Wall clock time and date at job start Tue Mar 31 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32995 * 119.99792 * 2 1 4 4 C 1.47097 * 120.00203 * 172.95890 * 3 2 1 5 5 O 1.21615 * 120.00280 * 354.04233 * 4 3 2 6 6 N 1.34772 * 120.00302 * 174.03949 * 4 3 2 7 7 C 1.46502 * 120.00359 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.46977 * 324.99671 * 7 6 4 9 9 C 1.52999 * 109.47143 * 205.00050 * 7 6 4 10 10 N 1.46506 * 109.47299 * 55.00094 * 9 7 6 11 11 C 1.36929 * 120.00043 * 179.97438 * 10 9 7 12 12 H 1.08005 * 120.00261 * 359.97438 * 11 10 9 13 13 C 1.38820 * 119.99924 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99742 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99887 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47405 * 59.99679 * 15 13 11 17 17 H 1.48499 * 109.47171 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47010 * 299.99938 * 15 13 11 19 19 C 1.53003 * 109.47270 * 85.00181 * 7 6 4 20 20 C 1.53003 * 117.49641 * 231.25645 * 19 7 6 21 21 C 1.52998 * 117.49408 * 299.91676 * 19 7 6 22 22 C 1.50700 * 120.00401 * 180.02562 * 2 1 3 23 23 C 1.52998 * 117.49604 * 1.64187 * 22 2 1 24 24 C 1.53001 * 60.00073 * 252.51247 * 23 22 2 25 25 H 1.09002 * 109.47020 * 90.00060 * 1 2 3 26 26 H 1.09004 * 109.46660 * 209.99402 * 1 2 3 27 27 H 1.08997 * 109.47450 * 329.99644 * 1 2 3 28 28 H 1.08000 * 119.99952 * 352.96476 * 3 2 1 29 29 H 0.97004 * 120.00304 * 0.02562 * 6 4 3 30 30 H 1.09002 * 109.47201 * 174.99934 * 9 7 6 31 31 H 1.09001 * 109.47348 * 294.99751 * 9 7 6 32 32 H 0.96999 * 119.99563 * 359.97438 * 10 9 7 33 33 H 0.97002 * 119.99717 * 180.02562 * 14 13 11 34 34 H 1.08994 * 115.54777 * 85.58543 * 19 7 6 35 35 H 1.09003 * 117.49390 * 214.99884 * 20 19 7 36 36 H 1.08998 * 117.49615 * 0.02562 * 20 19 7 37 37 H 1.09003 * 117.50492 * 359.96957 * 21 19 7 38 38 H 1.09001 * 117.50078 * 144.97504 * 21 19 7 39 39 H 1.09004 * 115.54976 * 147.35338 * 22 2 1 40 40 H 1.08996 * 117.50188 * 0.02562 * 23 22 2 41 41 H 1.09001 * 117.49484 * 145.02681 * 23 22 2 42 42 H 1.09000 * 117.49968 * 252.51435 * 24 23 22 43 43 H 1.08997 * 117.51887 * 107.48190 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6346 1.1567 0.1562 5 8 4.2243 0.1199 0.3934 6 7 4.3212 2.3102 0.0363 7 6 5.7780 2.3150 0.1912 8 1 6.0656 1.5827 0.9457 9 6 6.2398 3.7064 0.6290 10 7 5.5218 4.0994 1.8440 11 6 5.7717 5.3143 2.4243 12 1 6.4984 5.9826 1.9864 13 6 5.0910 5.6869 3.5753 14 7 4.2058 4.8722 4.1091 15 14 5.4314 7.3444 4.3664 16 1 5.1208 8.4277 3.3994 17 1 4.5821 7.5001 5.5746 18 1 6.8627 7.4230 4.7547 19 6 6.4341 1.9564 -1.1437 20 6 7.4795 0.8392 -1.1395 21 6 6.0984 0.5934 -1.7522 22 6 2.2606 -1.3051 -0.0006 23 6 1.4390 -2.5951 -0.0400 24 6 2.1542 -2.1827 1.2481 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6380 2.0836 -0.1146 29 1 3.8510 3.1373 -0.1527 30 1 7.3109 3.6872 0.8300 31 1 6.0318 4.4245 -0.1643 32 1 4.8694 3.4990 2.2375 33 1 3.7299 5.1327 4.9132 34 1 6.5902 2.7892 -1.8294 35 1 8.3233 0.9370 -1.8226 36 1 7.6995 0.3594 -0.1858 37 1 5.4105 -0.0481 -1.2014 38 1 6.0332 0.5294 -2.8384 39 1 3.2128 -1.2979 -0.5311 40 1 0.3535 -2.5000 -0.0660 41 1 1.8506 -3.4370 -0.5967 42 1 3.0362 -2.7533 1.5389 43 1 1.5395 -1.8161 2.0702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754434530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:19 Heat of formation + Delta-G solvation = 40.554503 kcal Electronic energy + Delta-G solvation = -21940.410240 eV Core-core repulsion = 18794.957657 eV Total energy + Delta-G solvation = -3145.452583 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86984 -38.08456 -36.74778 -34.94332 -33.36427 -33.17999 -31.06004 -28.59937 -27.38492 -24.10449 -23.31491 -22.27092 -22.09037 -21.48704 -20.88055 -19.91659 -18.43046 -17.27006 -16.71661 -16.13311 -15.50359 -14.95030 -14.83940 -14.56290 -14.15937 -13.63223 -13.36553 -13.15610 -13.05589 -12.91230 -12.74917 -12.32364 -12.00935 -11.62564 -11.53489 -11.27085 -11.17883 -10.96545 -10.88913 -10.78777 -10.69454 -10.31664 -10.19941 -10.02526 -9.89107 -9.65849 -9.12786 -8.89087 -8.81283 -8.42024 -6.94895 -5.76916 -3.06693 1.50372 3.43326 3.47840 3.48923 3.56542 3.59183 4.04812 4.22036 4.56930 4.62039 4.87179 4.94295 5.05947 5.14044 5.17722 5.22355 5.33133 5.44581 5.47438 5.52969 5.56202 5.61938 5.63378 5.81185 5.84590 5.88336 5.95264 5.96846 6.11949 6.15850 6.26984 6.31193 6.40969 6.47390 6.54859 6.57829 6.65419 6.76011 7.05938 7.68304 8.04356 8.40927 8.71372 9.52622 10.08980 10.44707 11.45349 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.004799 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.091565 B = 5832.742904 C = 7168.701254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.015 4.015 3 C -0.214 4.214 4 C 0.549 3.451 5 O -0.544 6.544 6 N -0.704 5.704 7 C 0.170 3.830 8 H 0.087 0.913 9 C 0.148 3.852 10 N -0.731 5.731 11 C -0.243 4.243 12 H 0.070 0.930 13 C -0.011 4.011 14 N -0.931 5.931 15 Si 0.908 3.092 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.286 1.286 19 C -0.161 4.161 20 C -0.172 4.172 21 C -0.184 4.184 22 C -0.111 4.111 23 C -0.194 4.194 24 C -0.155 4.155 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.126 0.874 29 H 0.403 0.597 30 H 0.034 0.966 31 H 0.024 0.976 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 -11.643 -12.214 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.017 4.017 3 C -0.235 4.235 4 C 0.339 3.661 5 O -0.425 6.425 6 N -0.353 5.353 7 C 0.065 3.935 8 H 0.105 0.895 9 C 0.020 3.980 10 N -0.376 5.376 11 C -0.374 4.374 12 H 0.088 0.912 13 C -0.208 4.208 14 N -0.579 5.579 15 Si 0.738 3.262 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.213 1.213 19 C -0.181 4.181 20 C -0.210 4.210 21 C -0.221 4.221 22 C -0.128 4.128 23 C -0.231 4.231 24 C -0.192 4.192 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.144 0.856 29 H 0.238 0.762 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.221 0.779 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.151 0.849 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.446 -12.174 -11.984 17.652 hybrid contribution -0.205 1.385 0.538 1.500 sum -4.651 -10.789 -11.446 16.403 Atomic orbital electron populations 1.20984 0.91444 1.03239 1.02642 1.21711 0.94984 0.93326 0.91707 1.22431 0.93896 0.98576 1.08631 1.18415 0.87555 0.83599 0.76535 1.90637 1.70904 1.31613 1.49395 1.45869 1.07700 1.10241 1.71465 1.20749 0.79128 0.99393 0.94257 0.89520 1.20915 0.95935 0.90960 0.90215 1.42342 1.48284 1.19659 1.27325 1.19177 1.18566 0.93728 1.05967 0.91209 1.24743 0.99203 0.98443 0.98365 1.69663 1.28967 1.36325 1.22982 0.86268 0.77460 0.83737 0.78695 1.21273 1.21702 1.21262 1.22651 1.03520 0.92589 0.99367 1.22892 0.92533 1.02756 1.02805 1.23260 0.99537 0.99765 0.99576 1.21423 1.00302 0.87701 1.03406 1.23124 0.98954 0.98837 1.02185 1.22779 1.02521 1.02582 0.91357 0.90638 0.91019 0.90913 0.85582 0.76224 0.94840 0.95851 0.77946 0.93453 0.88047 0.89343 0.88797 0.86436 0.90074 0.84944 0.88858 0.88942 0.88654 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.49 36.00 0.34 -0.85 16 2 C -0.02 -0.19 5.80 -101.17 -0.59 -0.78 16 3 C -0.21 -3.01 9.62 -37.81 -0.36 -3.37 16 4 C 0.55 9.10 7.00 -12.67 -0.09 9.01 16 5 O -0.54 -9.88 10.34 5.26 0.05 -9.83 16 6 N -0.70 -11.63 4.49 -54.99 -0.25 -11.87 16 7 C 0.17 2.94 2.43 -67.93 -0.17 2.77 16 8 H 0.09 1.71 7.33 -51.93 -0.38 1.33 16 9 C 0.15 2.95 5.80 -4.04 -0.02 2.92 16 10 N -0.73 -18.35 5.43 -59.90 -0.33 -18.67 16 11 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 12 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 13 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 14 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 15 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 C -0.16 -2.36 5.36 -90.62 -0.49 -2.85 16 20 C -0.17 -2.33 10.18 -26.69 -0.27 -2.60 16 21 C -0.18 -2.58 9.73 -26.69 -0.26 -2.84 16 22 C -0.11 -1.43 4.35 -91.77 -0.40 -1.83 16 23 C -0.19 -1.99 9.79 -26.73 -0.26 -2.25 16 24 C -0.16 -1.90 10.23 -26.73 -0.27 -2.18 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.61 6.37 -51.93 -0.33 0.28 16 27 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 28 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.40 6.42 8.59 -40.82 -0.35 6.07 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.39 10.37 7.33 -40.82 -0.30 10.07 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.10 1.39 8.11 -51.93 -0.42 0.97 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 37 H 0.12 1.87 5.02 -51.93 -0.26 1.61 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.13 1.96 6.24 -51.93 -0.32 1.63 16 40 H 0.09 0.83 6.31 -51.93 -0.33 0.50 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -30.82 350.24 -9.51 -40.33 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -6.88 Total: 17.10 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -3.08 Total: -12.19 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.15 Total: -57.99 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.05 Total: -9.83 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.82 -9.51 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.883 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds