Wall clock time and date at job start Tue Mar 31 2020 00:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32998 * 119.99535 * 2 1 4 4 C 1.47098 * 120.00285 * 353.10954 * 3 2 1 5 5 O 1.21612 * 120.00024 * 353.76694 * 4 3 2 6 6 N 1.34775 * 119.99732 * 173.49616 * 4 3 2 7 7 C 1.46507 * 119.99672 * 180.27624 * 6 4 3 8 8 H 1.08999 * 109.47091 * 324.99375 * 7 6 4 9 9 C 1.53004 * 109.46749 * 204.99967 * 7 6 4 10 10 N 1.46504 * 109.47254 * 54.99891 * 9 7 6 11 11 C 1.36942 * 119.99936 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99807 * 0.02562 * 11 10 9 13 13 C 1.38809 * 119.99810 * 179.97438 * 11 10 9 14 14 N 1.31614 * 120.00100 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99723 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47018 * 90.00375 * 15 13 11 17 17 H 1.48498 * 109.46876 * 210.00124 * 15 13 11 18 18 H 1.48493 * 109.47036 * 330.00420 * 15 13 11 19 19 C 1.52995 * 109.47222 * 85.00016 * 7 6 4 20 20 C 1.53003 * 117.49835 * 8.74517 * 19 7 6 21 21 C 1.53002 * 117.49895 * 300.08484 * 19 7 6 22 22 C 1.50690 * 120.00221 * 180.02562 * 2 1 3 23 23 C 1.53004 * 117.49810 * 8.74040 * 22 2 1 24 24 C 1.52998 * 117.49631 * 300.08446 * 22 2 1 25 25 H 1.08997 * 109.47510 * 84.53153 * 1 2 3 26 26 H 1.09003 * 109.47199 * 204.53668 * 1 2 3 27 27 H 1.09006 * 109.46966 * 324.52765 * 1 2 3 28 28 H 1.07999 * 119.99490 * 173.11084 * 3 2 1 29 29 H 0.96998 * 120.00284 * 0.27514 * 6 4 3 30 30 H 1.09000 * 109.46803 * 174.99954 * 9 7 6 31 31 H 1.08995 * 109.47335 * 294.99609 * 9 7 6 32 32 H 0.96994 * 119.99845 * 359.97438 * 10 9 7 33 33 H 0.97001 * 119.99871 * 180.02562 * 14 13 11 34 34 H 1.09004 * 115.54924 * 154.41519 * 19 7 6 35 35 H 1.08994 * 117.50014 * 0.02562 * 20 19 7 36 36 H 1.08995 * 117.49440 * 145.02460 * 20 19 7 37 37 H 1.09001 * 117.49710 * 214.98178 * 21 19 7 38 38 H 1.08999 * 117.49759 * 359.97438 * 21 19 7 39 39 H 1.09000 * 115.55245 * 154.41153 * 22 2 1 40 40 H 1.08997 * 117.49936 * 0.02562 * 23 22 2 41 41 H 1.09006 * 117.49930 * 145.02050 * 23 22 2 42 42 H 1.09004 * 117.49655 * 214.98017 * 24 22 2 43 43 H 1.08995 * 117.50304 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4211 -0.1528 5 8 0.2521 2.4136 -0.3923 6 7 2.0980 3.5925 -0.0220 7 6 1.3721 4.8567 -0.1682 8 1 0.5961 4.7445 -0.9253 9 6 2.3456 5.9572 -0.5950 10 7 3.0482 5.5428 -1.8119 11 6 3.9755 6.3728 -2.3835 12 1 4.1891 7.3326 -1.9369 13 6 4.6415 5.9799 -3.5363 14 7 4.3815 4.8099 -4.0802 15 14 5.9069 7.1118 -4.3155 16 1 7.2465 6.8258 -3.7421 17 1 5.9376 6.8842 -5.7827 18 1 5.5424 8.5249 -4.0413 19 6 0.7302 5.2337 1.1684 20 6 1.1101 4.4009 2.3944 21 6 -0.2792 4.2532 1.7688 22 6 2.2605 -1.3050 -0.0006 23 6 1.4521 -2.5874 -0.2074 24 6 2.0246 -2.2574 1.1733 25 1 -0.3634 0.0979 -1.0229 26 1 -0.3634 -0.9349 0.4268 27 1 -0.3633 0.8370 0.5964 28 1 3.2460 1.1552 0.1122 29 1 3.0490 3.5985 0.1690 30 1 1.7925 6.8760 -0.7898 31 1 3.0695 6.1308 0.2012 32 1 2.8566 4.6806 -2.2128 33 1 4.8473 4.5353 -4.8855 34 1 0.5491 6.2980 1.3193 35 1 1.8176 3.5847 2.2488 36 1 1.1784 4.9172 3.3519 37 1 -1.1242 4.6723 2.3151 38 1 -0.4862 3.3397 1.2114 39 1 3.2637 -1.2685 -0.4253 40 1 0.3753 -2.4872 -0.3434 41 1 1.9236 -3.3948 -0.7679 42 1 2.8725 -2.8477 1.5207 43 1 1.3247 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754434529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:15 Heat of formation + Delta-G solvation = 26.106049 kcal Electronic energy + Delta-G solvation = -21876.144337 eV Core-core repulsion = 18730.065222 eV Total energy + Delta-G solvation = -3146.079115 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30681 -39.22666 -38.13271 -36.54535 -34.77123 -34.05026 -33.01771 -30.09386 -28.43813 -26.04824 -24.98149 -23.44856 -23.20951 -22.96103 -21.88373 -20.86498 -19.57188 -19.08226 -17.96397 -17.22280 -17.20934 -16.67069 -16.37338 -15.65857 -15.50123 -15.21826 -15.02104 -14.60564 -14.44001 -14.03087 -13.77853 -13.49359 -13.12721 -12.87222 -12.82617 -12.71948 -12.64977 -12.42854 -12.29400 -12.19687 -12.09401 -11.83616 -11.81075 -11.32755 -11.22672 -10.98944 -10.81413 -10.43289 -10.01129 -9.67571 -9.01929 -7.94609 -5.24583 0.38848 1.47973 1.49561 1.58079 2.27330 2.37713 2.55715 2.97490 3.02240 3.39608 3.57387 3.68010 3.89337 3.96134 4.00134 4.10440 4.15120 4.17820 4.20812 4.32995 4.46211 4.51518 4.65331 4.70415 4.77616 4.82932 4.85693 4.89354 5.00204 5.05622 5.13863 5.15567 5.16315 5.26518 5.27773 5.41182 5.49723 5.56241 5.59476 5.68568 6.25897 6.69400 7.33157 7.36932 8.06503 8.30877 9.28567 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.004647 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.374217 B = 6023.423897 C = 7492.069989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.006 3.994 3 C -0.244 4.244 4 C 0.543 3.457 5 O -0.568 6.568 6 N -0.704 5.704 7 C 0.180 3.820 8 H 0.060 0.940 9 C 0.151 3.849 10 N -0.743 5.743 11 C -0.246 4.246 12 H 0.079 0.921 13 C -0.073 4.073 14 N -0.969 5.969 15 Si 0.974 3.026 16 H -0.285 1.285 17 H -0.298 1.298 18 H -0.269 1.269 19 C -0.168 4.168 20 C -0.162 4.162 21 C -0.187 4.187 22 C -0.153 4.153 23 C -0.167 4.167 24 C -0.153 4.153 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.135 0.865 29 H 0.406 0.594 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.374 0.626 33 H 0.250 0.750 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 -11.571 14.701 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.004 3.996 3 C -0.265 4.265 4 C 0.335 3.665 5 O -0.451 6.451 6 N -0.353 5.353 7 C 0.074 3.926 8 H 0.078 0.922 9 C 0.024 3.976 10 N -0.386 5.386 11 C -0.377 4.377 12 H 0.097 0.903 13 C -0.265 4.265 14 N -0.620 5.620 15 Si 0.803 3.197 16 H -0.212 1.212 17 H -0.225 1.225 18 H -0.194 1.194 19 C -0.187 4.187 20 C -0.199 4.199 21 C -0.224 4.224 22 C -0.171 4.171 23 C -0.204 4.204 24 C -0.189 4.189 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.153 0.847 29 H 0.241 0.759 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.206 0.794 33 H 0.059 0.941 34 H 0.140 0.860 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.673 -11.365 14.525 19.613 hybrid contribution 1.180 0.531 -1.041 1.661 sum -5.493 -10.834 13.484 18.149 Atomic orbital electron populations 1.21076 0.91043 1.02669 1.02665 1.21964 0.96105 0.93008 0.88500 1.22341 1.00904 0.91410 1.11834 1.18803 0.86772 0.84904 0.76048 1.90649 1.16123 1.87964 1.50403 1.45839 1.12961 1.05014 1.71503 1.20438 0.93413 0.83112 0.95625 0.92236 1.21023 0.93201 0.94890 0.88510 1.42526 1.46960 1.20539 1.28588 1.19646 1.13327 0.99058 1.05702 0.90331 1.25560 1.02966 0.98711 0.99282 1.69839 1.46817 1.22222 1.23091 0.85131 0.79041 0.78607 0.76901 1.21180 1.22518 1.19429 1.22614 1.04537 0.98293 0.93286 1.22941 0.98155 1.02407 0.96384 1.23288 0.93269 1.01990 1.03860 1.21315 1.00528 0.88263 1.07023 1.23179 1.00453 0.96794 0.99925 1.23077 1.04007 1.00587 0.91257 0.91690 0.90434 0.90770 0.84710 0.75851 0.94649 0.94383 0.79392 0.94103 0.85960 0.89464 0.87351 0.88046 0.88618 0.86457 0.87922 0.86964 0.86652 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 7.90 71.24 0.56 -2.40 16 2 C 0.01 0.15 5.81 -17.62 -0.10 0.05 16 3 C -0.24 -6.99 9.67 23.43 0.23 -6.77 16 4 C 0.54 18.45 6.45 86.57 0.56 19.01 16 5 O -0.57 -21.54 10.31 -4.07 -0.04 -21.58 16 6 N -0.70 -23.52 3.05 -446.13 -1.36 -24.88 16 7 C 0.18 6.27 2.59 44.99 0.12 6.39 16 8 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 9 C 0.15 5.94 5.80 86.38 0.50 6.44 16 10 N -0.74 -37.65 5.43 -343.44 -1.87 -39.52 16 11 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 12 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 13 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 14 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 15 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 C -0.17 -4.73 5.70 -10.79 -0.06 -4.79 16 20 C -0.16 -3.99 9.74 30.62 0.30 -3.69 16 21 C -0.19 -5.08 9.82 30.62 0.30 -4.78 16 22 C -0.15 -2.95 6.00 -11.54 -0.07 -3.02 16 23 C -0.17 -2.50 9.77 30.62 0.30 -2.20 16 24 C -0.15 -2.16 10.10 30.62 0.31 -1.85 16 25 H 0.06 1.83 8.05 -2.39 -0.02 1.81 16 26 H 0.08 1.47 6.31 -2.39 -0.02 1.46 16 27 H 0.07 2.14 6.12 -2.38 -0.01 2.12 16 28 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 29 H 0.41 13.14 8.59 -92.71 -0.80 12.35 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.37 20.62 7.33 -92.71 -0.68 19.94 16 33 H 0.25 15.00 8.31 -92.71 -0.77 14.22 16 34 H 0.12 3.09 8.11 -2.38 -0.02 3.07 16 35 H 0.09 2.27 6.67 -2.39 -0.02 2.25 16 36 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.10 3.09 5.01 -2.39 -0.01 3.08 16 39 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.10 1.51 6.42 -2.39 -0.02 1.50 16 41 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -66.41 347.10 2.83 -63.58 By element: Atomic # 1 Polarization: 48.38 SS G_CDS: -0.46 Total: 47.92 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 4.25 Total: -14.09 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -2.94 Total: -123.88 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.04 Total: -21.58 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -66.41 2.83 -63.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.684 kcal (2) G-P(sol) polarization free energy of solvation -66.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds