Wall clock time and date at job start Tue Mar 31 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32864 * 1 3 3 C 1.47122 * 120.00351 * 2 1 4 4 C 1.50700 * 119.99586 * 359.97438 * 3 2 1 5 5 C 1.32864 * 120.00235 * 179.97438 * 3 2 1 6 6 C 1.50704 * 120.00023 * 173.76510 * 5 3 2 7 7 C 1.50696 * 109.47249 * 234.00769 * 6 5 3 8 8 O 1.21282 * 120.00225 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99996 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99579 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.85573 * 334.66844 * 10 9 7 12 12 C 1.53782 * 113.61313 * 105.86892 * 10 9 7 13 13 C 1.54050 * 86.98627 * 89.15674 * 12 10 9 14 14 H 1.08996 * 113.61635 * 270.88823 * 13 12 10 15 15 C 1.53005 * 113.62199 * 139.98006 * 13 12 10 16 16 N 1.46495 * 109.47068 * 87.50307 * 15 13 12 17 17 C 1.36940 * 119.99766 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00187 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99778 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99764 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47425 * 59.99929 * 21 19 17 23 23 H 1.48509 * 109.47086 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47074 * 299.99458 * 21 19 17 25 25 C 1.53782 * 113.61005 * 203.47344 * 10 9 7 26 26 H 1.08002 * 120.00190 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00276 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47378 * 268.42359 * 4 3 2 30 30 H 1.09000 * 109.47558 * 28.43171 * 4 3 2 31 31 H 1.09004 * 109.47250 * 148.42422 * 4 3 2 32 32 H 1.07996 * 120.00205 * 353.77313 * 5 3 2 33 33 H 1.09000 * 109.47092 * 354.00771 * 6 5 3 34 34 H 1.08994 * 109.47210 * 114.00739 * 6 5 3 35 35 H 0.96997 * 119.99878 * 0.02562 * 9 7 6 36 36 H 1.08995 * 113.61442 * 203.65897 * 12 10 9 37 37 H 1.09003 * 113.61607 * 334.56623 * 12 10 9 38 38 H 1.08998 * 109.47086 * 207.50758 * 15 13 12 39 39 H 1.09002 * 109.46544 * 327.50705 * 15 13 12 40 40 H 0.96998 * 120.00110 * 0.02562 * 16 15 13 41 41 H 0.97000 * 120.00115 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.61894 * 25.43753 * 25 10 9 43 43 H 1.09006 * 113.61432 * 156.33892 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1466 2.5714 -0.1412 7 6 5.1213 2.4638 -1.2855 8 8 5.1963 1.4350 -1.9234 9 7 5.9089 3.5111 -1.6006 10 6 6.8569 3.4061 -2.7126 11 1 7.1583 2.3787 -2.9164 12 6 6.4222 4.1811 -3.9677 13 6 7.1667 5.3938 -3.3775 14 1 6.5462 6.0152 -2.7319 15 6 7.9407 6.2044 -4.4191 16 7 7.0566 7.2127 -5.0087 17 6 7.5326 8.0614 -5.9722 18 1 8.5597 7.9871 -6.2977 19 6 6.6950 9.0172 -6.5306 20 7 5.4431 9.1073 -6.1343 21 14 7.3442 10.1744 -7.8454 22 1 7.8149 9.3846 -9.0116 23 1 6.2596 11.0931 -8.2757 24 1 8.4739 10.9653 -7.2947 25 6 8.0379 4.3856 -2.6097 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5399 0.9353 -0.0004 28 1 1.8687 -0.9353 0.0004 29 1 1.1540 2.9078 -1.0280 30 1 0.3463 2.4421 0.4883 31 1 1.8872 3.3317 0.5376 32 1 3.9329 0.3443 0.1024 33 1 3.4432 3.3805 -0.3380 34 1 4.6900 2.7785 0.7806 35 1 5.8487 4.3339 -1.0906 36 1 6.8649 3.8033 -4.8893 37 1 5.3440 4.3228 -4.0419 38 1 8.7864 6.6980 -3.9402 39 1 8.3043 5.5379 -5.2012 40 1 6.1340 7.2791 -4.7167 41 1 4.8579 9.7754 -6.5242 42 1 8.2633 4.6922 -1.5883 43 1 8.9216 4.0636 -3.1607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755476625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:33 Heat of formation + Delta-G solvation = 19.453783 kcal Electronic energy + Delta-G solvation = -20647.762429 eV Core-core repulsion = 17501.394851 eV Total energy + Delta-G solvation = -3146.367579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.23478 -38.50383 -37.00346 -34.51999 -33.22220 -32.55434 -30.84025 -29.05198 -27.19542 -26.37924 -25.49061 -23.43233 -21.95282 -21.33130 -20.30626 -19.06735 -18.06973 -17.36322 -17.00907 -16.30203 -15.89604 -15.02212 -14.92390 -14.51767 -14.36219 -13.95467 -13.80698 -13.45373 -13.35246 -13.13751 -12.79921 -12.55516 -12.34656 -12.13042 -11.84798 -11.73969 -11.56893 -11.09872 -11.02351 -10.80746 -10.73183 -10.47589 -10.35256 -10.09507 -9.91458 -9.81648 -9.59623 -8.99017 -8.82615 -8.43935 -6.89163 -5.74825 -3.02960 1.10581 2.57288 2.75113 3.21053 3.44990 3.49112 3.50285 4.40996 4.59081 4.61363 4.66038 4.72961 4.83279 4.99053 5.06187 5.07600 5.13780 5.17388 5.19315 5.36867 5.47909 5.59284 5.62043 5.74485 5.76252 5.87738 5.94942 6.02857 6.11367 6.13407 6.24816 6.26068 6.33417 6.43514 6.45634 6.65486 6.70980 6.79770 6.95221 7.46655 7.70908 8.18631 8.44554 9.55339 10.14674 10.49107 11.48162 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.002751 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.707710 B =10175.674162 C =11058.937677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 C -0.109 4.109 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.119 4.119 7 C 0.519 3.481 8 O -0.539 6.539 9 N -0.711 5.711 10 C 0.115 3.885 11 H 0.097 0.903 12 C -0.139 4.139 13 C -0.113 4.113 14 H 0.087 0.913 15 C 0.162 3.838 16 N -0.732 5.732 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.138 4.138 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.401 0.599 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.069 0.931 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 -15.425 16.482 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.133 4.133 3 C -0.109 4.109 4 C -0.182 4.182 5 C -0.137 4.137 6 C -0.158 4.158 7 C 0.305 3.695 8 O -0.416 6.416 9 N -0.362 5.362 10 C 0.010 3.990 11 H 0.115 0.885 12 C -0.177 4.177 13 C -0.131 4.131 14 H 0.106 0.894 15 C 0.034 3.966 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.176 4.176 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.613 -16.084 15.895 23.078 hybrid contribution -0.005 1.147 -0.493 1.249 sum -4.617 -14.936 15.402 21.946 Atomic orbital electron populations 1.24410 0.95714 1.02049 1.00410 1.21853 0.95306 0.96054 1.00076 1.20570 0.93922 0.94424 1.01996 1.20922 1.00228 0.94459 1.02565 1.22743 0.93855 0.97689 0.99447 1.20819 0.98257 0.98722 0.98037 1.20500 0.80808 0.83273 0.84907 1.90702 1.68214 1.29617 1.53021 1.45719 1.39725 1.16409 1.34327 1.21930 0.89841 0.99977 0.87227 0.88479 1.23454 1.01168 0.96082 0.97046 1.22801 0.97439 0.95074 0.97817 0.89447 1.20640 0.92845 0.90491 0.92579 1.42340 1.11217 1.37683 1.46335 1.19205 0.95661 1.09371 1.12792 0.91291 1.24741 0.95890 0.99938 1.00552 1.69649 1.04989 1.37612 1.46113 0.86263 0.77477 0.80689 0.81735 1.21288 1.21698 1.21295 1.23303 0.97062 0.96384 1.00872 0.88189 0.88021 0.86842 0.91162 0.91441 0.91248 0.86407 0.87740 0.87888 0.76412 0.89196 0.91370 0.96424 0.96227 0.78349 0.93512 0.91278 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 14.11 28.88 0.41 -1.05 16 2 C -0.11 -1.03 9.83 -37.83 -0.37 -1.40 16 3 C -0.11 -1.03 5.98 -102.87 -0.62 -1.64 16 4 C -0.13 -0.98 8.56 36.01 0.31 -0.68 16 5 C -0.12 -1.17 8.45 -36.16 -0.31 -1.48 16 6 C -0.12 -1.03 5.76 -29.03 -0.17 -1.19 16 7 C 0.52 6.33 7.82 -10.99 -0.09 6.24 16 8 O -0.54 -8.81 15.65 5.56 0.09 -8.72 16 9 N -0.71 -7.88 5.26 -53.02 -0.28 -8.16 16 10 C 0.12 1.47 4.29 -67.12 -0.29 1.18 16 11 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 12 C -0.14 -2.10 7.45 -25.78 -0.19 -2.29 16 13 C -0.11 -1.73 3.65 -89.66 -0.33 -2.06 16 14 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.16 3.23 6.10 -4.04 -0.02 3.21 16 16 N -0.73 -18.69 5.60 -59.91 -0.34 -19.03 16 17 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 21 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C -0.14 -1.65 7.38 -25.92 -0.19 -1.84 16 26 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 27 H 0.10 0.71 6.13 -52.49 -0.32 0.39 16 28 H 0.11 0.93 8.06 -52.48 -0.42 0.51 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.46 6.36 -51.93 -0.33 0.13 16 31 H 0.07 0.46 6.52 -51.93 -0.34 0.12 16 32 H 0.12 1.21 8.05 -52.49 -0.42 0.79 16 33 H 0.10 0.78 5.74 -51.93 -0.30 0.48 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.40 3.50 8.70 -40.82 -0.36 3.14 16 36 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 40 H 0.38 10.27 7.67 -40.82 -0.31 9.95 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -33.59 356.96 -8.48 -42.07 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.94 Total: 9.13 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -2.10 Total: -10.47 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.11 Total: -54.97 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.59 -8.48 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755476625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.522 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds