Wall clock time and date at job start Tue Mar 31 2020 00:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99888 * 2 1 4 4 C 1.52997 * 109.47233 * 124.99867 * 3 2 1 5 5 C 1.50694 * 109.47116 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99914 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00155 * 179.97438 * 5 4 3 8 8 C 1.46502 * 120.00068 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.32368 * 35.35788 * 8 7 5 10 10 C 1.53033 * 109.32451 * 155.00337 * 8 7 5 11 11 C 1.53970 * 108.83057 * 175.50158 * 10 8 7 12 12 H 1.08997 * 112.99427 * 169.00941 * 11 10 8 13 13 C 1.55429 * 106.41057 * 293.82367 * 11 10 8 14 14 C 1.55172 * 100.35775 * 74.23929 * 13 11 10 15 15 H 1.08999 * 112.48739 * 162.66397 * 14 13 11 16 16 C 1.53880 * 107.25893 * 286.72181 * 14 13 11 17 17 N 1.47791 * 104.25035 * 40.54316 * 14 13 11 18 18 C 1.36945 * 125.85162 * 153.54392 * 17 14 13 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 14 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 14 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.47078 * 108.29372 * 333.80724 * 17 14 13 27 27 H 1.08000 * 119.99923 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00106 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00106 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47179 * 4.99474 * 3 2 1 31 31 H 1.09003 * 109.46704 * 244.99986 * 3 2 1 32 32 H 1.09001 * 109.47359 * 59.99717 * 4 3 2 33 33 H 1.09006 * 109.46976 * 300.00024 * 4 3 2 34 34 H 0.96996 * 119.99734 * 0.02562 * 7 5 4 35 35 H 1.08995 * 109.57538 * 55.69307 * 10 8 7 36 36 H 1.08995 * 109.68102 * 295.36883 * 10 8 7 37 37 H 1.08999 * 111.23841 * 316.45396 * 13 11 10 38 38 H 1.09006 * 111.23262 * 192.01045 * 13 11 10 39 39 H 1.08998 * 109.53309 * 185.71312 * 16 14 13 40 40 H 1.08997 * 109.53676 * 305.94165 * 16 14 13 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.97515 * 120.19260 * 26 17 14 43 43 H 1.09001 * 109.97644 * 241.47965 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7880 2.6385 1.1819 6 8 3.5695 3.4649 0.3215 7 7 4.7043 2.8877 2.1384 8 6 5.4367 4.1565 2.1384 9 1 4.7782 4.9531 1.7921 10 6 5.9065 4.4701 3.5607 11 6 6.7698 5.7446 3.5293 12 1 6.9833 6.1388 4.5228 13 6 8.0505 5.3877 2.7242 14 6 7.4748 5.3569 1.2835 15 1 8.2525 5.4197 0.5224 16 6 6.6323 4.0755 1.1558 17 7 6.5463 6.5058 1.2381 18 6 6.1892 7.2045 0.1158 19 1 6.5974 6.9281 -0.8451 20 6 5.3025 8.2680 0.2133 21 7 4.8054 8.6053 1.3845 22 14 4.8159 9.2217 -1.3175 23 1 5.7600 10.3501 -1.5187 24 1 4.8623 8.3210 -2.4974 25 1 3.4385 9.7519 -1.1534 26 6 6.0766 6.7741 2.6058 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 3.7400 0.5066 1.0921 33 1 2.4772 1.2357 2.1130 34 1 4.8793 2.2267 2.8263 35 1 6.4978 3.6376 3.9419 36 1 5.0426 4.6300 4.2057 37 1 8.4404 4.4121 3.0146 38 1 8.8111 6.1615 2.8289 39 1 6.2922 3.9641 0.1263 40 1 7.2362 3.2127 1.4367 41 1 4.1861 9.3487 1.4526 42 1 6.3505 7.7867 2.9017 43 1 4.9950 6.6498 2.6591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724497460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:57 Heat of formation + Delta-G solvation = -21.092503 kcal Electronic energy + Delta-G solvation = -22567.982473 eV Core-core repulsion = 19419.856675 eV Total energy + Delta-G solvation = -3148.125798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43367 -40.12762 -36.43591 -35.92636 -34.67822 -32.40903 -32.00456 -30.95544 -29.64246 -27.21750 -25.50072 -24.93493 -22.83283 -21.41574 -21.08965 -20.65555 -20.05283 -18.92885 -17.88575 -17.37292 -16.72528 -16.53384 -16.09616 -15.76090 -15.41749 -15.16787 -14.60720 -14.38408 -14.10193 -13.76533 -13.58842 -13.43909 -13.31113 -13.22909 -13.04873 -12.96541 -12.65349 -12.51479 -12.13170 -12.00148 -11.91973 -11.88322 -11.63473 -11.39238 -11.15069 -11.00926 -10.71274 -10.67586 -10.21032 -9.90288 -8.82972 -7.83990 -5.15472 1.37569 1.39533 1.41225 1.48631 1.76334 2.34276 2.48153 3.34455 3.65297 3.77294 3.80506 3.95780 3.97368 4.11851 4.17898 4.37383 4.40443 4.44133 4.46835 4.55854 4.63166 4.68983 4.73294 4.80050 4.84121 4.93523 5.07080 5.10574 5.20141 5.22656 5.30763 5.34753 5.45797 5.48727 5.50445 5.68532 5.73745 5.77450 5.84639 5.92578 6.23144 6.72964 7.14001 7.47383 7.82834 8.46690 9.26185 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.005514 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.087247 B = 5077.206971 C = 6392.446672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.083 4.083 4 C -0.118 4.118 5 C 0.493 3.507 6 O -0.595 6.595 7 N -0.712 5.712 8 C 0.150 3.850 9 H 0.038 0.962 10 C -0.097 4.097 11 C -0.108 4.108 12 H 0.109 0.891 13 C -0.110 4.110 14 C 0.139 3.861 15 H 0.060 0.940 16 C -0.120 4.120 17 N -0.615 5.615 18 C -0.229 4.229 19 H 0.070 0.930 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.967 3.033 23 H -0.279 1.279 24 H -0.278 1.278 25 H -0.296 1.296 26 C 0.190 3.810 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.416 0.584 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.084 0.916 41 H 0.243 0.757 42 H 0.001 0.999 43 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 -20.353 6.856 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.121 4.121 4 C -0.158 4.158 5 C 0.281 3.719 6 O -0.475 6.475 7 N -0.364 5.364 8 C 0.045 3.955 9 H 0.056 0.944 10 C -0.135 4.135 11 C -0.127 4.127 12 H 0.127 0.873 13 C -0.148 4.148 14 C 0.032 3.968 15 H 0.078 0.922 16 C -0.161 4.161 17 N -0.340 5.340 18 C -0.359 4.359 19 H 0.088 0.912 20 C -0.259 4.259 21 N -0.599 5.599 22 Si 0.796 3.204 23 H -0.206 1.206 24 H -0.204 1.204 25 H -0.223 1.223 26 C 0.065 3.935 27 H 0.136 0.864 28 H 0.104 0.896 29 H 0.152 0.848 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.254 0.746 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.102 0.898 41 H 0.052 0.948 42 H 0.019 0.981 43 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 0.351 -19.598 6.190 20.556 hybrid contribution -0.721 1.197 -1.045 1.745 sum -0.370 -18.401 5.145 19.111 Atomic orbital electron populations 1.24050 0.96130 1.02383 1.00823 1.22980 0.96095 0.97798 1.00137 1.20465 0.97736 0.95920 0.97978 1.21614 0.98961 0.93705 1.01514 1.21676 0.79704 0.89870 0.80668 1.90787 1.67167 1.50250 1.39323 1.45980 1.39979 1.19861 1.30533 1.21100 0.93102 0.85025 0.96320 0.94401 1.21833 0.99924 0.98221 0.93493 1.22786 0.95776 0.95219 0.98952 0.87306 1.22939 0.96023 1.02454 0.93373 1.21878 0.91098 0.86525 0.97271 0.92208 1.22692 0.97198 0.99031 0.97161 1.44853 1.51337 1.34161 1.03618 1.19324 1.20809 1.08402 0.87355 0.91164 1.25485 1.00382 1.00546 0.99487 1.70169 1.35810 1.30752 1.23213 0.85236 0.76940 0.78771 0.79442 1.20585 1.20395 1.22295 1.21010 0.94766 0.94386 0.83310 0.86428 0.89646 0.84844 0.93500 0.92220 0.85485 0.86488 0.74609 0.87481 0.91702 0.87359 0.91946 0.96233 0.89794 0.94792 0.98053 0.98025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.30 14.32 67.78 0.97 -2.33 16 2 C -0.15 -2.62 9.52 25.64 0.24 -2.37 16 3 C -0.08 -1.99 4.95 29.85 0.15 -1.84 16 4 C -0.12 -2.37 5.68 29.84 0.17 -2.20 16 5 C 0.49 15.97 7.78 87.65 0.68 16.66 16 6 O -0.60 -27.96 15.65 -3.04 -0.05 -28.01 16 7 N -0.71 -19.72 5.11 -439.28 -2.25 -21.97 16 8 C 0.15 5.44 2.08 45.68 0.10 5.53 16 9 H 0.04 1.97 5.51 -2.39 -0.01 1.96 16 10 C -0.10 -2.75 5.01 30.93 0.16 -2.59 16 11 C -0.11 -3.65 4.26 -9.05 -0.04 -3.69 16 12 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 13 C -0.11 -3.40 6.18 32.17 0.20 -3.20 16 14 C 0.14 5.67 4.25 45.79 0.19 5.86 16 15 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 16 C -0.12 -4.45 5.45 31.57 0.17 -4.28 16 17 N -0.62 -32.77 2.46 -664.48 -1.64 -34.41 16 18 C -0.23 -13.90 10.29 84.03 0.86 -13.04 16 19 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 21 N -0.95 -61.03 10.35 21.65 0.22 -60.80 16 22 Si 0.97 50.30 29.55 68.60 2.03 52.33 16 23 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.28 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 26 C 0.19 9.60 4.11 86.85 0.36 9.95 16 27 H 0.12 1.45 8.06 -2.91 -0.02 1.42 16 28 H 0.09 1.61 7.84 -2.91 -0.02 1.58 16 29 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 30 H 0.05 1.36 7.75 -2.39 -0.02 1.34 16 31 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 32 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.42 7.12 8.60 -92.71 -0.80 6.33 16 35 H 0.11 2.02 7.97 -2.39 -0.02 2.00 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.11 2.39 7.76 -2.39 -0.02 2.37 16 38 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 2.36 8.02 -2.39 -0.02 2.34 16 41 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 43 H 0.00 0.09 6.23 -2.39 -0.01 0.08 16 Total: -1.00 -83.79 338.26 3.18 -80.61 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.18 Total: 13.43 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 4.68 Total: -1.17 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -3.66 Total: -117.18 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.05 Total: -28.01 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.03 Total: 52.33 kcal Total: -83.79 3.18 -80.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724497460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.517 kcal (2) G-P(sol) polarization free energy of solvation -83.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds