Wall clock time and date at job start Tue Mar 31 2020 00:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32864 * 1 3 3 C 1.47122 * 120.00351 * 2 1 4 4 C 1.50700 * 119.99586 * 359.97438 * 3 2 1 5 5 C 1.32864 * 120.00235 * 179.97438 * 3 2 1 6 6 C 1.50704 * 120.00023 * 173.76510 * 5 3 2 7 7 C 1.50696 * 109.47249 * 234.00769 * 6 5 3 8 8 O 1.21282 * 120.00225 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99996 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99579 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.85573 * 334.66844 * 10 9 7 12 12 C 1.53782 * 113.61313 * 105.86892 * 10 9 7 13 13 C 1.54050 * 86.98627 * 89.15674 * 12 10 9 14 14 H 1.08996 * 113.61635 * 270.88823 * 13 12 10 15 15 C 1.53005 * 113.62199 * 139.98006 * 13 12 10 16 16 N 1.46495 * 109.47068 * 87.50307 * 15 13 12 17 17 C 1.36940 * 119.99766 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00187 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99778 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99764 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47425 * 59.99929 * 21 19 17 23 23 H 1.48509 * 109.47086 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47074 * 299.99458 * 21 19 17 25 25 C 1.53782 * 113.61005 * 203.47344 * 10 9 7 26 26 H 1.08002 * 120.00190 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00276 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47378 * 268.42359 * 4 3 2 30 30 H 1.09000 * 109.47558 * 28.43171 * 4 3 2 31 31 H 1.09004 * 109.47250 * 148.42422 * 4 3 2 32 32 H 1.07996 * 120.00205 * 353.77313 * 5 3 2 33 33 H 1.09000 * 109.47092 * 354.00771 * 6 5 3 34 34 H 1.08994 * 109.47210 * 114.00739 * 6 5 3 35 35 H 0.96997 * 119.99878 * 0.02562 * 9 7 6 36 36 H 1.08995 * 113.61442 * 203.65897 * 12 10 9 37 37 H 1.09003 * 113.61607 * 334.56623 * 12 10 9 38 38 H 1.08998 * 109.47086 * 207.50758 * 15 13 12 39 39 H 1.09002 * 109.46544 * 327.50705 * 15 13 12 40 40 H 0.96998 * 120.00110 * 0.02562 * 16 15 13 41 41 H 0.97000 * 120.00115 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.61894 * 25.43753 * 25 10 9 43 43 H 1.09006 * 113.61432 * 156.33892 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1466 2.5714 -0.1412 7 6 5.1213 2.4638 -1.2855 8 8 5.1963 1.4350 -1.9234 9 7 5.9089 3.5111 -1.6006 10 6 6.8569 3.4061 -2.7126 11 1 7.1583 2.3787 -2.9164 12 6 6.4222 4.1811 -3.9677 13 6 7.1667 5.3938 -3.3775 14 1 6.5462 6.0152 -2.7319 15 6 7.9407 6.2044 -4.4191 16 7 7.0566 7.2127 -5.0087 17 6 7.5326 8.0614 -5.9722 18 1 8.5597 7.9871 -6.2977 19 6 6.6950 9.0172 -6.5306 20 7 5.4431 9.1073 -6.1343 21 14 7.3442 10.1744 -7.8454 22 1 7.8149 9.3846 -9.0116 23 1 6.2596 11.0931 -8.2757 24 1 8.4739 10.9653 -7.2947 25 6 8.0379 4.3856 -2.6097 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5399 0.9353 -0.0004 28 1 1.8687 -0.9353 0.0004 29 1 1.1540 2.9078 -1.0280 30 1 0.3463 2.4421 0.4883 31 1 1.8872 3.3317 0.5376 32 1 3.9329 0.3443 0.1024 33 1 3.4432 3.3805 -0.3380 34 1 4.6900 2.7785 0.7806 35 1 5.8487 4.3339 -1.0906 36 1 6.8649 3.8033 -4.8893 37 1 5.3440 4.3228 -4.0419 38 1 8.7864 6.6980 -3.9402 39 1 8.3043 5.5379 -5.2012 40 1 6.1340 7.2791 -4.7167 41 1 4.8579 9.7754 -6.5242 42 1 8.2633 4.6922 -1.5883 43 1 8.9216 4.0636 -3.1607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755476625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:32 Heat of formation + Delta-G solvation = -2.036601 kcal Electronic energy + Delta-G solvation = -20648.694322 eV Core-core repulsion = 17501.394851 eV Total energy + Delta-G solvation = -3147.299472 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27433 -39.59464 -37.74423 -36.32645 -34.44102 -33.38515 -32.68730 -29.80037 -28.50159 -27.40546 -26.62497 -25.20585 -23.16931 -22.50975 -21.10792 -20.29038 -19.06664 -18.75032 -18.20733 -17.16436 -16.86482 -16.68280 -15.96532 -15.77971 -15.67810 -15.10771 -15.05210 -14.75333 -14.48037 -14.17597 -13.86575 -13.67352 -13.38435 -13.23512 -13.10349 -12.88635 -12.66531 -12.52040 -12.31632 -12.22837 -11.92297 -11.76089 -11.72351 -11.39080 -11.34825 -11.13947 -10.92210 -10.84020 -10.01583 -9.11591 -8.97748 -7.94914 -5.23185 0.42913 1.46834 1.50066 1.56129 1.63482 2.01997 2.36457 2.56328 3.37793 3.60184 3.61011 3.73604 3.87823 3.95076 3.95671 4.02024 4.33943 4.34355 4.43163 4.46234 4.57252 4.60370 4.76133 4.79641 4.85123 4.87864 4.92994 4.93092 4.99411 5.00375 5.13360 5.16043 5.28429 5.38485 5.48145 5.49443 5.59473 5.70184 5.79170 6.04508 6.27944 6.58686 7.28025 7.33787 8.11895 8.34336 9.28538 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.002751 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.707710 B =10175.674162 C =11058.937677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C -0.112 4.112 4 C -0.127 4.127 5 C -0.139 4.139 6 C -0.109 4.109 7 C 0.515 3.485 8 O -0.586 6.586 9 N -0.702 5.702 10 C 0.125 3.875 11 H 0.090 0.910 12 C -0.145 4.145 13 C -0.109 4.109 14 H 0.088 0.912 15 C 0.159 3.841 16 N -0.745 5.745 17 C -0.247 4.247 18 H 0.074 0.926 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.276 1.276 25 C -0.115 4.115 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.416 0.584 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.023 0.977 39 H 0.018 0.982 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.094 0.906 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 -15.150 17.669 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.112 4.112 4 C -0.183 4.183 5 C -0.157 4.157 6 C -0.148 4.148 7 C 0.304 3.696 8 O -0.466 6.466 9 N -0.353 5.353 10 C 0.019 3.981 11 H 0.108 0.892 12 C -0.184 4.184 13 C -0.128 4.128 14 H 0.106 0.894 15 C 0.033 3.967 16 N -0.388 5.388 17 C -0.379 4.379 18 H 0.092 0.908 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.803 3.197 22 H -0.206 1.206 23 H -0.221 1.221 24 H -0.202 1.202 25 C -0.153 4.153 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.152 0.848 35 H 0.253 0.747 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.113 0.887 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.115 -15.808 17.114 23.658 hybrid contribution -0.180 0.985 -0.860 1.320 sum -4.295 -14.822 16.254 22.413 Atomic orbital electron populations 1.24641 0.95328 1.03140 0.98176 1.21999 0.96015 0.96126 1.01905 1.20828 0.94052 0.95303 1.01019 1.20980 1.00889 0.93963 1.02492 1.22772 0.94200 0.97892 1.00843 1.20826 0.97727 0.98531 0.97696 1.21160 0.80786 0.82529 0.85156 1.90683 1.69649 1.31464 1.54817 1.45662 1.39056 1.16919 1.33696 1.21730 0.90297 0.99460 0.86585 0.89230 1.23467 0.99929 0.96852 0.98120 1.22724 0.98048 0.94828 0.97190 0.89374 1.20835 0.92757 0.89700 0.93437 1.42573 1.11469 1.38520 1.46195 1.19631 0.95900 1.09460 1.12921 0.90761 1.25583 0.96253 1.01986 1.03148 1.69807 1.06185 1.38464 1.47626 0.85207 0.76870 0.78528 0.79135 1.20552 1.22097 1.20209 1.23208 0.96461 0.93867 1.01810 0.86804 0.87241 0.86978 0.91809 0.90383 0.89762 0.87700 0.86227 0.84845 0.74719 0.90040 0.93185 0.95948 0.96407 0.79533 0.94010 0.88707 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 14.11 66.64 0.94 -1.54 16 2 C -0.14 -2.49 9.83 23.43 0.23 -2.26 16 3 C -0.11 -2.03 5.98 -18.71 -0.11 -2.14 16 4 C -0.13 -1.79 8.56 71.24 0.61 -1.18 16 5 C -0.14 -2.66 8.45 24.51 0.21 -2.46 16 6 C -0.11 -1.69 5.76 29.10 0.17 -1.52 16 7 C 0.52 12.08 7.82 87.66 0.69 12.77 16 8 O -0.59 -19.32 15.65 -3.03 -0.05 -19.36 16 9 N -0.70 -14.39 5.26 -440.03 -2.32 -16.70 16 10 C 0.13 3.03 4.29 45.52 0.20 3.23 16 11 H 0.09 2.38 7.50 -2.39 -0.02 2.36 16 12 C -0.14 -4.36 7.45 31.21 0.23 -4.12 16 13 C -0.11 -3.23 3.65 -10.17 -0.04 -3.27 16 14 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 15 C 0.16 6.22 6.10 86.38 0.53 6.75 16 16 N -0.75 -38.16 5.60 -343.46 -1.92 -40.09 16 17 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 18 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 19 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 20 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 21 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 25 C -0.12 -2.47 7.38 31.12 0.23 -2.24 16 26 H 0.11 1.24 8.06 -2.91 -0.02 1.22 16 27 H 0.11 1.34 6.13 -2.91 -0.02 1.32 16 28 H 0.11 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 0.92 6.36 -2.39 -0.02 0.90 16 31 H 0.08 0.92 6.52 -2.38 -0.02 0.90 16 32 H 0.10 2.23 8.05 -2.91 -0.02 2.21 16 33 H 0.12 1.51 5.74 -2.39 -0.01 1.50 16 34 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.42 6.18 8.70 -92.71 -0.81 5.37 16 36 H 0.08 2.56 7.90 -2.39 -0.02 2.54 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.02 0.71 7.85 -2.39 -0.02 0.70 16 40 H 0.37 20.29 7.67 -92.71 -0.71 19.58 16 41 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.10 2.09 8.10 -2.38 -0.02 2.07 16 Total: -1.00 -72.89 356.96 2.69 -70.19 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.51 Total: 32.23 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.18 Total: -15.18 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -3.96 Total: -116.33 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.89 2.69 -70.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755476625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.158 kcal (2) G-P(sol) polarization free energy of solvation -72.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds