Wall clock time and date at job start Tue Mar 31 2020 00:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99925 * 2 1 4 4 C 1.53000 * 109.47306 * 270.00358 * 3 2 1 5 5 C 1.53002 * 109.46767 * 300.00363 * 4 3 2 6 6 C 1.53001 * 109.47199 * 60.00154 * 4 3 2 7 7 C 1.53000 * 109.47252 * 180.02562 * 4 3 2 8 8 N 1.46494 * 109.47518 * 179.97438 * 7 4 3 9 9 C 1.36933 * 120.00465 * 179.97438 * 8 7 4 10 10 H 1.08004 * 119.99580 * 0.02562 * 9 8 7 11 11 C 1.38811 * 120.00343 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00253 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99963 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.46962 * 89.99507 * 13 11 9 15 15 H 1.48491 * 109.47123 * 209.99708 * 13 11 9 16 16 H 1.48502 * 109.46952 * 330.00028 * 13 11 9 17 17 C 1.34777 * 119.99880 * 180.02562 * 2 1 3 18 18 O 1.21613 * 119.99966 * 179.97438 * 17 2 1 19 19 C 1.43207 * 119.99984 * 0.27148 * 17 2 1 20 20 C 3.48137 * 79.58761 * 180.18561 * 2 1 3 21 21 C 4.89318 * 73.79918 * 180.21059 * 2 1 3 22 22 C 1.52996 * 117.49849 * 67.80466 * 21 20 19 23 23 C 1.52999 * 117.50110 * 359.14272 * 21 20 19 24 24 H 1.09001 * 109.47015 * 269.99767 * 1 2 3 25 25 H 1.08997 * 109.47351 * 29.99457 * 1 2 3 26 26 H 1.09001 * 109.47111 * 149.99563 * 1 2 3 27 27 H 1.08994 * 109.47013 * 30.00340 * 3 2 1 28 28 H 1.08996 * 109.46772 * 150.00235 * 3 2 1 29 29 H 1.08993 * 109.47837 * 60.00057 * 5 4 3 30 30 H 1.09004 * 109.46811 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46852 * 299.99366 * 5 4 3 32 32 H 1.08999 * 109.46931 * 59.99594 * 6 4 3 33 33 H 1.09001 * 109.46875 * 180.02562 * 6 4 3 34 34 H 1.09007 * 109.46859 * 300.00243 * 6 4 3 35 35 H 1.08999 * 109.46704 * 300.00299 * 7 4 3 36 36 H 1.08996 * 109.47043 * 59.99744 * 7 4 3 37 37 H 0.97011 * 119.99657 * 359.97438 * 8 7 4 38 38 H 0.96997 * 119.99898 * 180.02562 * 12 11 9 39 39 H 1.09006 * 115.54513 * 213.47418 * 21 20 19 40 40 H 1.08998 * 117.49944 * 0.02562 * 22 21 20 41 41 H 1.09008 * 117.49634 * 145.01839 * 22 21 20 42 42 H 1.08994 * 117.49923 * 214.98032 * 23 21 20 43 43 H 1.09000 * 117.49171 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2793 0.6441 -2.1638 6 6 1.1156 1.8935 -2.1637 7 6 3.2180 3.0352 -1.4425 8 7 3.4627 3.4579 -2.8236 9 6 4.1359 4.6238 -3.0738 10 1 4.4869 5.2315 -2.2528 11 6 4.3682 5.0240 -4.3825 12 7 5.0157 6.1444 -4.6230 13 14 3.7617 3.9725 -5.8024 14 1 2.3887 4.3943 -6.1795 15 1 4.6686 4.1415 -6.9660 16 1 3.7456 2.5460 -5.3903 17 6 2.1389 -1.1672 -0.0005 18 8 3.3550 -1.1672 -0.0010 19 6 1.4229 -2.4074 -0.0070 20 6 0.8359 -3.4240 -0.0111 21 6 0.0998 -4.6988 -0.0173 22 6 -0.6947 -5.0497 -1.2768 23 6 -1.4286 -4.6323 0.0001 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0283 0.5139 28 1 3.1499 1.1383 0.5138 29 1 2.7343 -0.2998 -2.1639 30 1 3.4613 0.9591 -3.1913 31 1 4.2318 0.5138 -1.6500 32 1 0.5265 2.6531 -1.6497 33 1 1.2973 2.2078 -3.1915 34 1 0.5705 0.9495 -2.1637 35 1 2.6293 3.7949 -0.9284 36 1 4.1704 2.9044 -0.9288 37 1 3.1477 2.9118 -3.5610 38 1 5.1777 6.4243 -5.5375 39 1 0.5741 -5.5181 0.5232 40 1 -0.6721 -4.3368 -2.1010 41 1 -0.7435 -6.0999 -1.5648 42 1 -1.9599 -5.4079 0.5515 43 1 -1.8891 -3.6444 0.0165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734017768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:52 Heat of formation + Delta-G solvation = 38.349335 kcal Electronic energy + Delta-G solvation = -21630.500055 eV Core-core repulsion = 18484.951849 eV Total energy + Delta-G solvation = -3145.548206 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39952 -38.89577 -38.46719 -36.59286 -35.03256 -33.69585 -32.65865 -29.04002 -28.40305 -27.62500 -27.28459 -25.19217 -23.97864 -23.28565 -22.11225 -20.37145 -19.42903 -19.03956 -17.65373 -17.38894 -17.14586 -16.53245 -15.98943 -15.78848 -15.61590 -15.15319 -14.83373 -14.53425 -14.30014 -14.02457 -13.85869 -13.50979 -13.39162 -13.27781 -13.02181 -12.88023 -12.64503 -12.53832 -12.40920 -12.34683 -12.25267 -12.13374 -11.77601 -11.74226 -11.61606 -11.31409 -11.04927 -10.99208 -10.71386 -9.74021 -9.28720 -8.03898 -5.35874 0.41288 1.15324 1.33389 1.36771 1.43764 1.87043 2.31752 2.45775 2.91163 3.08309 3.27276 3.60684 3.76616 3.83558 3.86889 3.98310 4.01283 4.04269 4.22712 4.37907 4.41300 4.54869 4.57583 4.73407 4.75655 4.77903 4.81545 4.86414 4.90629 4.97534 5.07805 5.09321 5.10354 5.12074 5.22572 5.33612 5.42334 5.44885 5.75246 6.13117 6.19865 6.20782 6.94645 7.07028 7.84032 8.03079 9.17993 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027200 B = 0.003536 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.169650 B = 7915.973371 C = 8280.056936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.592 5.592 3 C 0.134 3.866 4 C -0.082 4.082 5 C -0.118 4.118 6 C -0.135 4.135 7 C 0.167 3.833 8 N -0.753 5.753 9 C -0.230 4.230 10 H 0.059 0.941 11 C -0.063 4.063 12 N -0.984 5.984 13 Si 0.949 3.051 14 H -0.271 1.271 15 H -0.295 1.295 16 H -0.261 1.261 17 C 0.624 3.376 18 O -0.563 6.563 19 C -0.258 4.258 20 C -0.031 4.031 21 C -0.090 4.090 22 C -0.156 4.156 23 C -0.143 4.143 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.016 0.984 37 H 0.365 0.635 38 H 0.258 0.742 39 H 0.152 0.848 40 H 0.092 0.908 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.806 -24.047 11.325 33.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.322 5.322 3 C 0.011 3.989 4 C -0.084 4.084 5 C -0.176 4.176 6 C -0.192 4.192 7 C 0.040 3.960 8 N -0.400 5.400 9 C -0.361 4.361 10 H 0.077 0.923 11 C -0.255 4.255 12 N -0.635 5.635 13 Si 0.777 3.223 14 H -0.197 1.197 15 H -0.221 1.221 16 H -0.186 1.186 17 C 0.414 3.586 18 O -0.444 6.444 19 C -0.261 4.261 20 C -0.033 4.033 21 C -0.108 4.108 22 C -0.192 4.192 23 C -0.180 4.180 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.093 0.907 27 H 0.133 0.867 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.034 0.966 37 H 0.199 0.801 38 H 0.067 0.933 39 H 0.169 0.831 40 H 0.110 0.890 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.096 -23.815 11.403 32.586 hybrid contribution 0.633 0.063 -1.150 1.314 sum -18.463 -23.753 10.253 31.784 Atomic orbital electron populations 1.22207 0.76785 1.04634 1.03679 1.47640 1.08575 1.04573 1.71446 1.21498 0.98085 0.84247 0.95035 1.21089 0.96480 0.94292 0.96502 1.21667 0.99337 0.97411 0.99171 1.21904 0.95295 1.02169 0.99814 1.20711 0.96504 0.93403 0.85349 1.42734 1.68918 1.24702 1.03621 1.19066 1.26685 0.97608 0.92734 0.92342 1.25445 1.01525 0.98725 0.99775 1.69874 1.48387 1.25299 1.19900 0.85498 0.78140 0.79344 0.79362 1.19723 1.22124 1.18600 1.15009 0.85372 0.81821 0.76420 1.90853 1.14562 1.87497 1.51475 1.20519 1.01189 0.96183 1.08182 1.22081 0.95694 0.93729 0.91835 1.19274 0.93954 0.90511 1.07027 1.23235 1.00699 1.04268 0.91040 1.23258 0.89751 1.04717 1.00244 0.90410 0.88399 0.90723 0.86658 0.90912 0.93450 0.94606 0.94019 0.90654 0.94394 0.90984 0.94194 0.96604 0.80053 0.93335 0.83071 0.88980 0.85357 0.85077 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 9.16 127.77 1.17 2.14 16 2 N -0.59 -13.59 2.40 -855.79 -2.05 -15.64 16 3 C 0.13 3.38 4.60 86.38 0.40 3.77 16 4 C -0.08 -2.54 0.60 -52.18 -0.03 -2.57 16 5 C -0.12 -4.23 6.96 71.98 0.50 -3.73 16 6 C -0.13 -3.58 7.05 71.98 0.51 -3.07 16 7 C 0.17 6.53 5.15 86.38 0.44 6.97 16 8 N -0.75 -36.51 4.81 -343.47 -1.65 -38.16 16 9 C -0.23 -13.53 10.47 84.03 0.88 -12.65 16 10 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 11 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 12 N -0.98 -64.52 13.97 21.65 0.30 -64.22 16 13 Si 0.95 47.07 27.74 68.60 1.90 48.97 16 14 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 15 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 16 H -0.26 -12.07 6.52 99.48 0.65 -11.42 16 17 C 0.62 18.17 5.93 85.49 0.51 18.67 16 18 O -0.56 -21.14 14.85 -4.07 -0.06 -21.20 16 19 C -0.26 -6.38 11.70 30.02 0.35 -6.03 16 20 C -0.03 -0.60 13.47 31.13 0.42 -0.18 16 21 C -0.09 -0.96 6.21 -12.60 -0.08 -1.04 16 22 C -0.16 -1.15 10.21 30.62 0.31 -0.84 16 23 C -0.14 -0.82 10.21 30.62 0.31 -0.51 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 1.15 6.05 -2.39 -0.01 1.14 16 26 H 0.07 0.99 6.88 -2.39 -0.02 0.97 16 27 H 0.12 2.19 8.07 -2.39 -0.02 2.17 16 28 H 0.07 2.12 7.42 -2.39 -0.02 2.10 16 29 H 0.05 1.60 6.14 -2.39 -0.01 1.58 16 30 H 0.03 1.38 6.86 -2.39 -0.02 1.36 16 31 H 0.04 1.63 7.73 -2.38 -0.02 1.61 16 32 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 33 H 0.04 1.19 6.86 -2.39 -0.02 1.17 16 34 H 0.07 1.57 5.99 -2.38 -0.01 1.56 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.37 17.15 3.22 -92.70 -0.30 16.86 16 38 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 39 H 0.15 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -78.18 346.54 5.25 -72.93 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.65 Total: 19.75 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 6.16 Total: -2.43 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -3.40 Total: -118.02 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.06 Total: -21.20 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.90 Total: 48.97 kcal Total: -78.18 5.25 -72.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734017768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.279 kcal (2) G-P(sol) polarization free energy of solvation -78.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds