Wall clock time and date at job start Tue Mar 31 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32993 * 120.00087 * 2 1 4 4 C 1.47106 * 119.99921 * 172.95577 * 3 2 1 5 5 O 1.21610 * 119.99872 * 354.03697 * 4 3 2 6 6 N 1.34771 * 120.00019 * 174.03650 * 4 3 2 7 7 C 1.46497 * 120.00318 * 180.02562 * 6 4 3 8 8 H 1.09009 * 109.47217 * 34.99735 * 7 6 4 9 9 C 1.52994 * 109.47553 * 154.99879 * 7 6 4 10 10 N 1.46501 * 109.46919 * 304.99839 * 9 7 6 11 11 C 1.36940 * 120.00005 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99751 * 359.97438 * 11 10 9 13 13 C 1.38809 * 120.00244 * 180.02562 * 11 10 9 14 14 N 1.31618 * 119.99841 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99965 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47158 * 60.00161 * 15 13 11 17 17 H 1.48501 * 109.46806 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47101 * 299.99802 * 15 13 11 19 19 C 1.52998 * 109.47347 * 275.00188 * 7 6 4 20 20 C 1.53002 * 117.50685 * 128.74192 * 19 7 6 21 21 C 1.53002 * 117.50043 * 60.07809 * 19 7 6 22 22 C 1.50701 * 119.99782 * 179.97438 * 2 1 3 23 23 C 1.52995 * 117.49809 * 1.64984 * 22 2 1 24 24 C 1.53004 * 60.00252 * 252.51015 * 23 22 2 25 25 H 1.09000 * 109.46744 * 90.00003 * 1 2 3 26 26 H 1.08989 * 109.47338 * 210.00087 * 1 2 3 27 27 H 1.09005 * 109.47164 * 330.00399 * 1 2 3 28 28 H 1.07999 * 120.00216 * 352.95525 * 3 2 1 29 29 H 0.97006 * 120.00550 * 359.97438 * 6 4 3 30 30 H 1.08997 * 109.47471 * 65.00210 * 9 7 6 31 31 H 1.09010 * 109.47272 * 185.00396 * 9 7 6 32 32 H 0.96998 * 120.00098 * 0.02562 * 10 9 7 33 33 H 0.97003 * 120.00109 * 179.97438 * 14 13 11 34 34 H 1.09001 * 115.54823 * 274.41439 * 19 7 6 35 35 H 1.09008 * 117.49014 * 0.02562 * 20 19 7 36 36 H 1.08996 * 117.50209 * 145.01894 * 20 19 7 37 37 H 1.08998 * 117.50275 * 214.98446 * 21 19 7 38 38 H 1.09005 * 117.50031 * 359.97438 * 21 19 7 39 39 H 1.08998 * 115.54813 * 147.35652 * 22 2 1 40 40 H 1.08999 * 117.50190 * 359.97438 * 23 22 2 41 41 H 1.09001 * 117.49608 * 145.02136 * 23 22 2 42 42 H 1.09000 * 117.49722 * 252.51493 * 24 23 22 43 43 H 1.08997 * 117.51961 * 107.48008 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6347 1.1565 0.1562 5 8 4.2242 0.1197 0.3936 6 7 4.3215 2.3099 0.0363 7 6 5.7782 2.3146 0.1913 8 1 6.1894 1.3884 -0.2104 9 6 6.3680 3.5055 -0.5669 10 7 5.9294 3.4605 -1.9640 11 6 6.3344 4.4317 -2.8403 12 1 6.9768 5.2310 -2.5014 13 6 5.9185 4.3895 -4.1639 14 7 5.1352 3.4157 -4.5768 15 14 6.4716 5.7140 -5.3595 16 1 7.9538 5.7123 -5.4491 17 1 5.8948 5.4422 -6.7007 18 1 6.0062 7.0399 -4.8794 19 6 6.1328 2.4286 1.6752 20 6 7.1174 1.4065 2.2470 21 6 5.6322 1.3240 2.6081 22 6 2.2605 -1.3051 0.0006 23 6 1.4388 -2.5952 -0.0379 24 6 2.1539 -2.1818 1.2500 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8901 0.5138 28 1 1.6381 2.0835 -0.1147 29 1 3.8513 3.1369 -0.1535 30 1 6.0263 4.4334 -0.1084 31 1 7.4563 3.4593 -0.5261 32 1 5.3516 2.7433 -2.2681 33 1 4.8442 3.3863 -5.5017 34 1 6.1731 3.4428 2.0724 35 1 7.5129 0.6530 1.5656 36 1 7.8052 1.7482 3.0204 37 1 5.3434 1.6115 3.6191 38 1 5.0497 0.5163 2.1647 39 1 3.2126 -1.2985 -0.5299 40 1 0.3533 -2.5000 -0.0632 41 1 1.8504 -3.4375 -0.5939 42 1 3.0359 -2.7522 1.5413 43 1 1.5392 -1.8144 2.0717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754434532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:28 Heat of formation + Delta-G solvation = 40.648472 kcal Electronic energy + Delta-G solvation = -21940.307308 eV Core-core repulsion = 18794.858800 eV Total energy + Delta-G solvation = -3145.448508 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.85765 -38.08647 -36.73659 -34.93788 -33.36073 -33.17671 -31.05984 -28.59594 -27.38747 -24.10165 -23.28223 -22.29053 -22.08588 -21.47223 -20.87879 -19.91093 -18.41181 -17.24203 -16.72182 -16.19415 -15.27079 -15.16107 -14.91813 -14.36244 -14.20054 -13.68604 -13.36743 -13.13660 -13.06574 -12.85816 -12.77937 -12.34036 -12.00073 -11.65538 -11.46608 -11.25301 -11.18389 -10.97504 -10.88458 -10.78454 -10.67231 -10.29652 -10.19691 -10.03012 -9.88610 -9.64753 -9.18669 -8.90301 -8.76025 -8.40420 -6.94900 -5.76971 -3.06791 1.51253 3.43341 3.47843 3.48915 3.56577 3.60523 4.05764 4.23733 4.56956 4.61837 4.87357 4.95237 5.06490 5.13776 5.18497 5.23883 5.34341 5.43932 5.47317 5.53039 5.56212 5.64349 5.64813 5.78747 5.84166 5.89798 5.92899 5.97083 6.13692 6.14971 6.27492 6.35611 6.42170 6.47430 6.55067 6.60464 6.67117 6.77253 7.06406 7.68296 8.04650 8.40915 8.71700 9.52583 10.08876 10.44566 11.45292 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.004861 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.729588 B = 5759.290061 C = 7139.370749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.014 4.014 3 C -0.215 4.215 4 C 0.549 3.451 5 O -0.544 6.544 6 N -0.704 5.704 7 C 0.170 3.830 8 H 0.086 0.914 9 C 0.148 3.852 10 N -0.731 5.731 11 C -0.243 4.243 12 H 0.070 0.930 13 C -0.011 4.011 14 N -0.931 5.931 15 Si 0.907 3.093 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.286 1.286 19 C -0.162 4.162 20 C -0.173 4.173 21 C -0.184 4.184 22 C -0.110 4.110 23 C -0.193 4.193 24 C -0.157 4.157 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.126 0.874 29 H 0.403 0.597 30 H 0.024 0.976 31 H 0.034 0.966 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.728 -7.319 13.718 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.016 4.016 3 C -0.236 4.236 4 C 0.339 3.661 5 O -0.425 6.425 6 N -0.353 5.353 7 C 0.065 3.935 8 H 0.104 0.896 9 C 0.020 3.980 10 N -0.376 5.376 11 C -0.374 4.374 12 H 0.088 0.912 13 C -0.208 4.208 14 N -0.579 5.579 15 Si 0.738 3.262 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.213 1.213 19 C -0.182 4.182 20 C -0.210 4.210 21 C -0.221 4.221 22 C -0.128 4.128 23 C -0.230 4.230 24 C -0.194 4.194 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.144 0.856 29 H 0.238 0.762 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.153 0.847 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.216 -7.877 13.790 17.444 hybrid contribution -0.057 1.149 -0.940 1.485 sum -7.273 -6.728 12.850 16.226 Atomic orbital electron populations 1.20983 0.91500 1.02859 1.02952 1.21704 0.94935 0.93378 0.91555 1.22413 0.93833 0.98598 1.08776 1.18423 0.87621 0.83538 0.76533 1.90632 1.70937 1.31499 1.49481 1.45871 1.07761 1.10444 1.71218 1.20746 0.79968 1.00976 0.91802 0.89556 1.20914 0.97016 0.93775 0.86314 1.42342 1.59895 1.31552 1.03820 1.19175 1.24714 1.03288 0.90239 0.91213 1.24742 1.00273 0.98522 0.97218 1.69662 1.38850 1.33065 1.16371 0.86268 0.78126 0.81233 0.80537 1.21263 1.21701 1.21273 1.22651 1.05143 0.95360 0.95039 1.22886 0.92678 1.02152 1.03296 1.23270 0.97297 1.02360 0.99134 1.21458 1.00612 0.87691 1.03040 1.23121 0.98937 0.99031 1.01888 1.22759 1.02486 1.02877 0.91273 0.90373 0.91103 0.91151 0.85618 0.76230 0.95854 0.94836 0.77958 0.93451 0.88088 0.88824 0.89378 0.90139 0.86245 0.84706 0.88852 0.88821 0.88731 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.49 36.01 0.34 -0.85 16 2 C -0.01 -0.18 5.80 -101.17 -0.59 -0.76 16 3 C -0.22 -3.02 9.62 -37.80 -0.36 -3.38 16 4 C 0.55 9.08 7.01 -12.67 -0.09 8.99 16 5 O -0.54 -9.85 10.33 5.27 0.05 -9.80 16 6 N -0.70 -11.62 4.49 -54.99 -0.25 -11.87 16 7 C 0.17 2.94 2.43 -67.94 -0.17 2.78 16 8 H 0.09 1.70 7.34 -51.92 -0.38 1.32 16 9 C 0.15 2.95 5.80 -4.04 -0.02 2.92 16 10 N -0.73 -18.31 5.43 -59.91 -0.33 -18.64 16 11 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 12 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 13 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 14 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 15 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.16 -2.39 5.36 -90.62 -0.49 -2.87 16 20 C -0.17 -2.36 10.18 -26.69 -0.27 -2.63 16 21 C -0.18 -2.61 9.74 -26.69 -0.26 -2.87 16 22 C -0.11 -1.48 4.35 -91.77 -0.40 -1.88 16 23 C -0.19 -2.06 9.79 -26.73 -0.26 -2.33 16 24 C -0.16 -1.81 10.24 -26.73 -0.27 -2.08 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.58 6.37 -51.94 -0.33 0.25 16 27 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 28 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.40 6.42 8.59 -40.82 -0.35 6.07 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.39 10.34 7.33 -40.82 -0.30 10.04 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 34 H 0.10 1.40 8.11 -51.93 -0.42 0.98 16 35 H 0.09 1.34 8.05 -51.92 -0.42 0.92 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.12 1.95 5.02 -51.93 -0.26 1.69 16 39 H 0.14 2.22 6.23 -51.93 -0.32 1.89 16 40 H 0.09 0.86 6.31 -51.93 -0.33 0.53 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -30.70 350.23 -9.51 -40.20 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -6.88 Total: 17.23 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -3.08 Total: -12.28 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.15 Total: -57.92 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.05 Total: -9.80 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.70 -9.51 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.853 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds