5899 -4.8815 16 1 4.4897 -1.8244 -5.3948 17 6 4.7858 -3.9298 -5.1269 18 7 5.4713 -4.8628 -4.5008 19 14 3.4527 -4.4089 -6.3446 20 1 2.8339 -3.1826 -6.9089 21 1 4.0500 -5.2114 -7.4421 22 1 2.4148 -5.2135 -5.6513 23 6 6.4152 -0.8605 -3.6347 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 -0.0045 26 1 1.8687 -0.9353 -0.0004 27 1 1.0545 2.9369 0.8773 28 1 1.9442 3.3133 -0.6177 29 1 0.4059 2.4215 -0.6981 30 1 3.9211 2.2109 0.2034 31 1 4.6182 -0.1873 1.0531 32 1 3.4612 -0.8436 -0.1297 33 1 5.9173 -1.8268 -0.6454 34 1 8.5162 0.0271 -1.0073 35 1 8.7734 0.2023 -2.7599 36 1 7.4771 1.1185 -1.9545 37 1 8.7735 -2.1924 -2.8106 38 1 7.9167 -2.7843 -1.3494 39 1 6.2402 -3.8115 -2.6023 40 1 7.4593 -3.7844 -3.9068 41 1 5.2846 -5.7992 -4.6720 42 1 5.5360 -0.2169 -3.6031 43 1 7.1430 -0.4750 -4.3488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716846323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:04 Heat of formation + Delta-G solvation = 0.072843 kcal Electronic energy + Delta-G solvation = -22237.377886 eV Core-core repulsion = 19090.169887 eV Total energy + Delta-G solvation = -3147.207999 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21073 -39.06484 -37.69182 -35.63238 -33.75010 -32.85999 -31.70899 -30.67107 -30.20167 -27.52441 -26.50148 -25.34407 -22.93837 -22.28894 -21.68106 -20.40492 -19.01529 -18.45207 -17.87805 -17.13246 -16.79897 -16.66826 -15.91419 -15.74624 -15.54754 -14.93466 -14.72795 -14.21644 -14.12109 -13.88516 -13.59556 -13.50036 -13.40017 -13.26961 -13.07376 -12.94082 -12.79210 -12.73286 -12.43597 -12.09830 -12.02615 -11.96411 -11.70092 -11.55873 -11.48153 -11.31842 -10.73004 -10.55227 -9.92874 -9.10214 -8.87218 -7.87192 -5.20728 0.45331 1.42268 1.42872 1.53399 1.77974 2.06603 2.46369 2.47081 3.31060 3.58923 3.70820 3.76929 3.95211 4.01879 4.06308 4.20600 4.24774 4.48389 4.60446 4.64555 4.66837 4.69875 4.77946 4.82341 4.86859 4.88688 4.92379 4.93241 5.03271 5.09828 5.16515 5.37769 5.41704 5.49211 5.59442 5.65398 5.72285 5.80048 5.83195 6.05219 6.19058 6.72689 7.10900 7.41462 7.76395 8.40838 9.22814 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.005830 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.368045 B = 4801.333492 C = 6365.111267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.149 4.149 3 C -0.115 4.115 4 C -0.114 4.114 5 C -0.132 4.132 6 C -0.111 4.111 7 C 0.514 3.486 8 O -0.575 6.575 9 N -0.702 5.702 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.128 4.128 13 C 0.185 3.815 14 N -0.621 5.621 15 C -0.240 4.240 16 H 0.066 0.934 17 C -0.058 4.058 18 N -0.945 5.945 19 Si 0.972 3.028 20 H -0.275 1.275 21 H -0.289 1.289 22 H -0.287 1.287 23 C 0.129 3.871 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.408 0.592 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.019 0.981 40 H 0.007 0.993 41 H 0.248 0.752 42 H 0.026 0.974 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 9.425 14.255 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C -0.115 4.115 4 C -0.171 4.171 5 C -0.151 4.151 6 C -0.150 4.150 7 C 0.302 3.698 8 O -0.455 6.455 9 N -0.353 5.353 10 C 0.079 3.921 11 C -0.198 4.198 12 C -0.167 4.167 13 C 0.060 3.940 14 N -0.347 5.347 15 C -0.370 4.370 16 H 0.084 0.916 17 C -0.251 4.251 18 N -0.594 5.594 19 Si 0.801 3.199 20 H -0.199 1.199 21 H -0.216 1.216 22 H -0.214 1.214 23 C 0.003 3.997 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.122 0.878 33 H 0.244 0.756 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.037 0.963 40 H 0.025 0.975 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -2.302 9.953 13.679 17.073 hybrid contribution -0.712 -1.012 -0.922 1.543 sum -3.014 8.941 12.757 15.868 Atomic orbital electron populations 1.24626 0.95346 1.03064 0.98083 1.22127 0.96131 0.96394 1.02021 1.20830 0.94284 0.95262 1.01170 1.20806 1.00094 0.93379 1.02798 1.22786 0.94022 0.97697 1.00547 1.20835 0.96428 0.98675 0.99085 1.20995 0.81758 0.82428 0.84580 1.90617 1.71466 1.33526 1.49882 1.45828 1.34739 1.17833 1.36892 1.21315 0.87785 0.96444 0.86530 1.21916 0.97835 0.97336 1.02742 1.23117 0.98580 0.93735 1.01224 1.20964 0.90623 0.90518 0.91852 1.44691 1.40449 1.01169 1.48356 1.19333 1.10246 0.91654 1.15731 0.91596 1.25497 1.02005 0.95474 1.02124 1.70150 1.43841 0.99178 1.46247 0.85108 0.78663 0.77763 0.78411 1.19938 1.21554 1.21425 1.21978 0.96840 0.86639 0.94260 0.86974 0.87135 0.86688 0.89983 0.91982 0.91059 0.86706 0.85154 0.87801 0.75591 0.90431 0.91057 0.92341 0.89266 0.88301 0.96259 0.97463 0.94278 0.95521 0.96139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 14.07 66.64 0.94 -2.48 16 2 C -0.15 -3.46 9.30 23.43 0.22 -3.24 16 3 C -0.12 -2.75 5.98 -18.71 -0.11 -2.87 16 4 C -0.11 -2.22 9.39 71.24 0.67 -1.55 16 5 C -0.13 -3.32 8.43 24.51 0.21 -3.12 16 6 C -0.11 -2.68 5.94 29.10 0.17 -2.50 16 7 C 0.51 16.57 7.20 87.66 0.63 17.20 16 8 O -0.57 -22.65 12.84 -3.02 -0.04 -22.69 16 9 N -0.70 -21.90 5.18 -416.67 -2.16 -24.05 16 10 C 0.17 5.75 0.82 4.99 0.00 5.75 16 11 C -0.14 -4.05 8.57 71.98 0.62 -3.43 16 12 C -0.13 -4.33 5.99 31.82 0.19 -4.14 16 13 C 0.19 8.88 5.37 86.77 0.47 9.34 16 14 N -0.62 -32.85 3.39 -691.80 -2.35 -35.20 16 15 C -0.24 -14.11 10.28 84.03 0.86 -13.24 16 16 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 17 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16 18 N -0.95 -56.37 10.31 21.65 0.22 -56.14 16 19 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 C 0.13 5.87 6.13 86.85 0.53 6.40 16 24 H 0.11 1.87 6.30 -2.91 -0.02 1.85 16 25 H 0.11 1.90 8.06 -2.91 -0.02 1.88 16 26 H 0.12 2.67 5.83 -2.91 -0.02 2.66 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.25 8.07 -2.39 -0.02 1.23 16 29 H 0.07 1.29 6.66 -2.39 -0.02 1.27 16 30 H 0.11 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.13 2.22 8.14 -2.39 -0.02 2.21 16 32 H 0.10 2.49 5.33 -2.39 -0.01 2.48 16 33 H 0.41 10.86 8.50 -92.71 -0.79 10.07 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 36 H 0.06 1.92 6.23 -2.39 -0.01 1.90 16 37 H 0.09 2.75 8.04 -2.38 -0.02 2.73 16 38 H 0.10 2.69 8.07 -2.39 -0.02 2.67 16 39 H 0.02 1.01 7.38 -2.39 -0.02 0.99 16 40 H 0.01 0.39 7.51 -2.39 -0.02 0.37 16 41 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.03 1.34 6.59 -2.39 -0.02 1.32 16 43 H 0.02 0.95 8.03 -2.38 -0.02 0.93 16 Total: -1.00 -72.03 342.88 3.78 -68.25 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.21 Total: 21.69 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 5.86 Total: -0.74 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -4.28 Total: -115.40 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.04 Total: -22.69 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -72.03 3.78 -68.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716846323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.322 kcal (2) G-P(sol) polarization free energy of solvation -72.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds