Wall clock time and date at job start Mon Mar 30 2020 23:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47115 * 120.00349 * 2 1 4 4 C 1.50709 * 119.99844 * 5.49684 * 3 2 1 5 5 C 1.32872 * 120.00577 * 185.49336 * 3 2 1 6 6 C 1.50702 * 119.99256 * 6.25671 * 5 3 2 7 7 C 1.50701 * 109.46963 * 126.12170 * 6 5 3 8 8 O 1.21275 * 120.00313 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00050 * 179.97438 * 7 6 5 10 10 C 1.46492 * 120.00177 * 179.97438 * 9 7 6 11 11 C 1.52997 * 110.78257 * 303.24696 * 10 9 7 12 12 C 1.55162 * 110.71869 * 180.02562 * 10 9 7 13 13 C 1.54909 * 101.58290 * 277.13886 * 12 10 9 14 14 N 1.47423 * 104.83476 * 322.99587 * 13 12 10 15 15 C 1.36930 * 125.64466 * 204.09439 * 14 13 12 16 16 H 1.08004 * 119.99919 * 180.02562 * 15 14 13 17 17 C 1.38818 * 120.00417 * 0.02562 * 15 14 13 18 18 N 1.31614 * 119.99572 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00020 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47206 * 269.99947 * 19 17 15 21 21 H 1.48498 * 109.47374 * 30.00329 * 19 17 15 22 22 H 1.48503 * 109.46953 * 150.00306 * 19 17 15 23 23 C 1.47019 * 108.70237 * 24.35242 * 14 13 12 24 24 H 1.08001 * 120.00236 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99552 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99981 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47387 * 270.00083 * 4 3 2 28 28 H 1.09006 * 109.46715 * 30.00141 * 4 3 2 29 29 H 1.09006 * 109.47054 * 149.99541 * 4 3 2 30 30 H 1.07993 * 120.00248 * 186.25022 * 5 3 2 31 31 H 1.08989 * 109.47569 * 6.11705 * 6 5 3 32 32 H 1.09005 * 109.46872 * 246.11842 * 6 5 3 33 33 H 0.97007 * 119.99683 * 0.02562 * 9 7 6 34 34 H 1.09003 * 109.47067 * 296.75863 * 11 10 9 35 35 H 1.08995 * 109.47274 * 56.76159 * 11 10 9 36 36 H 1.09003 * 109.47328 * 176.76199 * 11 10 9 37 37 H 1.09003 * 110.99707 * 159.06563 * 12 10 9 38 38 H 1.08995 * 111.00430 * 35.21944 * 12 10 9 39 39 H 1.08998 * 110.36160 * 204.15017 * 13 12 10 40 40 H 1.09002 * 110.45470 * 81.88224 * 13 12 10 41 41 H 0.97002 * 119.99689 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.88111 * 118.13631 * 23 14 13 43 43 H 1.09003 * 109.87916 * 239.29905 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3160 2.5762 0.1250 5 6 3.3885 1.2767 -0.1102 6 6 4.1249 -0.0109 -0.3763 7 6 5.0035 0.1545 -1.5895 8 8 5.0289 1.2134 -2.1801 9 7 5.7612 -0.8744 -2.0181 10 6 6.6149 -0.7139 -3.1977 11 6 5.7887 -0.2827 -4.4111 12 6 7.3881 -2.0251 -3.4983 13 6 8.5908 -1.9061 -2.5293 14 7 8.9359 -0.4729 -2.5302 15 6 10.1614 0.0530 -2.2194 16 1 10.3137 1.1219 -2.2493 17 6 11.2081 -0.7875 -1.8659 18 7 11.0226 -2.0900 -1.8299 19 14 12.8796 -0.0699 -1.4413 20 1 13.7033 0.0289 -2.6730 21 1 12.7031 1.2825 -0.8540 22 1 13.5615 -0.9508 -0.4593 23 6 7.7446 0.2986 -2.9139 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8687 -0.9353 0.0004 27 1 1.0504 2.9394 -0.8677 28 1 0.4092 2.4195 0.7093 29 1 1.9473 3.3115 0.6241 30 1 3.9369 2.2015 -0.0091 31 1 3.4060 -0.8105 -0.5546 32 1 4.7411 -0.2622 0.4871 33 1 5.7407 -1.7216 -1.5459 34 1 5.0719 -1.0655 -4.6593 35 1 5.2547 0.6385 -4.1783 36 1 6.4510 -0.1140 -5.2603 37 1 7.7230 -2.0521 -4.5353 38 1 6.7813 -2.8993 -3.2626 39 1 9.4304 -2.4988 -2.8924 40 1 8.3059 -2.2272 -1.5274 41 1 11.7541 -2.6774 -1.5832 42 1 7.4545 0.9621 -2.0992 43 1 7.9531 0.8800 -3.8120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716846324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:08 Heat of formation + Delta-G solvation = 21.848125 kcal Electronic energy + Delta-G solvation = -21909.737697 eV Core-core repulsion = 18763.473944 eV Total energy + Delta-G solvation = -3146.263752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.91825 -37.69197 -36.68781 -33.95363 -32.34932 -31.62832 -30.29968 -29.50797 -28.63527 -25.74250 -25.49788 -23.59181 -22.04437 -20.73695 -20.24505 -18.96425 -17.73101 -17.11033 -16.63508 -15.80699 -15.62384 -14.97601 -14.63356 -14.43092 -13.73767 -13.65417 -13.45305 -13.04673 -12.84237 -12.66393 -12.47299 -12.32871 -12.16002 -11.83231 -11.74836 -11.55507 -11.52277 -10.93083 -10.85215 -10.75767 -10.57071 -10.37701 -10.30958 -10.07991 -9.91459 -9.64290 -9.21098 -8.64822 -8.57579 -8.30372 -6.80041 -5.64221 -3.04462 1.23818 2.87904 2.96609 3.41294 3.46411 3.48469 3.59948 4.50928 4.56517 4.74318 4.90716 5.01711 5.21058 5.29603 5.36876 5.42179 5.46479 5.50987 5.53333 5.59992 5.62762 5.63257 5.76676 5.90988 6.08022 6.20137 6.24781 6.26225 6.30505 6.39722 6.48681 6.55192 6.61847 6.74454 6.83480 6.84785 7.18079 7.46098 7.64750 7.82214 7.92070 8.36549 8.59558 9.24415 9.85149 10.50205 11.40136 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026077 B = 0.003726 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.492864 B = 7513.691123 C = 7885.754039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.120 4.120 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.105 4.105 6 C -0.122 4.122 7 C 0.518 3.482 8 O -0.537 6.537 9 N -0.710 5.710 10 C 0.159 3.841 11 C -0.152 4.152 12 C -0.146 4.146 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.217 4.217 16 H 0.076 0.924 17 C -0.013 4.013 18 N -0.925 5.925 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.282 1.282 22 H -0.291 1.291 23 C 0.138 3.862 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.397 0.603 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.010 0.990 41 H 0.251 0.749 42 H 0.030 0.970 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.781 0.690 2.273 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.138 4.138 3 C -0.121 4.121 4 C -0.169 4.169 5 C -0.124 4.124 6 C -0.162 4.162 7 C 0.304 3.696 8 O -0.414 6.414 9 N -0.361 5.361 10 C 0.073 3.927 11 C -0.210 4.210 12 C -0.185 4.185 13 C 0.028 3.972 14 N -0.330 5.330 15 C -0.346 4.346 16 H 0.094 0.906 17 C -0.208 4.208 18 N -0.574 5.574 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.208 1.208 22 H -0.217 1.217 23 C 0.011 3.989 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.231 0.769 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.028 0.972 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -18.536 1.401 1.910 18.686 hybrid contribution 0.912 -0.164 0.568 1.087 sum -17.624 1.237 2.477 17.840 Atomic orbital electron populations 1.24382 0.95740 1.01882 1.00708 1.21985 0.95328 0.96412 1.00029 1.20523 0.93848 0.94270 1.03460 1.20757 0.99882 0.94250 1.02017 1.22852 0.93934 0.97981 0.97593 1.20873 0.99177 0.98379 0.97733 1.20336 0.80013 0.83967 0.85261 1.90644 1.66366 1.26851 1.57524 1.46010 1.44207 1.15092 1.30749 1.21337 0.89444 0.97533 0.84347 1.22062 0.99988 1.02345 0.96605 1.23351 0.98816 0.94280 1.02101 1.21929 0.94430 0.86861 0.94006 1.44511 1.06361 1.01762 1.80394 1.19102 0.85645 0.91914 1.37920 0.90569 1.24761 0.98313 0.95539 1.02208 1.69777 1.30853 1.01522 1.55259 0.86067 0.83841 0.77822 0.77774 1.21612 1.20776 1.21698 1.21599 0.86397 0.93109 0.97759 0.88300 0.88195 0.86545 0.91415 0.91986 0.91672 0.86154 0.88320 0.87921 0.76894 0.93313 0.90508 0.91906 0.90609 0.91935 0.87478 0.97196 0.93827 0.95204 0.95303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 14.07 28.88 0.41 -1.17 16 2 C -0.12 -1.15 9.20 -37.83 -0.35 -1.50 16 3 C -0.12 -1.31 5.98 -102.87 -0.61 -1.92 16 4 C -0.11 -1.03 9.39 36.01 0.34 -0.69 16 5 C -0.11 -1.28 8.43 -36.16 -0.30 -1.59 16 6 C -0.12 -1.43 5.92 -29.03 -0.17 -1.60 16 7 C 0.52 8.17 7.03 -10.98 -0.08 8.09 16 8 O -0.54 -10.27 13.01 5.56 0.07 -10.20 16 9 N -0.71 -11.13 5.14 -45.91 -0.24 -11.36 16 10 C 0.16 2.88 0.81 -129.98 -0.11 2.78 16 11 C -0.15 -2.47 8.44 37.16 0.31 -2.16 16 12 C -0.15 -2.68 6.07 -24.58 -0.15 -2.82 16 13 C 0.15 3.62 5.87 -2.53 -0.01 3.61 16 14 N -0.60 -15.77 3.39 -170.07 -0.58 -16.35 16 15 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 16 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 17 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 18 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 19 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.14 3.12 6.19 -3.06 -0.02 3.10 16 24 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 25 H 0.10 0.76 6.31 -52.48 -0.33 0.43 16 26 H 0.12 0.99 6.00 -52.49 -0.31 0.68 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.48 6.67 -51.93 -0.35 0.13 16 29 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 30 H 0.12 1.57 8.04 -52.49 -0.42 1.14 16 31 H 0.10 0.94 5.41 -51.94 -0.28 0.66 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.40 5.29 8.49 -40.82 -0.35 4.95 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 36 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 38 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 39 H 0.11 2.87 5.87 -51.93 -0.31 2.57 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.03 0.73 6.90 -51.93 -0.36 0.37 16 43 H 0.03 0.67 7.77 -51.93 -0.40 0.27 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -32.22 342.11 -7.80 -40.02 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.75 Total: 4.39 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.00 Total: -2.70 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.25 Total: -54.01 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.22 -7.80 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716846324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.868 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds