Wall clock time and date at job start Tue Mar 31 2020 00:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32998 * 119.99535 * 2 1 4 4 C 1.47098 * 120.00285 * 353.10954 * 3 2 1 5 5 O 1.21612 * 120.00024 * 353.76694 * 4 3 2 6 6 N 1.34775 * 119.99732 * 173.49616 * 4 3 2 7 7 C 1.46507 * 119.99672 * 180.27624 * 6 4 3 8 8 H 1.08999 * 109.47091 * 324.99375 * 7 6 4 9 9 C 1.53004 * 109.46749 * 204.99967 * 7 6 4 10 10 N 1.46504 * 109.47254 * 54.99891 * 9 7 6 11 11 C 1.36942 * 119.99936 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99807 * 0.02562 * 11 10 9 13 13 C 1.38809 * 119.99810 * 179.97438 * 11 10 9 14 14 N 1.31614 * 120.00100 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99723 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47018 * 90.00375 * 15 13 11 17 17 H 1.48498 * 109.46876 * 210.00124 * 15 13 11 18 18 H 1.48493 * 109.47036 * 330.00420 * 15 13 11 19 19 C 1.52995 * 109.47222 * 85.00016 * 7 6 4 20 20 C 1.53003 * 117.49835 * 8.74517 * 19 7 6 21 21 C 1.53002 * 117.49895 * 300.08484 * 19 7 6 22 22 C 1.50690 * 120.00221 * 180.02562 * 2 1 3 23 23 C 1.53004 * 117.49810 * 8.74040 * 22 2 1 24 24 C 1.52998 * 117.49631 * 300.08446 * 22 2 1 25 25 H 1.08997 * 109.47510 * 84.53153 * 1 2 3 26 26 H 1.09003 * 109.47199 * 204.53668 * 1 2 3 27 27 H 1.09006 * 109.46966 * 324.52765 * 1 2 3 28 28 H 1.07999 * 119.99490 * 173.11084 * 3 2 1 29 29 H 0.96998 * 120.00284 * 0.27514 * 6 4 3 30 30 H 1.09000 * 109.46803 * 174.99954 * 9 7 6 31 31 H 1.08995 * 109.47335 * 294.99609 * 9 7 6 32 32 H 0.96994 * 119.99845 * 359.97438 * 10 9 7 33 33 H 0.97001 * 119.99871 * 180.02562 * 14 13 11 34 34 H 1.09004 * 115.54924 * 154.41519 * 19 7 6 35 35 H 1.08994 * 117.50014 * 0.02562 * 20 19 7 36 36 H 1.08995 * 117.49440 * 145.02460 * 20 19 7 37 37 H 1.09001 * 117.49710 * 214.98178 * 21 19 7 38 38 H 1.08999 * 117.49759 * 359.97438 * 21 19 7 39 39 H 1.09000 * 115.55245 * 154.41153 * 22 2 1 40 40 H 1.08997 * 117.49936 * 0.02562 * 23 22 2 41 41 H 1.09006 * 117.49930 * 145.02050 * 23 22 2 42 42 H 1.09004 * 117.49655 * 214.98017 * 24 22 2 43 43 H 1.08995 * 117.50304 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4211 -0.1528 5 8 0.2521 2.4136 -0.3923 6 7 2.0980 3.5925 -0.0220 7 6 1.3721 4.8567 -0.1682 8 1 0.5961 4.7445 -0.9253 9 6 2.3456 5.9572 -0.5950 10 7 3.0482 5.5428 -1.8119 11 6 3.9755 6.3728 -2.3835 12 1 4.1891 7.3326 -1.9369 13 6 4.6415 5.9799 -3.5363 14 7 4.3815 4.8099 -4.0802 15 14 5.9069 7.1118 -4.3155 16 1 7.2465 6.8258 -3.7421 17 1 5.9376 6.8842 -5.7827 18 1 5.5424 8.5249 -4.0413 19 6 0.7302 5.2337 1.1684 20 6 1.1101 4.4009 2.3944 21 6 -0.2792 4.2532 1.7688 22 6 2.2605 -1.3050 -0.0006 23 6 1.4521 -2.5874 -0.2074 24 6 2.0246 -2.2574 1.1733 25 1 -0.3634 0.0979 -1.0229 26 1 -0.3634 -0.9349 0.4268 27 1 -0.3633 0.8370 0.5964 28 1 3.2460 1.1552 0.1122 29 1 3.0490 3.5985 0.1690 30 1 1.7925 6.8760 -0.7898 31 1 3.0695 6.1308 0.2012 32 1 2.8566 4.6806 -2.2128 33 1 4.8473 4.5353 -4.8855 34 1 0.5491 6.2980 1.3193 35 1 1.8176 3.5847 2.2488 36 1 1.1784 4.9172 3.3519 37 1 -1.1242 4.6723 2.3151 38 1 -0.4862 3.3397 1.2114 39 1 3.2637 -1.2685 -0.4253 40 1 0.3753 -2.4872 -0.3434 41 1 1.9236 -3.3948 -0.7679 42 1 2.8725 -2.8477 1.5207 43 1 1.3247 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754434529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:15 Heat of formation + Delta-G solvation = 43.443273 kcal Electronic energy + Delta-G solvation = -21875.392539 eV Core-core repulsion = 18730.065222 eV Total energy + Delta-G solvation = -3145.327316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.03877 -38.27530 -36.96964 -34.86015 -33.22835 -33.02601 -31.14389 -28.52114 -27.23952 -24.34651 -23.75478 -22.55447 -22.19590 -21.45879 -20.74480 -19.56588 -18.42942 -17.23288 -16.73800 -16.17371 -15.87880 -15.34582 -14.78941 -14.49488 -14.29433 -13.63027 -13.37120 -13.23183 -12.95786 -12.94613 -12.59516 -11.99146 -11.97427 -11.63140 -11.60831 -11.35915 -11.28124 -11.15799 -10.99165 -10.87212 -10.81835 -10.58631 -10.19746 -10.05238 -9.77624 -9.53679 -9.19956 -8.90295 -8.87727 -8.45861 -6.94846 -5.77146 -3.06916 1.47323 3.42647 3.47573 3.48544 3.50036 3.60288 3.80897 4.11265 4.49537 4.57745 4.68994 4.76966 4.94904 4.97518 5.13697 5.23385 5.25595 5.37732 5.41061 5.55373 5.61889 5.63667 5.70210 5.81674 5.86193 5.88886 5.89714 5.97591 6.04879 6.07418 6.19682 6.27468 6.37603 6.52448 6.53509 6.59848 6.64451 6.75764 7.03617 7.68763 7.99181 8.40719 8.65616 9.52524 10.08854 10.44436 11.45181 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.004647 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.374217 B = 6023.423897 C = 7492.069989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.010 4.010 3 C -0.218 4.218 4 C 0.548 3.452 5 O -0.545 6.545 6 N -0.705 5.705 7 C 0.169 3.831 8 H 0.090 0.910 9 C 0.148 3.852 10 N -0.731 5.731 11 C -0.242 4.242 12 H 0.070 0.930 13 C -0.012 4.012 14 N -0.931 5.931 15 Si 0.907 3.093 16 H -0.290 1.290 17 H -0.292 1.292 18 H -0.282 1.282 19 C -0.160 4.160 20 C -0.177 4.177 21 C -0.187 4.187 22 C -0.130 4.130 23 C -0.173 4.173 24 C -0.168 4.168 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.125 0.875 29 H 0.404 0.596 30 H 0.033 0.967 31 H 0.025 0.975 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.337 -11.209 13.071 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.012 4.012 3 C -0.239 4.239 4 C 0.338 3.662 5 O -0.426 6.426 6 N -0.354 5.354 7 C 0.064 3.936 8 H 0.108 0.892 9 C 0.020 3.980 10 N -0.376 5.376 11 C -0.373 4.373 12 H 0.088 0.912 13 C -0.208 4.208 14 N -0.579 5.579 15 Si 0.738 3.262 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.208 1.208 19 C -0.179 4.179 20 C -0.215 4.215 21 C -0.224 4.224 22 C -0.148 4.148 23 C -0.210 4.210 24 C -0.205 4.205 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.143 0.857 29 H 0.239 0.761 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.064 -11.030 12.850 18.349 hybrid contribution 1.388 0.471 -0.576 1.575 sum -5.676 -10.559 12.275 17.157 Atomic orbital electron populations 1.21140 0.90937 1.01965 1.03724 1.21675 0.95990 0.92195 0.91301 1.22351 1.00415 0.92058 1.09031 1.18399 0.86894 0.84252 0.76624 1.90659 1.15114 1.87612 1.49226 1.45878 1.12967 1.05182 1.71380 1.20713 0.94818 0.83387 0.94721 0.89183 1.20907 0.92908 0.94004 0.90206 1.42353 1.46858 1.21274 1.27153 1.19219 1.13582 0.98699 1.05844 0.91154 1.24742 1.00518 0.97173 0.98351 1.69672 1.45315 1.20272 1.22660 0.86193 0.81481 0.79975 0.78544 1.21739 1.21786 1.20756 1.22697 1.03713 0.97310 0.94230 1.22883 0.99154 1.03185 0.96252 1.23336 0.92165 1.03040 1.03866 1.21280 1.00286 0.88814 1.04387 1.23062 1.00476 0.97891 0.99532 1.22974 1.03616 1.02253 0.91691 0.90272 0.93102 0.89099 0.85734 0.76058 0.94948 0.95683 0.77955 0.93506 0.87434 0.88932 0.89675 0.89922 0.86501 0.86600 0.88056 0.88391 0.88391 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 7.90 36.01 0.28 -1.24 16 2 C -0.01 -0.12 5.81 -101.17 -0.59 -0.71 16 3 C -0.22 -3.06 9.67 -37.81 -0.37 -3.43 16 4 C 0.55 9.00 6.45 -12.67 -0.08 8.92 16 5 O -0.54 -9.89 10.31 5.27 0.05 -9.83 16 6 N -0.70 -11.49 3.05 -54.99 -0.17 -11.66 16 7 C 0.17 2.90 2.59 -67.93 -0.18 2.73 16 8 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 9 C 0.15 2.92 5.80 -4.04 -0.02 2.90 16 10 N -0.73 -18.29 5.43 -59.91 -0.33 -18.62 16 11 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 12 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 13 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 14 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 15 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.16 -2.33 5.70 -90.62 -0.52 -2.84 16 20 C -0.18 -2.34 9.74 -26.69 -0.26 -2.60 16 21 C -0.19 -2.63 9.82 -26.69 -0.26 -2.89 16 22 C -0.13 -1.34 6.00 -91.78 -0.55 -1.89 16 23 C -0.17 -1.49 9.77 -26.69 -0.26 -1.75 16 24 C -0.17 -1.41 10.10 -26.70 -0.27 -1.68 16 25 H 0.08 1.08 8.05 -51.93 -0.42 0.67 16 26 H 0.05 0.52 6.31 -51.93 -0.33 0.19 16 27 H 0.09 1.28 6.12 -51.93 -0.32 0.96 16 28 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.40 6.41 8.59 -40.82 -0.35 6.06 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.39 10.33 7.33 -40.82 -0.30 10.04 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.11 1.46 8.11 -51.93 -0.42 1.03 16 35 H 0.09 1.25 6.67 -51.93 -0.35 0.91 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.12 1.86 5.01 -51.93 -0.26 1.60 16 39 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.10 0.86 6.42 -51.93 -0.33 0.53 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 347.10 15.07 5.23 5.23 Total: -1.00 -30.75 347.10 -9.64 -40.39 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -6.82 Total: 16.41 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -3.32 Total: -11.80 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.23 Total: -57.72 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.05 Total: -9.83 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.75 -9.64 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.833 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds