Wall clock time and date at job start Mon Mar 30 2020 23:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47115 * 120.00349 * 2 1 4 4 C 1.50709 * 119.99844 * 5.49684 * 3 2 1 5 5 C 1.32872 * 120.00577 * 185.49336 * 3 2 1 6 6 C 1.50702 * 119.99256 * 6.25671 * 5 3 2 7 7 C 1.50701 * 109.46963 * 126.12170 * 6 5 3 8 8 O 1.21275 * 120.00313 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00050 * 179.97438 * 7 6 5 10 10 C 1.46492 * 120.00177 * 179.97438 * 9 7 6 11 11 C 1.52997 * 110.78257 * 303.24696 * 10 9 7 12 12 C 1.55162 * 110.71869 * 180.02562 * 10 9 7 13 13 C 1.54909 * 101.58290 * 277.13886 * 12 10 9 14 14 N 1.47423 * 104.83476 * 322.99587 * 13 12 10 15 15 C 1.36930 * 125.64466 * 204.09439 * 14 13 12 16 16 H 1.08004 * 119.99919 * 180.02562 * 15 14 13 17 17 C 1.38818 * 120.00417 * 0.02562 * 15 14 13 18 18 N 1.31614 * 119.99572 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00020 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47206 * 269.99947 * 19 17 15 21 21 H 1.48498 * 109.47374 * 30.00329 * 19 17 15 22 22 H 1.48503 * 109.46953 * 150.00306 * 19 17 15 23 23 C 1.47019 * 108.70237 * 24.35242 * 14 13 12 24 24 H 1.08001 * 120.00236 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99552 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99981 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47387 * 270.00083 * 4 3 2 28 28 H 1.09006 * 109.46715 * 30.00141 * 4 3 2 29 29 H 1.09006 * 109.47054 * 149.99541 * 4 3 2 30 30 H 1.07993 * 120.00248 * 186.25022 * 5 3 2 31 31 H 1.08989 * 109.47569 * 6.11705 * 6 5 3 32 32 H 1.09005 * 109.46872 * 246.11842 * 6 5 3 33 33 H 0.97007 * 119.99683 * 0.02562 * 9 7 6 34 34 H 1.09003 * 109.47067 * 296.75863 * 11 10 9 35 35 H 1.08995 * 109.47274 * 56.76159 * 11 10 9 36 36 H 1.09003 * 109.47328 * 176.76199 * 11 10 9 37 37 H 1.09003 * 110.99707 * 159.06563 * 12 10 9 38 38 H 1.08995 * 111.00430 * 35.21944 * 12 10 9 39 39 H 1.08998 * 110.36160 * 204.15017 * 13 12 10 40 40 H 1.09002 * 110.45470 * 81.88224 * 13 12 10 41 41 H 0.97002 * 119.99689 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.88111 * 118.13631 * 23 14 13 43 43 H 1.09003 * 109.87916 * 239.29905 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3160 2.5762 0.1250 5 6 3.3885 1.2767 -0.1102 6 6 4.1249 -0.0109 -0.3763 7 6 5.0035 0.1545 -1.5895 8 8 5.0289 1.2134 -2.1801 9 7 5.7612 -0.8744 -2.0181 10 6 6.6149 -0.7139 -3.1977 11 6 5.7887 -0.2827 -4.4111 12 6 7.3881 -2.0251 -3.4983 13 6 8.5908 -1.9061 -2.5293 14 7 8.9359 -0.4729 -2.5302 15 6 10.1614 0.0530 -2.2194 16 1 10.3137 1.1219 -2.2493 17 6 11.2081 -0.7875 -1.8659 18 7 11.0226 -2.0900 -1.8299 19 14 12.8796 -0.0699 -1.4413 20 1 13.7033 0.0289 -2.6730 21 1 12.7031 1.2825 -0.8540 22 1 13.5615 -0.9508 -0.4593 23 6 7.7446 0.2986 -2.9139 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8687 -0.9353 0.0004 27 1 1.0504 2.9394 -0.8677 28 1 0.4092 2.4195 0.7093 29 1 1.9473 3.3115 0.6241 30 1 3.9369 2.2015 -0.0091 31 1 3.4060 -0.8105 -0.5546 32 1 4.7411 -0.2622 0.4871 33 1 5.7407 -1.7216 -1.5459 34 1 5.0719 -1.0655 -4.6593 35 1 5.2547 0.6385 -4.1783 36 1 6.4510 -0.1140 -5.2603 37 1 7.7230 -2.0521 -4.5353 38 1 6.7813 -2.8993 -3.2626 39 1 9.4304 -2.4988 -2.8924 40 1 8.3059 -2.2272 -1.5274 41 1 11.7541 -2.6774 -1.5832 42 1 7.4545 0.9621 -2.0992 43 1 7.9531 0.8800 -3.8120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716846324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:08 Heat of formation + Delta-G solvation = 1.755823 kcal Electronic energy + Delta-G solvation = -21910.608964 eV Core-core repulsion = 18763.473944 eV Total energy + Delta-G solvation = -3147.135020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27284 -39.09473 -37.70154 -35.69378 -33.76065 -32.86197 -31.69523 -30.64700 -30.23842 -27.56054 -26.51434 -25.33078 -22.87801 -22.28771 -21.78389 -20.42002 -19.02634 -18.45332 -17.96191 -17.16430 -16.79193 -16.65259 -16.00736 -15.66535 -15.46399 -14.93941 -14.64880 -14.28611 -14.19360 -14.04422 -13.65058 -13.42696 -13.32493 -13.24039 -13.18238 -12.87835 -12.78744 -12.78133 -12.41818 -12.07580 -12.04472 -11.96712 -11.69709 -11.55681 -11.48551 -11.28573 -10.76033 -10.56605 -9.97769 -9.10784 -8.89764 -7.79869 -5.23451 0.46171 1.44629 1.46225 1.55080 1.74139 2.06866 2.42744 2.48167 3.29410 3.61341 3.70920 3.76282 3.95950 4.02409 4.03844 4.18074 4.24142 4.44763 4.59079 4.63571 4.66874 4.69390 4.78792 4.81321 4.83032 4.88787 4.91828 4.96152 5.01422 5.10025 5.15871 5.34652 5.41719 5.52033 5.60022 5.61575 5.72186 5.80605 5.84471 6.06342 6.30233 6.69674 7.10266 7.38168 7.76079 8.39728 9.21429 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026077 B = 0.003726 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.492864 B = 7513.691123 C = 7885.754039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.147 4.147 3 C -0.107 4.107 4 C -0.117 4.117 5 C -0.140 4.140 6 C -0.108 4.108 7 C 0.512 3.488 8 O -0.575 6.575 9 N -0.706 5.706 10 C 0.170 3.830 11 C -0.142 4.142 12 C -0.127 4.127 13 C 0.155 3.845 14 N -0.623 5.623 15 C -0.244 4.244 16 H 0.069 0.931 17 C -0.060 4.060 18 N -0.943 5.943 19 Si 0.979 3.021 20 H -0.283 1.283 21 H -0.277 1.277 22 H -0.288 1.288 23 C 0.138 3.862 24 H 0.118 0.882 25 H 0.106 0.894 26 H 0.128 0.872 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.411 0.589 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.076 0.924 40 H -0.005 1.005 41 H 0.249 0.751 42 H 0.005 0.995 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.791 -0.406 2.394 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.108 4.108 4 C -0.174 4.174 5 C -0.159 4.159 6 C -0.147 4.147 7 C 0.301 3.699 8 O -0.454 6.454 9 N -0.358 5.358 10 C 0.083 3.917 11 C -0.200 4.200 12 C -0.166 4.166 13 C 0.030 3.970 14 N -0.349 5.349 15 C -0.373 4.373 16 H 0.086 0.914 17 C -0.253 4.253 18 N -0.592 5.592 19 Si 0.807 3.193 20 H -0.210 1.210 21 H -0.202 1.202 22 H -0.215 1.215 23 C 0.011 3.989 24 H 0.136 0.864 25 H 0.124 0.876 26 H 0.145 0.855 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.247 0.753 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.013 0.987 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -20.572 0.288 2.038 20.675 hybrid contribution 1.443 0.226 0.559 1.564 sum -19.128 0.514 2.598 19.311 Atomic orbital electron populations 1.24667 0.95348 1.03151 0.97558 1.22090 0.95981 0.96093 1.02294 1.20821 0.93526 0.95615 1.00798 1.20837 1.00470 0.93661 1.02383 1.22735 0.94616 0.97540 1.01010 1.20821 0.98978 0.99108 0.95817 1.21095 0.79831 0.83135 0.85875 1.90628 1.67576 1.28314 1.58915 1.45947 1.43554 1.15940 1.30318 1.21128 0.88733 0.95784 0.86077 1.21971 1.00028 1.02519 0.95520 1.23198 0.96728 0.95848 1.00794 1.21761 0.95580 0.85149 0.94477 1.44791 1.06624 1.03246 1.80285 1.19369 0.87305 0.91951 1.38707 0.91351 1.25552 1.01553 0.96018 1.02187 1.70009 1.31530 1.02322 1.55387 0.85078 0.79493 0.77237 0.77498 1.21000 1.20222 1.21451 1.21675 0.87181 0.93894 0.96128 0.86430 0.87587 0.85489 0.91309 0.90234 0.91775 0.88245 0.85533 0.86910 0.75297 0.90434 0.92057 0.91695 0.90092 0.87958 0.90654 0.98683 0.94123 0.97699 0.96406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 14.07 66.64 0.94 -1.30 16 2 C -0.15 -2.43 9.20 23.43 0.22 -2.21 16 3 C -0.11 -2.19 5.98 -18.71 -0.11 -2.30 16 4 C -0.12 -2.00 9.39 71.24 0.67 -1.33 16 5 C -0.14 -3.40 8.43 24.51 0.21 -3.20 16 6 C -0.11 -2.42 5.92 29.10 0.17 -2.24 16 7 C 0.51 15.93 7.03 87.66 0.62 16.55 16 8 O -0.57 -22.41 13.01 -3.01 -0.04 -22.45 16 9 N -0.71 -21.25 5.14 -417.56 -2.15 -23.39 16 10 C 0.17 5.98 0.81 4.80 0.00 5.98 16 11 C -0.14 -4.39 8.44 71.98 0.61 -3.79 16 12 C -0.13 -4.42 6.07 31.99 0.19 -4.22 16 13 C 0.15 7.41 5.87 86.86 0.51 7.92 16 14 N -0.62 -33.39 3.39 -691.97 -2.35 -35.74 16 15 C -0.24 -14.34 10.27 84.04 0.86 -13.48 16 16 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 17 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 18 N -0.94 -55.65 10.09 21.65 0.22 -55.43 16 19 Si 0.98 46.53 29.55 68.60 2.03 48.55 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 C 0.14 6.39 6.19 86.73 0.54 6.93 16 24 H 0.12 1.12 8.06 -2.91 -0.02 1.10 16 25 H 0.11 1.25 6.31 -2.91 -0.02 1.23 16 26 H 0.13 1.77 6.00 -2.91 -0.02 1.75 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.06 6.67 -2.38 -0.02 1.04 16 29 H 0.06 1.10 8.06 -2.38 -0.02 1.08 16 30 H 0.10 2.75 8.04 -2.91 -0.02 2.73 16 31 H 0.13 2.08 5.41 -2.39 -0.01 2.07 16 32 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.41 10.06 8.49 -92.70 -0.79 9.28 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 2.13 5.97 -2.39 -0.01 2.11 16 36 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 37 H 0.08 2.77 8.05 -2.39 -0.02 2.75 16 38 H 0.10 2.77 8.07 -2.39 -0.02 2.75 16 39 H 0.08 4.12 5.87 -2.39 -0.01 4.10 16 40 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 42 H 0.00 0.26 6.90 -2.39 -0.02 0.24 16 43 H 0.02 0.86 7.77 -2.39 -0.02 0.84 16 Total: -1.00 -71.86 342.11 3.81 -68.05 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.21 Total: 20.10 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.89 Total: 0.31 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -4.28 Total: -114.56 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.45 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -71.86 3.81 -68.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716846324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.807 kcal (2) G-P(sol) polarization free energy of solvation -71.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds