Wall clock time and date at job start Tue Mar 31 2020 00:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32993 * 120.00087 * 2 1 4 4 C 1.47106 * 119.99921 * 172.95577 * 3 2 1 5 5 O 1.21610 * 119.99872 * 354.03697 * 4 3 2 6 6 N 1.34771 * 120.00019 * 174.03650 * 4 3 2 7 7 C 1.46497 * 120.00318 * 180.02562 * 6 4 3 8 8 H 1.09009 * 109.47217 * 34.99735 * 7 6 4 9 9 C 1.52994 * 109.47553 * 154.99879 * 7 6 4 10 10 N 1.46501 * 109.46919 * 304.99839 * 9 7 6 11 11 C 1.36940 * 120.00005 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99751 * 359.97438 * 11 10 9 13 13 C 1.38809 * 120.00244 * 180.02562 * 11 10 9 14 14 N 1.31618 * 119.99841 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99965 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47158 * 60.00161 * 15 13 11 17 17 H 1.48501 * 109.46806 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47101 * 299.99802 * 15 13 11 19 19 C 1.52998 * 109.47347 * 275.00188 * 7 6 4 20 20 C 1.53002 * 117.50685 * 128.74192 * 19 7 6 21 21 C 1.53002 * 117.50043 * 60.07809 * 19 7 6 22 22 C 1.50701 * 119.99782 * 179.97438 * 2 1 3 23 23 C 1.52995 * 117.49809 * 1.64984 * 22 2 1 24 24 C 1.53004 * 60.00252 * 252.51015 * 23 22 2 25 25 H 1.09000 * 109.46744 * 90.00003 * 1 2 3 26 26 H 1.08989 * 109.47338 * 210.00087 * 1 2 3 27 27 H 1.09005 * 109.47164 * 330.00399 * 1 2 3 28 28 H 1.07999 * 120.00216 * 352.95525 * 3 2 1 29 29 H 0.97006 * 120.00550 * 359.97438 * 6 4 3 30 30 H 1.08997 * 109.47471 * 65.00210 * 9 7 6 31 31 H 1.09010 * 109.47272 * 185.00396 * 9 7 6 32 32 H 0.96998 * 120.00098 * 0.02562 * 10 9 7 33 33 H 0.97003 * 120.00109 * 179.97438 * 14 13 11 34 34 H 1.09001 * 115.54823 * 274.41439 * 19 7 6 35 35 H 1.09008 * 117.49014 * 0.02562 * 20 19 7 36 36 H 1.08996 * 117.50209 * 145.01894 * 20 19 7 37 37 H 1.08998 * 117.50275 * 214.98446 * 21 19 7 38 38 H 1.09005 * 117.50031 * 359.97438 * 21 19 7 39 39 H 1.08998 * 115.54813 * 147.35652 * 22 2 1 40 40 H 1.08999 * 117.50190 * 359.97438 * 23 22 2 41 41 H 1.09001 * 117.49608 * 145.02136 * 23 22 2 42 42 H 1.09000 * 117.49722 * 252.51493 * 24 23 22 43 43 H 1.08997 * 117.51961 * 107.48008 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6347 1.1565 0.1562 5 8 4.2242 0.1197 0.3936 6 7 4.3215 2.3099 0.0363 7 6 5.7782 2.3146 0.1913 8 1 6.1894 1.3884 -0.2104 9 6 6.3680 3.5055 -0.5669 10 7 5.9294 3.4605 -1.9640 11 6 6.3344 4.4317 -2.8403 12 1 6.9768 5.2310 -2.5014 13 6 5.9185 4.3895 -4.1639 14 7 5.1352 3.4157 -4.5768 15 14 6.4716 5.7140 -5.3595 16 1 7.9538 5.7123 -5.4491 17 1 5.8948 5.4422 -6.7007 18 1 6.0062 7.0399 -4.8794 19 6 6.1328 2.4286 1.6752 20 6 7.1174 1.4065 2.2470 21 6 5.6322 1.3240 2.6081 22 6 2.2605 -1.3051 0.0006 23 6 1.4388 -2.5952 -0.0379 24 6 2.1539 -2.1818 1.2500 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8901 0.5138 28 1 1.6381 2.0835 -0.1147 29 1 3.8513 3.1369 -0.1535 30 1 6.0263 4.4334 -0.1084 31 1 7.4563 3.4593 -0.5261 32 1 5.3516 2.7433 -2.2681 33 1 4.8442 3.3863 -5.5017 34 1 6.1731 3.4428 2.0724 35 1 7.5129 0.6530 1.5656 36 1 7.8052 1.7482 3.0204 37 1 5.3434 1.6115 3.6191 38 1 5.0497 0.5163 2.1647 39 1 3.2126 -1.2985 -0.5299 40 1 0.3533 -2.5000 -0.0632 41 1 1.8504 -3.4375 -0.5939 42 1 3.0359 -2.7522 1.5413 43 1 1.5392 -1.8144 2.0717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754434532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:27 Heat of formation + Delta-G solvation = 22.560211 kcal Electronic energy + Delta-G solvation = -21941.091674 eV Core-core repulsion = 18794.858800 eV Total energy + Delta-G solvation = -3146.232874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11691 -39.19037 -37.92435 -36.60810 -34.88957 -34.24568 -32.94079 -30.03147 -28.56295 -25.95551 -24.42521 -23.32133 -23.15145 -23.04810 -22.05612 -21.23377 -19.64929 -19.05031 -18.01618 -17.39112 -16.69546 -16.50679 -16.32406 -15.77185 -15.54366 -15.08990 -14.94065 -14.50961 -14.24753 -14.11048 -13.88299 -13.55903 -13.20616 -13.09691 -12.75846 -12.70227 -12.47571 -12.42403 -12.27350 -12.15270 -12.11769 -11.85519 -11.63138 -11.28656 -11.20037 -11.03419 -10.97208 -10.40328 -9.89580 -9.63122 -9.02544 -7.94618 -5.24860 0.44417 1.47780 1.50876 1.56949 2.30343 2.39836 2.56025 3.06530 3.10688 3.39321 3.59838 3.66012 3.89815 3.98725 4.06704 4.12647 4.17377 4.21153 4.29620 4.37572 4.47823 4.49325 4.64737 4.68637 4.75949 4.82104 4.83056 4.90250 4.98391 5.04656 5.09076 5.13272 5.27222 5.28869 5.30072 5.43858 5.48681 5.49446 5.68543 5.71686 6.25568 6.75711 7.32794 7.43951 8.05820 8.30534 9.28341 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.004861 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.729588 B = 5759.290061 C = 7139.370749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.001 3.999 3 C -0.244 4.244 4 C 0.541 3.459 5 O -0.567 6.567 6 N -0.705 5.705 7 C 0.182 3.818 8 H 0.055 0.945 9 C 0.150 3.850 10 N -0.742 5.742 11 C -0.248 4.248 12 H 0.079 0.921 13 C -0.072 4.072 14 N -0.969 5.969 15 Si 0.975 3.025 16 H -0.280 1.280 17 H -0.297 1.297 18 H -0.274 1.274 19 C -0.165 4.165 20 C -0.165 4.165 21 C -0.179 4.179 22 C -0.141 4.141 23 C -0.171 4.171 24 C -0.152 4.152 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.405 0.595 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.374 0.626 33 H 0.251 0.749 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 -6.701 15.035 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.001 4.001 3 C -0.265 4.265 4 C 0.332 3.668 5 O -0.450 6.450 6 N -0.355 5.355 7 C 0.077 3.923 8 H 0.073 0.927 9 C 0.023 3.977 10 N -0.386 5.386 11 C -0.379 4.379 12 H 0.096 0.904 13 C -0.265 4.265 14 N -0.620 5.620 15 Si 0.804 3.196 16 H -0.206 1.206 17 H -0.223 1.223 18 H -0.200 1.200 19 C -0.185 4.185 20 C -0.203 4.203 21 C -0.216 4.216 22 C -0.159 4.159 23 C -0.207 4.207 24 C -0.189 4.189 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.161 0.839 29 H 0.240 0.760 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.206 0.794 33 H 0.059 0.941 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.180 -7.240 15.149 18.677 hybrid contribution 0.280 0.858 -1.305 1.587 sum -7.899 -6.382 13.844 17.169 Atomic orbital electron populations 1.21074 0.88507 1.04534 1.03931 1.22088 0.96882 0.92412 0.88702 1.22473 0.92339 1.00077 1.11607 1.18922 0.88840 0.83020 0.76000 1.90628 1.71691 1.32122 1.50518 1.45858 1.07336 1.10723 1.71534 1.20463 0.80452 0.98160 0.93274 0.92718 1.21030 0.97013 0.95462 0.84154 1.42510 1.59735 1.30683 1.05632 1.19612 1.23890 1.03565 0.90847 0.90353 1.25570 1.00969 1.00872 0.99074 1.69836 1.40632 1.35177 1.16312 0.85196 0.77731 0.78917 0.77795 1.20594 1.22337 1.20033 1.22559 1.06250 0.96539 0.93149 1.22966 0.92830 1.01134 1.03334 1.23193 0.97448 1.01245 0.99689 1.21327 1.00233 0.89609 1.04772 1.23224 0.99941 0.97023 1.00527 1.22802 1.02667 1.01928 0.91516 0.89477 0.89295 0.89652 0.83920 0.75983 0.94342 0.94800 0.79408 0.94071 0.86372 0.90182 0.86710 0.88039 0.88562 0.88627 0.86406 0.88495 0.89419 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 9.49 71.24 0.68 -1.33 16 2 C 0.00 0.03 5.80 -17.62 -0.10 -0.08 16 3 C -0.24 -6.91 9.62 23.43 0.23 -6.68 16 4 C 0.54 18.63 7.01 86.57 0.61 19.24 16 5 O -0.57 -21.76 10.33 -4.06 -0.04 -21.80 16 6 N -0.71 -24.02 4.49 -446.15 -2.01 -26.02 16 7 C 0.18 6.44 2.43 44.99 0.11 6.55 16 8 H 0.05 2.28 7.34 -2.38 -0.02 2.26 16 9 C 0.15 6.00 5.80 86.38 0.50 6.50 16 10 N -0.74 -37.84 5.43 -343.45 -1.87 -39.71 16 11 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 12 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 13 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 14 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 15 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 C -0.17 -4.74 5.36 -10.79 -0.06 -4.80 16 20 C -0.17 -4.35 10.18 30.62 0.31 -4.03 16 21 C -0.18 -4.95 9.74 30.62 0.30 -4.65 16 22 C -0.14 -3.82 4.35 -11.54 -0.05 -3.87 16 23 C -0.17 -3.37 9.79 30.59 0.30 -3.07 16 24 C -0.15 -3.39 10.24 30.60 0.31 -3.07 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.09 1.13 6.37 -2.39 -0.02 1.11 16 27 H 0.08 1.16 8.07 -2.38 -0.02 1.14 16 28 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 29 H 0.41 13.21 8.59 -92.70 -0.80 12.41 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.37 20.74 7.33 -92.71 -0.68 20.06 16 33 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.12 3.02 8.11 -2.39 -0.02 3.00 16 35 H 0.08 2.32 8.05 -2.38 -0.02 2.30 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.10 3.20 5.02 -2.38 -0.01 3.19 16 39 H 0.10 3.38 6.23 -2.39 -0.01 3.36 16 40 H 0.12 1.76 6.31 -2.39 -0.02 1.75 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 42 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -67.47 350.23 2.37 -65.10 By element: Atomic # 1 Polarization: 50.28 SS G_CDS: -0.46 Total: 49.82 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 4.44 Total: -15.92 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -3.59 Total: -125.24 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.04 Total: -21.80 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -67.47 2.37 -65.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.661 kcal (2) G-P(sol) polarization free energy of solvation -67.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds