Wall clock time and date at job start Tue Mar 31 2020 00:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32991 * 119.99538 * 2 1 4 4 C 1.47098 * 120.00325 * 4.28850 * 3 2 1 5 5 O 1.21617 * 120.00162 * 354.11860 * 4 3 2 6 6 N 1.34782 * 120.00215 * 174.11675 * 4 3 2 7 7 C 1.46494 * 120.00041 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47452 * 35.00076 * 7 6 4 9 9 C 1.53002 * 109.47022 * 155.00254 * 7 6 4 10 10 N 1.46497 * 109.46931 * 304.99570 * 9 7 6 11 11 C 1.36944 * 120.00090 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99589 * 0.02562 * 11 10 9 13 13 C 1.38807 * 119.99851 * 180.02562 * 11 10 9 14 14 N 1.31618 * 120.00282 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99694 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47136 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47265 * 120.00464 * 15 13 11 18 18 H 1.48505 * 109.47064 * 240.00014 * 15 13 11 19 19 C 1.53000 * 109.47124 * 274.99932 * 7 6 4 20 20 C 1.52996 * 117.49832 * 128.74929 * 19 7 6 21 21 C 1.52998 * 117.50066 * 60.08995 * 19 7 6 22 22 C 1.50700 * 120.00238 * 179.97438 * 2 1 3 23 23 C 1.52996 * 117.49925 * 4.38487 * 22 2 1 24 24 C 1.52994 * 117.49959 * 295.72272 * 22 2 1 25 25 H 1.08999 * 109.47594 * 64.21771 * 1 2 3 26 26 H 1.08999 * 109.46551 * 184.21640 * 1 2 3 27 27 H 1.09001 * 109.47433 * 304.21069 * 1 2 3 28 28 H 1.08010 * 119.99926 * 184.29332 * 3 2 1 29 29 H 0.97000 * 120.00017 * 359.97438 * 6 4 3 30 30 H 1.09009 * 109.47017 * 185.00103 * 9 7 6 31 31 H 1.08994 * 109.47411 * 64.99627 * 9 7 6 32 32 H 0.97003 * 120.00426 * 359.73122 * 10 9 7 33 33 H 0.97000 * 119.99826 * 179.97438 * 14 13 11 34 34 H 1.08997 * 115.55138 * 274.41777 * 19 7 6 35 35 H 1.09000 * 117.50126 * 359.97438 * 20 19 7 36 36 H 1.08998 * 117.50376 * 145.02210 * 20 19 7 37 37 H 1.08995 * 117.50106 * 214.98072 * 21 19 7 38 38 H 1.09005 * 117.49575 * 359.97190 * 21 19 7 39 39 H 1.09003 * 115.55029 * 150.05203 * 22 2 1 40 40 H 1.09003 * 117.50112 * 359.97438 * 23 22 2 41 41 H 1.08994 * 117.50171 * 145.02081 * 23 22 2 42 42 H 1.08994 * 117.50068 * 214.98018 * 24 22 2 43 43 H 1.08999 * 117.50063 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4394 2.4239 0.0953 5 8 0.2236 2.4292 0.0662 6 7 2.1157 3.5836 0.2148 7 6 1.3862 4.8504 0.3102 8 1 0.4615 4.6963 0.8663 9 6 2.2511 5.8836 1.0352 10 7 2.6649 5.3485 2.3346 11 6 3.4513 6.1008 3.1659 12 1 3.7661 7.0886 2.8636 13 6 3.8438 5.5935 4.3969 14 7 3.4605 4.3894 4.7651 15 14 4.9160 6.6199 5.5311 16 1 5.2064 7.9270 4.8890 17 1 4.2039 6.8467 6.8144 18 1 6.1896 5.9021 5.7920 19 6 1.0576 5.3568 -1.0956 20 6 -0.3945 5.7410 -1.3866 21 6 0.1935 4.4608 -1.9852 22 6 2.2606 -1.3051 0.0006 23 6 1.4420 -2.5935 -0.1026 24 6 2.1037 -2.2108 1.2236 25 1 -0.3634 0.4470 -0.9253 26 1 -0.3632 -1.0249 0.0756 27 1 -0.3634 0.5778 0.8498 28 1 3.2497 1.1532 -0.0700 29 1 3.0854 3.5794 0.2384 30 1 1.6764 6.7977 1.1850 31 1 3.1340 6.1037 0.4351 32 1 2.3789 4.4628 2.6078 33 1 3.7351 4.0348 5.6252 34 1 1.8395 5.9422 -1.5792 35 1 -1.1158 5.6326 -0.5766 36 1 -0.5679 6.5788 -2.0619 37 1 0.4068 4.4570 -3.0541 38 1 -0.1404 3.5103 -1.5691 39 1 3.2336 -1.2863 -0.4904 40 1 0.3583 -2.4973 -0.1705 41 1 1.8766 -3.4225 -0.6610 42 1 2.9734 -2.7882 1.5371 43 1 1.4559 -1.8626 2.0280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754434531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:25 Heat of formation + Delta-G solvation = 39.566075 kcal Electronic energy + Delta-G solvation = -21761.878591 eV Core-core repulsion = 18616.383147 eV Total energy + Delta-G solvation = -3145.495444 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.84838 -38.20989 -36.99878 -34.96455 -33.33845 -32.98509 -31.09255 -28.47235 -27.16655 -24.34695 -23.67990 -22.49208 -22.08963 -21.47178 -20.63619 -19.90625 -18.38985 -17.21549 -16.74208 -16.16881 -15.58713 -15.14509 -14.92832 -14.55391 -14.30426 -13.74037 -13.35611 -13.14456 -12.95579 -12.86248 -12.62773 -12.08186 -12.01282 -11.63258 -11.52972 -11.25961 -11.15930 -10.99146 -10.88193 -10.85355 -10.81140 -10.54444 -10.14322 -10.04298 -9.88916 -9.66234 -9.20336 -8.91018 -8.88553 -8.40106 -6.95069 -5.77558 -3.07321 1.52566 3.42194 3.47895 3.50274 3.52701 3.55217 3.83178 4.21231 4.56482 4.57942 4.74234 4.80963 4.94435 4.96673 5.13446 5.22796 5.30491 5.38739 5.46038 5.53789 5.58903 5.68785 5.75595 5.83403 5.89024 5.93701 5.96814 5.98227 6.00521 6.12080 6.23674 6.26944 6.41344 6.53704 6.56188 6.61402 6.65582 6.75525 7.05343 7.69058 8.03365 8.40303 8.69462 9.52179 10.08458 10.44022 11.44851 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012285 B = 0.005080 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.576234 B = 5510.729040 C = 7473.280577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.011 4.011 3 C -0.216 4.216 4 C 0.549 3.451 5 O -0.549 6.549 6 N -0.703 5.703 7 C 0.169 3.831 8 H 0.087 0.913 9 C 0.148 3.852 10 N -0.732 5.732 11 C -0.242 4.242 12 H 0.071 0.929 13 C -0.012 4.012 14 N -0.931 5.931 15 Si 0.907 3.093 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.162 4.162 20 C -0.172 4.172 21 C -0.184 4.184 22 C -0.129 4.129 23 C -0.179 4.179 24 C -0.164 4.164 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.403 0.597 30 H 0.034 0.966 31 H 0.024 0.976 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 -9.685 -13.500 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.013 4.013 3 C -0.237 4.237 4 C 0.339 3.661 5 O -0.431 6.431 6 N -0.352 5.352 7 C 0.065 3.935 8 H 0.105 0.895 9 C 0.020 3.980 10 N -0.377 5.377 11 C -0.373 4.373 12 H 0.089 0.911 13 C -0.208 4.208 14 N -0.579 5.579 15 Si 0.738 3.262 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.182 4.182 20 C -0.210 4.210 21 C -0.221 4.221 22 C -0.147 4.147 23 C -0.215 4.215 24 C -0.201 4.201 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.141 0.859 29 H 0.238 0.762 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.220 0.780 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.760 -9.505 -13.437 17.133 hybrid contribution 1.266 0.405 0.792 1.547 sum -3.494 -9.100 -12.645 15.966 Atomic orbital electron populations 1.21090 0.90829 1.00942 1.04433 1.21682 0.96076 0.92209 0.91363 1.22322 1.00157 0.92061 1.09146 1.18381 0.87304 0.84227 0.76145 1.90661 1.13727 1.87352 1.51344 1.45838 1.10563 1.05622 1.73201 1.20755 0.96654 0.83266 0.92869 0.89532 1.20915 0.95174 0.94107 0.87818 1.42365 1.61054 1.19297 1.14937 1.19267 1.22879 0.98155 0.96973 0.91091 1.24745 1.01258 0.96826 0.97984 1.69684 1.49808 1.16375 1.22040 0.86126 0.79924 0.79257 0.80919 1.20544 1.21869 1.21878 1.22648 0.94164 1.04064 0.97286 1.22888 0.95848 0.98744 1.03506 1.23262 1.03993 0.96887 0.97978 1.21224 1.00290 0.89128 1.04087 1.23133 0.99985 0.97594 1.00814 1.22986 1.03419 1.01997 0.91675 0.90247 0.93030 0.89429 0.85877 0.76183 0.94829 0.95805 0.77961 0.93556 0.88046 0.88799 0.89341 0.90080 0.86361 0.86822 0.87897 0.88565 0.88281 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 8.22 36.01 0.30 -1.22 16 2 C -0.01 -0.15 5.81 -101.17 -0.59 -0.73 16 3 C -0.22 -3.08 9.67 -37.81 -0.37 -3.44 16 4 C 0.55 9.14 7.06 -12.66 -0.09 9.05 16 5 O -0.55 -9.99 10.13 5.26 0.05 -9.93 16 6 N -0.70 -11.68 4.50 -54.99 -0.25 -11.93 16 7 C 0.17 2.94 2.43 -67.93 -0.17 2.78 16 8 H 0.09 1.70 7.33 -51.93 -0.38 1.32 16 9 C 0.15 2.95 5.80 -4.04 -0.02 2.92 16 10 N -0.73 -18.36 5.43 -59.91 -0.33 -18.68 16 11 C -0.24 -6.71 9.99 -15.06 -0.15 -6.87 16 12 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 13 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 14 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 15 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 19 C -0.16 -2.38 5.36 -90.62 -0.49 -2.87 16 20 C -0.17 -2.34 10.18 -26.70 -0.27 -2.61 16 21 C -0.18 -2.61 9.74 -26.70 -0.26 -2.87 16 22 C -0.13 -1.36 6.00 -91.78 -0.55 -1.91 16 23 C -0.18 -1.56 9.86 -26.70 -0.26 -1.82 16 24 C -0.16 -1.60 10.23 -26.70 -0.27 -1.87 16 25 H 0.08 1.07 7.58 -51.93 -0.39 0.67 16 26 H 0.05 0.55 5.44 -51.93 -0.28 0.27 16 27 H 0.09 1.34 6.84 -51.93 -0.36 0.98 16 28 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.40 6.48 8.58 -40.82 -0.35 6.13 16 30 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.39 10.37 7.34 -40.82 -0.30 10.07 16 33 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.10 1.40 8.11 -51.93 -0.42 0.98 16 35 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.12 1.91 5.01 -51.93 -0.26 1.65 16 39 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 0.88 5.90 -51.93 -0.31 0.57 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -30.78 349.35 -9.66 -40.44 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -6.82 Total: 16.88 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -3.29 Total: -11.90 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.15 Total: -58.06 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.05 Total: -9.93 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.78 -9.66 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.003 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds