Wall clock time and date at job start Mon Mar 30 2020 23:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47116 * 120.00052 * 2 1 4 4 C 1.50696 * 120.00106 * 5.49785 * 3 2 1 5 5 C 1.32872 * 120.00194 * 185.50459 * 3 2 1 6 6 C 1.50697 * 119.99847 * 6.24314 * 5 3 2 7 7 C 1.50697 * 109.47134 * 126.13273 * 6 5 3 8 8 O 1.21284 * 119.99933 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00214 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00021 * 179.97438 * 9 7 6 11 11 C 1.53778 * 113.61406 * 254.12868 * 10 9 7 12 12 C 1.54046 * 86.99072 * 270.83909 * 11 10 9 13 13 C 1.52995 * 113.62247 * 220.01952 * 12 11 10 14 14 N 1.46496 * 109.47296 * 272.49696 * 13 12 11 15 15 C 1.36941 * 119.99915 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00038 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99913 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99977 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99963 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47226 * 60.00171 * 19 17 15 21 21 H 1.48497 * 109.47080 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47392 * 300.00258 * 19 17 15 23 23 C 1.53780 * 87.07843 * 334.57083 * 12 11 10 24 24 H 1.07996 * 119.99820 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99943 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99943 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.47170 * 270.00259 * 4 3 2 28 28 H 1.09000 * 109.47068 * 29.99918 * 4 3 2 29 29 H 1.09000 * 109.47256 * 150.00245 * 4 3 2 30 30 H 1.07999 * 120.00365 * 186.25200 * 5 3 2 31 31 H 1.09000 * 109.47211 * 246.12913 * 6 5 3 32 32 H 1.08995 * 109.47306 * 6.12982 * 6 5 3 33 33 H 0.97007 * 120.00346 * 359.97438 * 9 7 6 34 34 H 1.08996 * 112.85179 * 25.33372 * 10 9 7 35 35 H 1.09001 * 113.61460 * 25.43844 * 11 10 9 36 36 H 1.09003 * 113.61165 * 156.33638 * 11 10 9 37 37 H 1.09003 * 113.68453 * 89.12211 * 12 11 10 38 38 H 1.08997 * 109.46809 * 32.49771 * 13 12 11 39 39 H 1.09000 * 109.47009 * 152.49276 * 13 12 11 40 40 H 0.96994 * 120.00168 * 359.97438 * 14 13 12 41 41 H 0.96993 * 120.00074 * 179.97438 * 18 17 15 42 42 H 1.08999 * 113.61394 * 270.88228 * 23 12 11 43 43 H 1.09001 * 113.62027 * 139.97486 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3161 2.5761 0.1250 5 6 3.3884 1.2767 -0.1104 6 6 4.1249 -0.0108 -0.3765 7 6 5.0035 0.1546 -1.5896 8 8 5.0288 1.2136 -2.1802 9 7 5.7605 -0.8746 -2.0188 10 6 6.6142 -0.7140 -3.1985 11 6 6.0765 -1.4279 -4.4498 12 6 6.8644 -2.6664 -3.9824 13 6 7.5486 -3.4238 -5.1221 14 7 6.6170 -4.4040 -5.6856 15 6 7.0106 -5.2039 -6.7250 16 1 8.0080 -5.1125 -7.1291 17 6 6.1281 -6.1331 -7.2586 18 7 4.9127 -6.2448 -6.7657 19 14 6.6652 -7.2247 -8.6760 20 1 7.8343 -8.0393 -8.2579 21 1 5.5471 -8.1232 -9.0600 22 1 7.0412 -6.3790 -9.8373 23 6 7.7977 -1.6951 -3.2406 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8687 -0.9353 -0.0004 27 1 1.0503 2.9393 -0.8678 28 1 0.4093 2.4195 0.7093 29 1 1.9473 3.3115 0.6240 30 1 3.9369 2.2016 -0.0093 31 1 4.7411 -0.2620 0.4868 32 1 3.4060 -0.8104 -0.5548 33 1 5.7401 -1.7218 -1.5466 34 1 6.9001 0.3227 -3.3761 35 1 4.9956 -1.5678 -4.4421 36 1 6.4429 -1.0048 -5.3852 37 1 6.2986 -3.3206 -3.3190 38 1 7.8482 -2.7194 -5.8981 39 1 8.4297 -3.9385 -4.7388 40 1 5.7214 -4.4864 -5.3224 41 1 4.2959 -6.8938 -7.1388 42 1 8.6338 -1.3449 -3.8459 43 1 8.1055 -2.0505 -2.2571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717388276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:46 Heat of formation + Delta-G solvation = 20.494842 kcal Electronic energy + Delta-G solvation = -20693.108774 eV Core-core repulsion = 17546.786339 eV Total energy + Delta-G solvation = -3146.322435 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.22787 -38.50160 -37.01298 -34.51659 -33.16982 -32.13331 -30.86261 -30.07144 -26.97393 -25.63689 -25.48445 -23.33661 -22.15384 -21.42023 -20.82590 -19.06811 -17.82377 -17.26802 -16.97218 -16.04307 -16.02946 -15.18487 -14.79348 -14.61907 -14.36456 -13.92458 -13.76466 -13.42101 -13.33834 -12.90047 -12.75153 -12.61160 -12.34814 -12.27396 -12.10854 -11.77680 -11.59528 -11.02175 -10.88736 -10.80555 -10.67117 -10.47205 -10.35012 -10.09247 -9.91139 -9.81392 -9.59364 -8.98439 -8.82341 -8.44504 -6.88917 -5.74572 -3.02741 1.11763 2.58456 2.74772 3.21636 3.45135 3.49262 3.50463 4.41644 4.59308 4.62090 4.65638 4.71391 4.83492 4.89135 5.07236 5.13958 5.17542 5.21225 5.29066 5.40780 5.43606 5.54813 5.59526 5.75241 5.78207 5.88036 5.95220 6.03201 6.12108 6.14738 6.21727 6.26579 6.33731 6.44254 6.48893 6.65855 6.71018 6.79987 6.95500 7.47308 7.71044 8.19310 8.44816 9.55566 10.14917 10.49356 11.48424 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.002888 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.325381 B = 9692.540712 C =10715.997985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.120 4.120 7 C 0.519 3.481 8 O -0.539 6.539 9 N -0.711 5.711 10 C 0.115 3.885 11 C -0.139 4.139 12 C -0.113 4.113 13 C 0.162 3.838 14 N -0.732 5.732 15 C -0.239 4.239 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.935 5.935 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.138 4.138 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.118 0.882 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.401 0.599 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.020 0.980 39 H 0.018 0.982 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.094 0.906 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 14.579 17.514 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.146 4.146 3 C -0.109 4.109 4 C -0.171 4.171 5 C -0.138 4.138 6 C -0.159 4.159 7 C 0.305 3.695 8 O -0.416 6.416 9 N -0.362 5.362 10 C 0.010 3.990 11 C -0.177 4.177 12 C -0.132 4.132 13 C 0.035 3.965 14 N -0.376 5.376 15 C -0.370 4.370 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.584 5.584 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.176 4.176 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.136 0.864 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.236 0.764 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.335 15.274 16.951 23.060 hybrid contribution -0.050 -1.270 -0.554 1.387 sum -3.385 14.004 16.397 21.827 Atomic orbital electron populations 1.24448 0.95765 1.02113 0.99478 1.21986 0.95438 0.96325 1.00838 1.20577 0.93868 0.94397 1.02031 1.20784 0.99988 0.94141 1.02221 1.22758 0.94033 0.97686 0.99312 1.20844 0.99210 0.98897 0.96974 1.20521 0.79833 0.83721 0.85421 1.90698 1.65630 1.27235 1.58040 1.45723 1.44749 1.15289 1.30428 1.21930 0.91333 1.00001 0.85709 1.23452 1.00757 0.96304 0.97234 1.22800 0.97038 0.95255 0.98067 1.20637 0.92737 0.91037 0.92137 1.42341 1.13710 1.41616 1.39916 1.19206 0.97573 1.12036 1.08214 0.91295 1.24741 0.96105 1.00144 1.00123 1.69650 1.05698 1.38720 1.44296 0.86260 0.77198 0.80355 0.82344 1.21298 1.21699 1.21290 1.23303 0.96792 0.96591 1.00930 0.88035 0.88121 0.86424 0.91210 0.91803 0.91658 0.86253 0.87943 0.87819 0.76424 0.88476 0.91372 0.89192 0.89449 0.96227 0.96427 0.78346 0.93512 0.88757 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 14.07 28.88 0.41 -1.04 16 2 C -0.13 -1.14 9.20 -37.83 -0.35 -1.49 16 3 C -0.11 -1.03 5.98 -102.87 -0.61 -1.64 16 4 C -0.11 -0.90 9.38 36.00 0.34 -0.57 16 5 C -0.12 -1.18 8.43 -36.16 -0.30 -1.49 16 6 C -0.12 -1.06 5.92 -29.04 -0.17 -1.23 16 7 C 0.52 6.40 7.82 -10.99 -0.09 6.31 16 8 O -0.54 -8.85 15.65 5.55 0.09 -8.76 16 9 N -0.71 -7.98 5.26 -53.01 -0.28 -8.26 16 10 C 0.12 1.48 4.30 -67.11 -0.29 1.19 16 11 C -0.14 -2.11 7.45 -25.78 -0.19 -2.31 16 12 C -0.11 -1.75 3.64 -89.67 -0.33 -2.08 16 13 C 0.16 3.24 6.10 -4.05 -0.02 3.22 16 14 N -0.73 -18.75 5.60 -59.91 -0.34 -19.08 16 15 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 19 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C -0.14 -1.66 7.38 -25.92 -0.19 -1.85 16 24 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 25 H 0.10 0.72 6.31 -52.49 -0.33 0.39 16 26 H 0.12 0.93 6.00 -52.49 -0.31 0.61 16 27 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 28 H 0.06 0.43 6.67 -51.93 -0.35 0.08 16 29 H 0.06 0.46 8.06 -51.93 -0.42 0.04 16 30 H 0.12 1.21 8.04 -52.49 -0.42 0.78 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.82 5.41 -51.93 -0.28 0.53 16 33 H 0.40 3.56 8.70 -40.82 -0.36 3.21 16 34 H 0.10 1.33 7.50 -51.93 -0.39 0.95 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.38 10.30 7.67 -40.82 -0.31 9.99 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 42 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -33.64 356.88 -8.42 -42.05 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.91 Total: 9.35 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -2.05 Total: -10.45 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.11 Total: -55.19 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.64 -8.42 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717388276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.547 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds