Wall clock time and date at job start Mon Mar 30 2020 23:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47116 * 120.00052 * 2 1 4 4 C 1.50696 * 120.00106 * 5.49785 * 3 2 1 5 5 C 1.32872 * 120.00194 * 185.50459 * 3 2 1 6 6 C 1.50697 * 119.99847 * 6.24314 * 5 3 2 7 7 C 1.50697 * 109.47134 * 126.13273 * 6 5 3 8 8 O 1.21284 * 119.99933 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00214 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00021 * 179.97438 * 9 7 6 11 11 C 1.53778 * 113.61406 * 254.12868 * 10 9 7 12 12 C 1.54046 * 86.99072 * 270.83909 * 11 10 9 13 13 C 1.52995 * 113.62247 * 220.01952 * 12 11 10 14 14 N 1.46496 * 109.47296 * 272.49696 * 13 12 11 15 15 C 1.36941 * 119.99915 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00038 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99913 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99977 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99963 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47226 * 60.00171 * 19 17 15 21 21 H 1.48497 * 109.47080 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47392 * 300.00258 * 19 17 15 23 23 C 1.53780 * 87.07843 * 334.57083 * 12 11 10 24 24 H 1.07996 * 119.99820 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99943 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99943 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.47170 * 270.00259 * 4 3 2 28 28 H 1.09000 * 109.47068 * 29.99918 * 4 3 2 29 29 H 1.09000 * 109.47256 * 150.00245 * 4 3 2 30 30 H 1.07999 * 120.00365 * 186.25200 * 5 3 2 31 31 H 1.09000 * 109.47211 * 246.12913 * 6 5 3 32 32 H 1.08995 * 109.47306 * 6.12982 * 6 5 3 33 33 H 0.97007 * 120.00346 * 359.97438 * 9 7 6 34 34 H 1.08996 * 112.85179 * 25.33372 * 10 9 7 35 35 H 1.09001 * 113.61460 * 25.43844 * 11 10 9 36 36 H 1.09003 * 113.61165 * 156.33638 * 11 10 9 37 37 H 1.09003 * 113.68453 * 89.12211 * 12 11 10 38 38 H 1.08997 * 109.46809 * 32.49771 * 13 12 11 39 39 H 1.09000 * 109.47009 * 152.49276 * 13 12 11 40 40 H 0.96994 * 120.00168 * 359.97438 * 14 13 12 41 41 H 0.96993 * 120.00074 * 179.97438 * 18 17 15 42 42 H 1.08999 * 113.61394 * 270.88228 * 23 12 11 43 43 H 1.09001 * 113.62027 * 139.97486 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3161 2.5761 0.1250 5 6 3.3884 1.2767 -0.1104 6 6 4.1249 -0.0108 -0.3765 7 6 5.0035 0.1546 -1.5896 8 8 5.0288 1.2136 -2.1802 9 7 5.7605 -0.8746 -2.0188 10 6 6.6142 -0.7140 -3.1985 11 6 6.0765 -1.4279 -4.4498 12 6 6.8644 -2.6664 -3.9824 13 6 7.5486 -3.4238 -5.1221 14 7 6.6170 -4.4040 -5.6856 15 6 7.0106 -5.2039 -6.7250 16 1 8.0080 -5.1125 -7.1291 17 6 6.1281 -6.1331 -7.2586 18 7 4.9127 -6.2448 -6.7657 19 14 6.6652 -7.2247 -8.6760 20 1 7.8343 -8.0393 -8.2579 21 1 5.5471 -8.1232 -9.0600 22 1 7.0412 -6.3790 -9.8373 23 6 7.7977 -1.6951 -3.2406 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8687 -0.9353 -0.0004 27 1 1.0503 2.9393 -0.8678 28 1 0.4093 2.4195 0.7093 29 1 1.9473 3.3115 0.6240 30 1 3.9369 2.2016 -0.0093 31 1 4.7411 -0.2620 0.4868 32 1 3.4060 -0.8104 -0.5548 33 1 5.7401 -1.7218 -1.5466 34 1 6.9001 0.3227 -3.3761 35 1 4.9956 -1.5678 -4.4421 36 1 6.4429 -1.0048 -5.3852 37 1 6.2986 -3.3206 -3.3190 38 1 7.8482 -2.7194 -5.8981 39 1 8.4297 -3.9385 -4.7388 40 1 5.7214 -4.4864 -5.3224 41 1 4.2959 -6.8938 -7.1388 42 1 8.6338 -1.3449 -3.8459 43 1 8.1055 -2.0505 -2.2571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717388276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:45 Heat of formation + Delta-G solvation = -0.995993 kcal Electronic energy + Delta-G solvation = -20694.040686 eV Core-core repulsion = 17546.786339 eV Total energy + Delta-G solvation = -3147.254348 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27667 -39.59872 -37.76142 -36.32898 -34.43142 -33.05537 -32.56794 -30.79976 -28.54222 -26.63018 -26.55059 -25.09935 -23.07849 -22.71187 -21.75697 -20.30234 -19.06499 -18.50942 -18.11847 -17.05665 -16.82840 -16.70037 -15.99158 -15.75234 -15.70288 -15.27824 -15.04912 -14.71297 -14.38972 -14.24005 -13.73620 -13.50221 -13.39015 -13.23521 -13.10724 -12.99241 -12.84607 -12.65043 -12.43952 -12.22940 -11.92577 -11.75131 -11.53471 -11.35267 -11.33159 -11.14235 -10.92449 -10.84332 -10.01847 -9.12714 -8.98073 -7.95134 -5.23498 0.43777 1.46651 1.49897 1.55998 1.63155 2.01866 2.36322 2.56159 3.37577 3.59715 3.60560 3.73831 3.87018 3.94542 3.95306 4.00621 4.22578 4.33569 4.44872 4.57008 4.59144 4.67678 4.75039 4.79923 4.80194 4.84743 4.92277 4.92663 4.94299 4.99060 5.14976 5.15774 5.27957 5.38019 5.49035 5.49173 5.58045 5.69704 5.82172 6.04028 6.27697 6.58022 7.27349 7.33507 8.11561 8.34000 9.28346 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.002888 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.325381 B = 9692.540712 C =10715.997985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.148 4.148 3 C -0.112 4.112 4 C -0.117 4.117 5 C -0.138 4.138 6 C -0.111 4.111 7 C 0.515 3.485 8 O -0.585 6.585 9 N -0.702 5.702 10 C 0.125 3.875 11 C -0.145 4.145 12 C -0.110 4.110 13 C 0.159 3.841 14 N -0.745 5.745 15 C -0.247 4.247 16 H 0.075 0.925 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.974 3.026 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.279 1.279 23 C -0.115 4.115 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.126 0.874 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.415 0.585 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.018 0.982 39 H 0.023 0.977 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.104 0.896 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 14.355 18.575 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.166 4.166 3 C -0.113 4.113 4 C -0.174 4.174 5 C -0.157 4.157 6 C -0.150 4.150 7 C 0.304 3.696 8 O -0.465 6.465 9 N -0.354 5.354 10 C 0.019 3.981 11 C -0.184 4.184 12 C -0.129 4.129 13 C 0.033 3.967 14 N -0.388 5.388 15 C -0.379 4.379 16 H 0.092 0.908 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.803 3.197 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.205 1.205 23 C -0.153 4.153 24 H 0.131 0.869 25 H 0.125 0.875 26 H 0.144 0.856 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.252 0.748 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.123 0.877 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.615 15.048 18.040 23.638 hybrid contribution -0.287 -1.149 -0.880 1.476 sum -2.902 13.899 17.160 22.273 Atomic orbital electron populations 1.24666 0.95645 1.03020 0.97919 1.22142 0.95948 0.96436 1.02036 1.20831 0.93972 0.95266 1.01186 1.20835 1.00557 0.93754 1.02247 1.22809 0.94380 0.97931 1.00544 1.20855 0.99080 0.98803 0.96242 1.21161 0.79587 0.83005 0.85870 1.90679 1.67123 1.29062 1.59655 1.45671 1.44109 1.15844 1.29751 1.21734 0.91571 0.99608 0.85147 1.23466 0.99566 0.96960 0.98372 1.22726 0.98032 0.95069 0.97034 1.20832 0.92317 0.90205 0.93357 1.42577 1.14132 1.42431 1.39643 1.19634 0.97722 1.11999 1.08565 0.90752 1.25584 0.96312 1.02016 1.03041 1.69809 1.06800 1.39614 1.45881 0.85203 0.76785 0.78446 0.79292 1.20206 1.22097 1.20534 1.23207 0.96091 0.94253 1.01770 0.86940 0.87499 0.85596 0.91661 0.90565 0.91089 0.87134 0.84973 0.86586 0.74773 0.89157 0.93249 0.89985 0.89435 0.96376 0.95944 0.79545 0.94012 0.87738 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 14.07 66.64 0.94 -1.59 16 2 C -0.15 -2.43 9.20 23.43 0.22 -2.21 16 3 C -0.11 -2.03 5.98 -18.71 -0.11 -2.14 16 4 C -0.12 -1.77 9.38 71.23 0.67 -1.10 16 5 C -0.14 -2.64 8.43 24.51 0.21 -2.44 16 6 C -0.11 -1.79 5.92 29.10 0.17 -1.61 16 7 C 0.52 12.22 7.82 87.66 0.69 12.91 16 8 O -0.59 -19.26 15.65 -3.04 -0.05 -19.30 16 9 N -0.70 -14.62 5.26 -440.03 -2.32 -16.94 16 10 C 0.13 3.05 4.30 45.52 0.20 3.25 16 11 C -0.14 -4.39 7.45 31.21 0.23 -4.15 16 12 C -0.11 -3.28 3.64 -10.18 -0.04 -3.32 16 13 C 0.16 6.25 6.10 86.38 0.53 6.78 16 14 N -0.75 -38.30 5.60 -343.47 -1.92 -40.23 16 15 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 16 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 17 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 18 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 19 Si 0.97 46.50 29.55 68.60 2.03 48.53 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 C -0.11 -2.48 7.38 31.12 0.23 -2.25 16 24 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 25 H 0.11 1.36 6.31 -2.91 -0.02 1.34 16 26 H 0.13 1.77 6.00 -2.91 -0.02 1.75 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.08 0.92 6.67 -2.39 -0.02 0.91 16 29 H 0.07 0.96 8.06 -2.39 -0.02 0.94 16 30 H 0.11 2.25 8.04 -2.91 -0.02 2.23 16 31 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.12 1.60 5.41 -2.39 -0.01 1.59 16 33 H 0.42 6.36 8.70 -92.70 -0.81 5.55 16 34 H 0.09 2.40 7.50 -2.39 -0.02 2.39 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 2.59 7.90 -2.39 -0.02 2.57 16 37 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.02 0.73 7.85 -2.39 -0.02 0.71 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.37 20.36 7.67 -92.71 -0.71 19.65 16 41 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -72.61 356.88 2.74 -69.87 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: -0.51 Total: 32.86 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 5.23 Total: -15.10 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -3.96 Total: -116.86 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -72.61 2.74 -69.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717388276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.873 kcal (2) G-P(sol) polarization free energy of solvation -72.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds