Wall clock time and date at job start Tue Mar 31 2020 00:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50709 * 119.99724 * 2 1 4 4 C 1.32995 * 120.00542 * 180.02562 * 2 1 3 5 5 C 1.47106 * 119.99716 * 352.64755 * 4 2 1 6 6 O 1.21613 * 119.99666 * 353.32311 * 5 4 2 7 7 N 1.34767 * 119.99949 * 173.32555 * 5 4 2 8 8 C 1.46504 * 120.00202 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.32285 * 34.99503 * 8 7 5 10 10 C 1.53021 * 109.32722 * 154.64182 * 8 7 5 11 11 C 1.53970 * 108.82751 * 175.50244 * 10 8 7 12 12 H 1.09000 * 113.00061 * 168.09096 * 11 10 8 13 13 C 1.55432 * 106.41240 * 293.82040 * 11 10 8 14 14 C 1.55169 * 100.35678 * 73.37667 * 13 11 10 15 15 H 1.08998 * 113.05373 * 162.98960 * 14 13 11 16 16 C 1.52992 * 109.17710 * 275.44316 * 8 7 5 17 17 N 1.47796 * 104.25365 * 40.55092 * 14 13 11 18 18 C 1.36931 * 125.85596 * 153.55007 * 17 14 13 19 19 H 1.08000 * 120.00456 * 353.65557 * 18 17 14 20 20 C 1.38820 * 119.99931 * 173.64473 * 18 17 14 21 21 N 1.31620 * 119.99656 * 7.25503 * 20 18 17 22 22 Si 1.86792 * 119.99982 * 187.24685 * 20 18 17 23 23 H 1.48503 * 109.47271 * 94.98665 * 22 20 18 24 24 H 1.48503 * 109.47244 * 214.98257 * 22 20 18 25 25 H 1.48501 * 109.47525 * 334.98370 * 22 20 18 26 26 C 1.47079 * 108.28297 * 333.53323 * 17 14 13 27 27 H 1.08996 * 109.46809 * 264.31364 * 1 2 3 28 28 H 1.08994 * 109.47419 * 24.31679 * 1 2 3 29 29 H 1.08996 * 109.46746 * 144.32056 * 1 2 3 30 30 H 1.09005 * 109.46775 * 270.00152 * 3 2 1 31 31 H 1.08999 * 109.47073 * 30.00263 * 3 2 1 32 32 H 1.08999 * 109.46823 * 150.00171 * 3 2 1 33 33 H 1.07994 * 120.00167 * 172.64957 * 4 2 1 34 34 H 0.97006 * 120.00238 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.58310 * 295.30402 * 10 8 7 36 36 H 1.09003 * 109.57880 * 55.56767 * 10 8 7 37 37 H 1.09007 * 111.23532 * 191.15520 * 13 11 10 38 38 H 1.08997 * 111.23710 * 315.59838 * 13 11 10 39 39 H 1.08999 * 109.53360 * 304.61696 * 16 8 7 40 40 H 1.09003 * 109.53310 * 64.84823 * 16 8 7 41 41 H 0.97005 * 119.99513 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.97897 * 241.74017 * 26 17 14 43 43 H 1.09013 * 110.00695 * 120.48374 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1721 -1.1517 -0.0005 5 6 1.4457 -2.4206 0.1620 6 8 0.2568 -2.4121 0.4177 7 7 2.0977 -3.5923 0.0274 8 6 1.3742 -4.8560 0.1886 9 1 0.3612 -4.7434 -0.1977 10 6 2.0954 -5.9558 -0.5936 11 6 1.3921 -7.2990 -0.3255 12 1 1.7143 -8.0909 -1.0016 13 6 1.6209 -7.6222 1.1776 14 6 0.6578 -6.5972 1.8331 15 1 0.4285 -6.8314 2.8726 16 6 1.3124 -5.2136 1.6749 17 7 -0.5423 -6.6225 0.9707 18 6 -1.8178 -6.3143 1.3621 19 1 -2.0315 -6.1209 2.4029 20 6 -2.8362 -6.2503 0.4209 21 7 -2.6092 -6.6235 -0.8207 22 14 -4.5287 -5.6348 0.9167 23 1 -4.6371 -4.1854 0.6120 24 1 -5.5673 -6.3787 0.1596 25 1 -4.7273 -5.8509 2.3724 26 6 -0.1313 -7.0350 -0.3799 27 1 -0.3633 -0.1018 1.0226 28 1 -0.3634 0.9364 -0.4231 29 1 -0.3633 -0.8348 -0.5994 30 1 2.4421 1.6199 -1.0277 31 1 1.6714 2.0648 0.5139 32 1 3.2129 1.1749 0.5138 33 1 3.2454 -1.1554 -0.1202 34 1 3.0460 -3.5990 -0.1769 35 1 2.0581 -5.7304 -1.6594 36 1 3.1342 -6.0140 -0.2687 37 1 1.3265 -8.6456 1.4106 38 1 2.6544 -7.4349 1.4688 39 1 2.3215 -5.2387 2.0860 40 1 0.7201 -4.4676 2.2049 41 1 -3.3210 -6.5791 -1.4782 42 1 -0.3462 -6.2398 -1.0937 43 1 -0.6570 -7.9455 -0.6679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716948976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:45 Heat of formation + Delta-G solvation = 4.910038 kcal Electronic energy + Delta-G solvation = -22911.137648 eV Core-core repulsion = 19764.139405 eV Total energy + Delta-G solvation = -3146.998243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00922 -38.74873 -35.49049 -34.23684 -32.73841 -30.62240 -29.85099 -28.52895 -27.77223 -27.09960 -25.24255 -23.06141 -22.16638 -20.32172 -19.42040 -19.00829 -18.04651 -16.90941 -16.62831 -15.64373 -14.82725 -14.49408 -14.38105 -14.13108 -13.81171 -13.48678 -13.46762 -12.95442 -12.65701 -12.34047 -12.26373 -11.94617 -11.74854 -11.69854 -11.59905 -11.47972 -11.42284 -11.19490 -10.68850 -10.60382 -10.42439 -9.91777 -9.76226 -9.66405 -9.59116 -9.28382 -9.10258 -8.96603 -8.46510 -8.34768 -6.71058 -5.60426 -2.90978 1.54951 3.50808 3.56616 3.57576 3.68730 3.70176 4.62078 4.84025 4.87530 5.25375 5.29427 5.30618 5.36769 5.46023 5.53749 5.63400 5.70490 5.70951 5.74217 5.94931 5.96715 6.01535 6.10465 6.14867 6.17490 6.20580 6.23933 6.30083 6.58307 6.62814 6.67448 6.70429 6.78790 6.96226 7.02693 7.07098 7.21274 7.64959 7.70870 7.92643 8.04597 8.36563 8.78405 9.33844 9.94590 10.61303 11.52191 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014535 B = 0.006558 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.904321 B = 4268.489703 C = 5662.406397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.041 4.041 3 C -0.124 4.124 4 C -0.232 4.232 5 C 0.534 3.466 6 O -0.523 6.523 7 N -0.727 5.727 8 C 0.147 3.853 9 H 0.114 0.886 10 C -0.111 4.111 11 C -0.119 4.119 12 H 0.081 0.919 13 C -0.127 4.127 14 C 0.157 3.843 15 H 0.064 0.936 16 C -0.134 4.134 17 N -0.595 5.595 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.921 5.921 22 Si 0.906 3.094 23 H -0.289 1.289 24 H -0.293 1.293 25 H -0.282 1.282 26 C 0.180 3.820 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.389 0.611 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.058 0.942 41 H 0.250 0.750 42 H 0.049 0.951 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.235 8.596 0.186 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.043 4.043 3 C -0.181 4.181 4 C -0.253 4.253 5 C 0.323 3.677 6 O -0.401 6.401 7 N -0.377 5.377 8 C 0.044 3.956 9 H 0.132 0.868 10 C -0.149 4.149 11 C -0.139 4.139 12 H 0.099 0.901 13 C -0.166 4.166 14 C 0.048 3.952 15 H 0.082 0.918 16 C -0.176 4.176 17 N -0.319 5.319 18 C -0.349 4.349 19 H 0.093 0.907 20 C -0.201 4.201 21 N -0.569 5.569 22 Si 0.737 3.263 23 H -0.216 1.216 24 H -0.220 1.220 25 H -0.208 1.208 26 C 0.056 3.944 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.221 0.779 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.118 8.608 0.262 15.692 hybrid contribution -0.248 0.401 0.073 0.477 sum 12.870 9.009 0.335 15.713 Atomic orbital electron populations 1.21136 0.90787 1.02277 1.03843 1.22520 0.96971 0.94270 0.90571 1.20975 0.99907 0.94643 1.02556 1.22452 0.99868 0.92597 1.10386 1.18526 0.87178 0.84180 0.77819 1.90858 1.14893 1.87319 1.47065 1.46140 1.12440 1.06427 1.72657 1.21159 0.98083 0.80558 0.95804 0.86774 1.21955 0.98107 0.95456 0.99428 1.22831 0.99660 0.95215 0.96162 0.90053 1.22967 0.98207 0.99414 0.95970 1.21524 0.87399 0.91520 0.94746 0.91814 1.22601 0.98715 1.00475 0.95782 1.44601 1.02195 1.79250 1.05890 1.19006 0.83198 1.39628 0.93068 0.90650 1.24733 0.98108 1.01585 0.95626 1.69959 1.31898 1.52825 1.02228 0.86180 0.84046 0.78706 0.77355 1.21622 1.22002 1.20771 1.21308 0.86441 0.99159 0.87535 0.90292 0.93048 0.89032 0.90737 0.91062 0.91366 0.86192 0.77881 0.92279 0.92910 0.91935 0.92262 0.94011 0.92287 0.93961 0.93319 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 8.46 36.01 0.30 -1.49 16 2 C -0.04 -0.52 6.11 -101.16 -0.62 -1.14 16 3 C -0.12 -1.06 10.01 36.01 0.36 -0.70 16 4 C -0.23 -3.08 9.62 -37.80 -0.36 -3.45 16 5 C 0.53 9.41 7.56 -12.67 -0.10 9.31 16 6 O -0.52 -11.69 12.97 5.27 0.07 -11.63 16 7 N -0.73 -11.61 5.06 -54.98 -0.28 -11.89 16 8 C 0.15 2.81 2.08 -67.92 -0.14 2.67 16 9 H 0.11 2.86 5.39 -51.93 -0.28 2.58 16 10 C -0.11 -1.83 4.95 -26.21 -0.13 -1.96 16 11 C -0.12 -2.18 4.33 -87.92 -0.38 -2.56 16 12 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 13 C -0.13 -2.22 6.18 -24.29 -0.15 -2.37 16 14 C 0.16 3.27 4.30 -65.61 -0.28 2.99 16 15 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 16 C -0.13 -2.62 5.26 -26.27 -0.14 -2.76 16 17 N -0.59 -15.23 2.43 -161.36 -0.39 -15.62 16 18 C -0.22 -6.34 10.28 -15.06 -0.15 -6.50 16 19 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 20 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 21 N -0.92 -27.84 10.41 55.49 0.58 -27.27 16 22 Si 0.91 23.38 29.56 -169.99 -5.02 18.36 16 23 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 25 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.18 4.37 4.10 -2.83 -0.01 4.36 16 27 H 0.08 1.22 8.02 -51.93 -0.42 0.81 16 28 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.09 1.62 6.18 -51.93 -0.32 1.30 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.39 4.74 8.58 -40.82 -0.35 4.39 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.72 7.98 -51.93 -0.41 0.31 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 39 H 0.04 0.70 8.00 -51.93 -0.42 0.28 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.05 1.33 6.02 -51.93 -0.31 1.01 16 43 H 0.04 1.08 7.57 -51.92 -0.39 0.68 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -33.06 333.29 -8.99 -42.05 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.07 Total: 4.79 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.90 Total: -3.82 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.09 Total: -54.78 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.07 Total: -11.63 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.06 -8.99 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716948976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.961 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds