Wall clock time and date at job start Tue Mar 31 2020 00:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99888 * 2 1 4 4 C 1.52997 * 109.47233 * 124.99867 * 3 2 1 5 5 C 1.50694 * 109.47116 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99914 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00155 * 179.97438 * 5 4 3 8 8 C 1.46502 * 120.00068 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.32368 * 35.35788 * 8 7 5 10 10 C 1.53033 * 109.32451 * 155.00337 * 8 7 5 11 11 C 1.53970 * 108.83057 * 175.50158 * 10 8 7 12 12 H 1.08997 * 112.99427 * 169.00941 * 11 10 8 13 13 C 1.55429 * 106.41057 * 293.82367 * 11 10 8 14 14 C 1.55172 * 100.35775 * 74.23929 * 13 11 10 15 15 H 1.08999 * 112.48739 * 162.66397 * 14 13 11 16 16 C 1.53880 * 107.25893 * 286.72181 * 14 13 11 17 17 N 1.47791 * 104.25035 * 40.54316 * 14 13 11 18 18 C 1.36945 * 125.85162 * 153.54392 * 17 14 13 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 14 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 14 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.47078 * 108.29372 * 333.80724 * 17 14 13 27 27 H 1.08000 * 119.99923 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00106 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00106 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47179 * 4.99474 * 3 2 1 31 31 H 1.09003 * 109.46704 * 244.99986 * 3 2 1 32 32 H 1.09001 * 109.47359 * 59.99717 * 4 3 2 33 33 H 1.09006 * 109.46976 * 300.00024 * 4 3 2 34 34 H 0.96996 * 119.99734 * 0.02562 * 7 5 4 35 35 H 1.08995 * 109.57538 * 55.69307 * 10 8 7 36 36 H 1.08995 * 109.68102 * 295.36883 * 10 8 7 37 37 H 1.08999 * 111.23841 * 316.45396 * 13 11 10 38 38 H 1.09006 * 111.23262 * 192.01045 * 13 11 10 39 39 H 1.08998 * 109.53309 * 185.71312 * 16 14 13 40 40 H 1.08997 * 109.53676 * 305.94165 * 16 14 13 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.97515 * 120.19260 * 26 17 14 43 43 H 1.09001 * 109.97644 * 241.47965 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7880 2.6385 1.1819 6 8 3.5695 3.4649 0.3215 7 7 4.7043 2.8877 2.1384 8 6 5.4367 4.1565 2.1384 9 1 4.7782 4.9531 1.7921 10 6 5.9065 4.4701 3.5607 11 6 6.7698 5.7446 3.5293 12 1 6.9833 6.1388 4.5228 13 6 8.0505 5.3877 2.7242 14 6 7.4748 5.3569 1.2835 15 1 8.2525 5.4197 0.5224 16 6 6.6323 4.0755 1.1558 17 7 6.5463 6.5058 1.2381 18 6 6.1892 7.2045 0.1158 19 1 6.5974 6.9281 -0.8451 20 6 5.3025 8.2680 0.2133 21 7 4.8054 8.6053 1.3845 22 14 4.8159 9.2217 -1.3175 23 1 5.7600 10.3501 -1.5187 24 1 4.8623 8.3210 -2.4974 25 1 3.4385 9.7519 -1.1534 26 6 6.0766 6.7741 2.6058 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 3.7400 0.5066 1.0921 33 1 2.4772 1.2357 2.1130 34 1 4.8793 2.2267 2.8263 35 1 6.4978 3.6376 3.9419 36 1 5.0426 4.6300 4.2057 37 1 8.4404 4.4121 3.0146 38 1 8.8111 6.1615 2.8289 39 1 6.2922 3.9641 0.1263 40 1 7.2362 3.2127 1.4367 41 1 4.1861 9.3487 1.4526 42 1 6.3505 7.7867 2.9017 43 1 4.9950 6.6498 2.6591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724497460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:58 Heat of formation + Delta-G solvation = 1.393604 kcal Electronic energy + Delta-G solvation = -22567.007402 eV Core-core repulsion = 19419.856675 eV Total energy + Delta-G solvation = -3147.150727 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.95120 -38.66181 -35.46572 -34.39033 -32.76610 -30.96713 -30.62705 -29.32944 -28.13782 -25.27540 -24.44678 -23.08968 -21.47840 -19.97768 -19.86407 -19.36181 -18.54064 -16.98126 -16.59596 -15.91104 -15.58555 -14.83964 -14.53017 -14.39383 -13.87414 -13.54212 -13.35241 -13.00086 -12.67037 -12.51511 -12.12870 -11.92005 -11.78598 -11.70540 -11.53298 -11.20164 -11.10490 -11.06406 -10.69945 -10.62029 -10.45106 -9.93078 -9.83946 -9.69597 -9.63149 -9.53359 -9.34307 -9.18332 -8.50574 -8.47084 -6.73028 -5.59889 -2.91893 2.13797 3.04153 3.49241 3.54750 3.56065 3.57331 4.60762 4.75835 4.87693 5.07983 5.20610 5.23518 5.26964 5.30768 5.46104 5.57095 5.64867 5.66767 5.73765 5.88829 5.92352 5.93370 6.08894 6.10925 6.14535 6.16532 6.19311 6.26261 6.50101 6.60115 6.65650 6.66150 6.74306 6.91479 6.94446 7.02866 7.13484 7.66278 7.67177 7.90557 7.93664 8.35604 8.67383 9.33277 9.93659 10.59646 11.52260 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.005514 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.087247 B = 5077.206971 C = 6392.446672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.082 4.082 4 C -0.134 4.134 5 C 0.502 3.498 6 O -0.525 6.525 7 N -0.729 5.729 8 C 0.142 3.858 9 H 0.110 0.890 10 C -0.108 4.108 11 C -0.119 4.119 12 H 0.080 0.920 13 C -0.128 4.128 14 C 0.156 3.844 15 H 0.063 0.937 16 C -0.131 4.131 17 N -0.595 5.595 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.924 5.924 22 Si 0.909 3.091 23 H -0.291 1.291 24 H -0.282 1.282 25 H -0.292 1.292 26 C 0.182 3.818 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.390 0.610 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.038 0.962 41 H 0.250 0.750 42 H 0.044 0.956 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -16.635 4.967 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.119 4.119 4 C -0.174 4.174 5 C 0.287 3.713 6 O -0.400 6.400 7 N -0.380 5.380 8 C 0.039 3.961 9 H 0.128 0.872 10 C -0.146 4.146 11 C -0.139 4.139 12 H 0.098 0.902 13 C -0.167 4.167 14 C 0.048 3.952 15 H 0.081 0.919 16 C -0.172 4.172 17 N -0.320 5.320 18 C -0.348 4.348 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.572 5.572 22 Si 0.740 3.260 23 H -0.218 1.218 24 H -0.207 1.207 25 H -0.218 1.218 26 C 0.057 3.943 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.222 0.778 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.107 -15.813 4.261 16.415 hybrid contribution -0.259 0.063 -0.402 0.482 sum -1.365 -15.750 3.859 16.273 Atomic orbital electron populations 1.23877 0.96028 1.01806 1.01669 1.23004 0.96073 0.98402 0.99475 1.20517 0.97956 0.95190 0.98256 1.21607 0.98912 0.96086 1.00823 1.20639 0.79987 0.88844 0.81833 1.90804 1.65107 1.47579 1.36486 1.46215 1.40941 1.20602 1.30220 1.21455 0.94577 0.85321 0.94750 0.87227 1.21882 0.99347 0.97810 0.95559 1.22830 0.95674 0.96206 0.99158 0.90150 1.22983 0.96858 0.99809 0.97009 1.21509 0.91581 0.87675 0.94461 0.91888 1.22889 0.96777 0.98362 0.99160 1.44609 1.50439 1.32987 1.03954 1.19019 1.21310 1.08376 0.86104 0.90628 1.24723 0.99668 0.99064 0.96813 1.69943 1.35171 1.30469 1.21609 0.86152 0.77554 0.79860 0.82462 1.21826 1.20726 1.21796 1.21272 0.96522 0.94256 0.82239 0.88678 0.88464 0.87493 0.90606 0.90130 0.89278 0.89276 0.77769 0.92835 0.92156 0.92280 0.91878 0.92063 0.94310 0.93957 0.93809 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 14.32 29.01 0.42 -1.40 16 2 C -0.15 -1.47 9.52 -36.03 -0.34 -1.81 16 3 C -0.08 -0.98 4.95 -27.88 -0.14 -1.12 16 4 C -0.13 -1.50 5.68 -27.89 -0.16 -1.66 16 5 C 0.50 8.18 7.78 -10.99 -0.09 8.10 16 6 O -0.52 -11.56 15.65 5.55 0.09 -11.48 16 7 N -0.73 -10.86 5.11 -52.78 -0.27 -11.13 16 8 C 0.14 2.64 2.08 -66.87 -0.14 2.50 16 9 H 0.11 2.69 5.51 -51.93 -0.29 2.41 16 10 C -0.11 -1.72 5.01 -26.21 -0.13 -1.85 16 11 C -0.12 -2.15 4.26 -87.93 -0.37 -2.53 16 12 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 13 C -0.13 -2.22 6.18 -24.29 -0.15 -2.37 16 14 C 0.16 3.23 4.25 -65.61 -0.28 2.95 16 15 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.13 -2.49 5.45 -25.23 -0.14 -2.63 16 17 N -0.60 -15.19 2.46 -161.38 -0.40 -15.58 16 18 C -0.22 -6.31 10.29 -15.06 -0.16 -6.46 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -27.87 10.35 55.49 0.57 -27.30 16 22 Si 0.91 23.30 29.55 -169.99 -5.02 18.28 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 26 C 0.18 4.39 4.11 -2.83 -0.01 4.38 16 27 H 0.09 0.72 8.06 -52.49 -0.42 0.30 16 28 H 0.10 0.92 7.84 -52.49 -0.41 0.51 16 29 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.08 1.03 7.75 -51.93 -0.40 0.63 16 31 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.39 4.25 8.60 -40.82 -0.35 3.90 16 35 H 0.05 0.70 7.97 -51.93 -0.41 0.29 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.86 7.76 -51.93 -0.40 0.46 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.04 0.63 8.02 -51.93 -0.42 0.21 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 42 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 43 H 0.05 1.24 6.23 -51.93 -0.32 0.91 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -33.38 338.26 -8.88 -42.26 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.16 Total: 4.06 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.78 Total: -4.20 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.09 Total: -54.01 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.38 -8.88 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724497460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.650 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds