Wall clock time and date at job start Tue Mar 31 2020 00:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32991 * 119.99538 * 2 1 4 4 C 1.47098 * 120.00325 * 4.28850 * 3 2 1 5 5 O 1.21617 * 120.00162 * 354.11860 * 4 3 2 6 6 N 1.34782 * 120.00215 * 174.11675 * 4 3 2 7 7 C 1.46494 * 120.00041 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47452 * 35.00076 * 7 6 4 9 9 C 1.53002 * 109.47022 * 155.00254 * 7 6 4 10 10 N 1.46497 * 109.46931 * 304.99570 * 9 7 6 11 11 C 1.36944 * 120.00090 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99589 * 0.02562 * 11 10 9 13 13 C 1.38807 * 119.99851 * 180.02562 * 11 10 9 14 14 N 1.31618 * 120.00282 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99694 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47136 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47265 * 120.00464 * 15 13 11 18 18 H 1.48505 * 109.47064 * 240.00014 * 15 13 11 19 19 C 1.53000 * 109.47124 * 274.99932 * 7 6 4 20 20 C 1.52996 * 117.49832 * 128.74929 * 19 7 6 21 21 C 1.52998 * 117.50066 * 60.08995 * 19 7 6 22 22 C 1.50700 * 120.00238 * 179.97438 * 2 1 3 23 23 C 1.52996 * 117.49925 * 4.38487 * 22 2 1 24 24 C 1.52994 * 117.49959 * 295.72272 * 22 2 1 25 25 H 1.08999 * 109.47594 * 64.21771 * 1 2 3 26 26 H 1.08999 * 109.46551 * 184.21640 * 1 2 3 27 27 H 1.09001 * 109.47433 * 304.21069 * 1 2 3 28 28 H 1.08010 * 119.99926 * 184.29332 * 3 2 1 29 29 H 0.97000 * 120.00017 * 359.97438 * 6 4 3 30 30 H 1.09009 * 109.47017 * 185.00103 * 9 7 6 31 31 H 1.08994 * 109.47411 * 64.99627 * 9 7 6 32 32 H 0.97003 * 120.00426 * 359.73122 * 10 9 7 33 33 H 0.97000 * 119.99826 * 179.97438 * 14 13 11 34 34 H 1.08997 * 115.55138 * 274.41777 * 19 7 6 35 35 H 1.09000 * 117.50126 * 359.97438 * 20 19 7 36 36 H 1.08998 * 117.50376 * 145.02210 * 20 19 7 37 37 H 1.08995 * 117.50106 * 214.98072 * 21 19 7 38 38 H 1.09005 * 117.49575 * 359.97190 * 21 19 7 39 39 H 1.09003 * 115.55029 * 150.05203 * 22 2 1 40 40 H 1.09003 * 117.50112 * 359.97438 * 23 22 2 41 41 H 1.08994 * 117.50171 * 145.02081 * 23 22 2 42 42 H 1.08994 * 117.50068 * 214.98018 * 24 22 2 43 43 H 1.08999 * 117.50063 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4394 2.4239 0.0953 5 8 0.2236 2.4292 0.0662 6 7 2.1157 3.5836 0.2148 7 6 1.3862 4.8504 0.3102 8 1 0.4615 4.6963 0.8663 9 6 2.2511 5.8836 1.0352 10 7 2.6649 5.3485 2.3346 11 6 3.4513 6.1008 3.1659 12 1 3.7661 7.0886 2.8636 13 6 3.8438 5.5935 4.3969 14 7 3.4605 4.3894 4.7651 15 14 4.9160 6.6199 5.5311 16 1 5.2064 7.9270 4.8890 17 1 4.2039 6.8467 6.8144 18 1 6.1896 5.9021 5.7920 19 6 1.0576 5.3568 -1.0956 20 6 -0.3945 5.7410 -1.3866 21 6 0.1935 4.4608 -1.9852 22 6 2.2606 -1.3051 0.0006 23 6 1.4420 -2.5935 -0.1026 24 6 2.1037 -2.2108 1.2236 25 1 -0.3634 0.4470 -0.9253 26 1 -0.3632 -1.0249 0.0756 27 1 -0.3634 0.5778 0.8498 28 1 3.2497 1.1532 -0.0700 29 1 3.0854 3.5794 0.2384 30 1 1.6764 6.7977 1.1850 31 1 3.1340 6.1037 0.4351 32 1 2.3789 4.4628 2.6078 33 1 3.7351 4.0348 5.6252 34 1 1.8395 5.9422 -1.5792 35 1 -1.1158 5.6326 -0.5766 36 1 -0.5679 6.5788 -2.0619 37 1 0.4068 4.4570 -3.0541 38 1 -0.1404 3.5103 -1.5691 39 1 3.2336 -1.2863 -0.4904 40 1 0.3583 -2.4973 -0.1705 41 1 1.8766 -3.4225 -0.6610 42 1 2.9734 -2.7882 1.5371 43 1 1.4559 -1.8626 2.0280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754434531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:23 Heat of formation + Delta-G solvation = 21.634222 kcal Electronic energy + Delta-G solvation = -21762.656175 eV Core-core repulsion = 18616.383147 eV Total energy + Delta-G solvation = -3146.273028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.13358 -39.20309 -38.17505 -36.61617 -34.94575 -34.03836 -32.98987 -30.02961 -28.41966 -26.03437 -24.96405 -23.28132 -23.20281 -23.05301 -21.80027 -21.23136 -19.55724 -19.07683 -18.02177 -17.27404 -16.73715 -16.65524 -16.45201 -15.83415 -15.55688 -15.22007 -14.99174 -14.62751 -14.41386 -14.09199 -13.77695 -13.53314 -13.18799 -12.98460 -12.82719 -12.67686 -12.50243 -12.44213 -12.27565 -12.08128 -12.04038 -11.85137 -11.72192 -11.31728 -11.21733 -11.05577 -11.00141 -10.45505 -10.03245 -9.64988 -9.02712 -7.95212 -5.25319 0.41325 1.47727 1.48607 1.58706 2.24981 2.36632 2.55471 2.98184 3.08300 3.39153 3.59207 3.64221 3.91842 3.96406 3.97360 4.11169 4.13873 4.17290 4.18684 4.27263 4.41627 4.47878 4.64616 4.65825 4.81990 4.83238 4.86391 4.90237 5.00590 5.04744 5.11636 5.14187 5.15642 5.27400 5.29616 5.40211 5.49498 5.56198 5.59190 5.68338 6.25426 6.72011 7.32587 7.38959 8.05500 8.29965 9.28197 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012285 B = 0.005080 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.576234 B = 5510.729040 C = 7473.280577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.000 4.000 3 C -0.239 4.239 4 C 0.542 3.458 5 O -0.571 6.571 6 N -0.704 5.704 7 C 0.180 3.820 8 H 0.056 0.944 9 C 0.150 3.850 10 N -0.743 5.743 11 C -0.245 4.245 12 H 0.079 0.921 13 C -0.073 4.073 14 N -0.969 5.969 15 Si 0.974 3.026 16 H -0.264 1.264 17 H -0.296 1.296 18 H -0.292 1.292 19 C -0.165 4.165 20 C -0.164 4.164 21 C -0.180 4.180 22 C -0.145 4.145 23 C -0.161 4.161 24 C -0.168 4.168 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.138 0.862 29 H 0.406 0.594 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.374 0.626 33 H 0.250 0.750 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 -9.837 -14.901 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.002 4.002 3 C -0.260 4.260 4 C 0.334 3.666 5 O -0.454 6.454 6 N -0.353 5.353 7 C 0.075 3.925 8 H 0.075 0.925 9 C 0.023 3.977 10 N -0.386 5.386 11 C -0.376 4.376 12 H 0.097 0.903 13 C -0.265 4.265 14 N -0.620 5.620 15 Si 0.803 3.197 16 H -0.189 1.189 17 H -0.224 1.224 18 H -0.219 1.219 19 C -0.185 4.185 20 C -0.202 4.202 21 C -0.217 4.217 22 C -0.163 4.163 23 C -0.197 4.197 24 C -0.205 4.205 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.241 0.759 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.206 0.794 33 H 0.059 0.941 34 H 0.137 0.863 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.145 0.855 40 H 0.123 0.877 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.996 -9.626 -14.878 18.165 hybrid contribution 0.947 0.419 1.191 1.578 sum -3.049 -9.206 -13.687 16.775 Atomic orbital electron populations 1.21019 0.91171 1.01898 1.02854 1.21972 0.96087 0.93183 0.88910 1.22358 1.00857 0.91300 1.11486 1.18820 0.87249 0.84921 0.75632 1.90652 1.14680 1.87693 1.52405 1.45823 1.10590 1.05533 1.73345 1.20497 0.94762 0.83138 0.94078 0.92539 1.21034 0.95947 0.94640 0.86037 1.42536 1.60857 1.18712 1.16513 1.19685 1.22200 0.98462 0.97289 0.90292 1.25563 1.03200 0.98031 0.99738 1.69847 1.51618 1.18212 1.22312 0.85068 0.77819 0.78306 0.78506 1.18852 1.22380 1.21931 1.22555 0.95384 1.04891 0.95681 1.22971 0.94565 0.99306 1.03349 1.23198 1.03627 0.96060 0.98815 1.21305 1.01141 0.88432 1.05403 1.23241 0.99985 0.96791 0.99719 1.23057 1.04074 1.01847 0.91565 0.90876 0.90547 0.92176 0.84419 0.75921 0.94703 0.94295 0.79407 0.94088 0.86336 0.90078 0.86679 0.87978 0.88602 0.85486 0.87717 0.86323 0.86789 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.97 8.22 71.24 0.59 -2.38 16 2 C 0.00 0.01 5.81 -17.62 -0.10 -0.09 16 3 C -0.24 -6.89 9.67 23.43 0.23 -6.67 16 4 C 0.54 18.65 7.06 86.57 0.61 19.26 16 5 O -0.57 -21.73 10.13 -4.08 -0.04 -21.77 16 6 N -0.70 -23.90 4.50 -446.14 -2.01 -25.91 16 7 C 0.18 6.35 2.43 44.99 0.11 6.45 16 8 H 0.06 2.33 7.33 -2.39 -0.02 2.31 16 9 C 0.15 5.96 5.80 86.38 0.50 6.46 16 10 N -0.74 -37.73 5.43 -343.45 -1.87 -39.60 16 11 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 12 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 13 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 14 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 15 Si 0.97 46.02 29.55 68.60 2.03 48.04 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 C -0.17 -4.69 5.36 -10.80 -0.06 -4.75 16 20 C -0.16 -4.26 10.18 30.62 0.31 -3.95 16 21 C -0.18 -4.91 9.74 30.62 0.30 -4.62 16 22 C -0.14 -2.81 6.00 -11.54 -0.07 -2.88 16 23 C -0.16 -2.40 9.86 30.62 0.30 -2.10 16 24 C -0.17 -3.02 10.23 30.62 0.31 -2.70 16 25 H 0.07 2.00 7.58 -2.39 -0.02 1.99 16 26 H 0.08 1.56 5.44 -2.39 -0.01 1.55 16 27 H 0.06 1.93 6.84 -2.39 -0.02 1.91 16 28 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.41 13.23 8.58 -92.71 -0.80 12.43 16 30 H 0.04 1.39 8.14 -2.38 -0.02 1.38 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.37 20.67 7.34 -92.71 -0.68 19.99 16 33 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.12 2.99 8.11 -2.39 -0.02 2.97 16 35 H 0.08 2.31 8.05 -2.39 -0.02 2.29 16 36 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.10 3.13 5.01 -2.38 -0.01 3.12 16 39 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.10 1.53 5.90 -2.39 -0.01 1.51 16 41 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -66.64 349.35 2.27 -64.36 By element: Atomic # 1 Polarization: 49.23 SS G_CDS: -0.46 Total: 48.77 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 4.33 Total: -14.41 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -3.59 Total: -124.99 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.04 Total: -21.77 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -66.64 2.27 -64.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.996 kcal (2) G-P(sol) polarization free energy of solvation -66.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds