Wall clock time and date at job start Mon Mar 30 2020 23:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99781 * 2 1 4 4 C 1.53003 * 109.47100 * 124.99775 * 3 2 1 5 5 C 1.50701 * 109.47071 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99913 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99935 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00294 * 180.02562 * 7 5 4 9 9 C 1.53579 * 112.24509 * 62.34604 * 8 7 5 10 10 C 1.54224 * 106.67544 * 121.76008 * 9 8 7 11 11 C 1.54759 * 104.15350 * 24.94436 * 10 9 8 12 12 C 1.55160 * 112.18904 * 183.38368 * 8 7 5 13 13 H 1.08999 * 112.04263 * 337.23089 * 12 8 7 14 14 N 1.46986 * 107.06736 * 100.16237 * 12 8 7 15 15 C 1.36929 * 125.57872 * 177.86674 * 14 12 8 16 16 H 1.08004 * 120.00341 * 359.97438 * 15 14 12 17 17 C 1.38815 * 120.00031 * 179.71466 * 15 14 12 18 18 N 1.31617 * 119.99916 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46986 * 90.00489 * 19 17 15 21 21 H 1.48496 * 109.47029 * 210.00506 * 19 17 15 22 22 H 1.48499 * 109.47352 * 330.00336 * 19 17 15 23 23 C 1.47366 * 108.83964 * 357.60359 * 14 12 8 24 24 C 1.54872 * 104.82404 * 24.94983 * 23 14 12 25 25 H 1.07995 * 120.00634 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99394 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00634 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46741 * 4.99916 * 3 2 1 29 29 H 1.08992 * 109.47282 * 245.00144 * 3 2 1 30 30 H 1.08994 * 109.47263 * 60.00061 * 4 3 2 31 31 H 1.09001 * 109.47116 * 300.00151 * 4 3 2 32 32 H 0.97001 * 120.00515 * 359.97438 * 7 5 4 33 33 H 1.09003 * 110.02202 * 241.06870 * 9 8 7 34 34 H 1.09003 * 110.02002 * 2.41560 * 9 8 7 35 35 H 1.09002 * 110.49183 * 143.60431 * 10 9 8 36 36 H 1.08993 * 110.49813 * 266.13928 * 10 9 8 37 37 H 1.09004 * 110.67206 * 80.62237 * 11 10 9 38 38 H 1.09006 * 110.66617 * 203.58705 * 11 10 9 39 39 H 0.97000 * 120.00284 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.36987 * 143.78501 * 23 14 12 41 41 H 1.09002 * 110.36796 * 266.11474 * 23 14 12 42 42 H 1.08998 * 110.96695 * 81.05080 * 24 23 14 43 43 H 1.09001 * 110.96393 * 204.81021 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7880 2.6386 1.1820 6 8 3.5695 3.4649 0.3216 7 7 4.7049 2.8873 2.1379 8 6 5.4366 4.1565 2.1387 9 6 4.5056 5.3642 2.3218 10 6 4.9894 6.1087 3.5828 11 6 6.4837 5.7234 3.6998 12 6 6.5026 4.2177 3.2644 13 1 6.2767 3.5301 4.0794 14 7 7.8021 3.9220 2.6446 15 6 9.0098 3.9168 3.2899 16 1 9.0596 4.1439 4.3446 17 6 10.1696 3.6142 2.5896 18 7 10.1084 3.3328 1.3053 19 14 11.8170 3.6064 3.4701 20 1 12.0841 2.2484 4.0084 21 1 12.8907 3.9801 2.5147 22 1 11.7860 4.5844 4.5872 23 6 7.5917 3.6259 1.2164 24 6 6.2745 4.3537 0.8506 25 1 -0.5401 0.9352 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3584 2.1316 0.0896 29 1 2.6212 1.4027 -0.9313 30 1 3.7399 0.5067 1.0922 31 1 2.4772 1.2357 2.1130 32 1 4.8800 2.2263 2.8259 33 1 4.5699 6.0200 1.4535 34 1 3.4784 5.0261 2.4585 35 1 4.8820 7.1858 3.4547 36 1 4.4368 5.7726 4.4601 37 1 7.0911 6.3291 3.0271 38 1 6.8289 5.8294 4.7283 39 1 10.9188 3.1218 0.8159 40 1 8.4182 4.0159 0.6223 41 1 7.4868 2.5518 1.0631 42 1 6.4536 5.4118 0.6598 43 1 5.7922 3.8807 -0.0048 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755697113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:07 Heat of formation + Delta-G solvation = -0.927351 kcal Electronic energy + Delta-G solvation = -22534.723527 eV Core-core repulsion = 19387.472156 eV Total energy + Delta-G solvation = -3147.251371 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14118 -38.19211 -35.41200 -34.23585 -33.33014 -31.50490 -30.77693 -29.50133 -26.68036 -26.17918 -24.19230 -23.80220 -21.04642 -19.96134 -19.90432 -19.37938 -18.74091 -16.99941 -16.68842 -15.89237 -15.58193 -14.96098 -14.74411 -14.28507 -14.09019 -13.58756 -13.37892 -13.17882 -12.84748 -12.53367 -12.22519 -12.10742 -11.75191 -11.64809 -11.19756 -11.12272 -11.06217 -10.96350 -10.83156 -10.65818 -10.51150 -10.13733 -10.04969 -9.94375 -9.73406 -9.62260 -9.53035 -9.20272 -8.65437 -8.49021 -6.85021 -5.64462 -3.07743 2.11112 2.95257 3.38739 3.43855 3.46135 3.51615 4.47291 4.70748 4.85000 4.95341 5.05339 5.16411 5.21819 5.29499 5.35598 5.52157 5.58161 5.66268 5.70041 5.85265 5.88319 5.89188 6.01834 6.08161 6.09761 6.16950 6.30929 6.35434 6.43850 6.47661 6.56088 6.62237 6.62729 6.80187 6.82116 7.01807 7.16899 7.55628 7.64881 7.85629 7.91573 8.37198 8.58214 9.21613 9.82705 10.47046 11.37947 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.004504 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.204356 B = 6214.640582 C = 6967.929485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.511 3.489 6 O -0.541 6.541 7 N -0.707 5.707 8 C 0.159 3.841 9 C -0.109 4.109 10 C -0.124 4.124 11 C -0.129 4.129 12 C 0.161 3.839 13 H 0.048 0.952 14 N -0.595 5.595 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.153 3.847 24 C -0.142 4.142 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.398 0.602 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.251 0.749 40 H 0.107 0.893 41 H 0.008 0.992 42 H 0.066 0.934 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.285 -2.933 1.394 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.116 4.116 4 C -0.177 4.177 5 C 0.297 3.703 6 O -0.418 6.418 7 N -0.357 5.357 8 C 0.073 3.927 9 C -0.148 4.148 10 C -0.163 4.163 11 C -0.169 4.169 12 C 0.053 3.947 13 H 0.066 0.934 14 N -0.319 5.319 15 C -0.349 4.349 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.568 5.568 19 Si 0.744 3.256 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.028 3.972 24 C -0.181 4.181 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.125 0.875 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.178 -2.383 0.711 15.380 hybrid contribution 0.958 -0.546 0.838 1.385 sum -14.219 -2.929 1.549 14.600 Atomic orbital electron populations 1.23848 0.95987 1.01725 1.01953 1.23031 0.96077 0.98571 0.99192 1.20492 0.97763 0.95062 0.98295 1.21627 0.99019 0.96316 1.00770 1.20566 0.79775 0.88686 0.81270 1.90674 1.65979 1.48139 1.37011 1.45966 1.39836 1.19683 1.30225 1.21672 0.90594 0.82386 0.98041 1.22254 0.98166 0.96242 0.98173 1.22348 0.97310 0.99322 0.97284 1.23249 0.94372 0.98212 1.01069 1.22169 0.86139 0.93898 0.92510 0.93421 1.44522 1.00490 1.81199 1.05711 1.19037 0.82775 1.39959 0.93106 0.90528 1.24786 0.97856 1.01921 0.96043 1.69808 1.26571 1.53668 1.06799 0.86098 0.83644 0.77621 0.78274 1.21731 1.21711 1.20713 1.21970 0.94090 0.95353 0.85787 1.23325 0.97825 1.01211 0.95772 0.88595 0.88669 0.87359 0.90832 0.90112 0.88897 0.89207 0.76763 0.91273 0.92461 0.92314 0.92404 0.90779 0.92497 0.93768 0.87502 0.97396 0.91541 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.69 14.32 29.01 0.42 -1.27 16 2 C -0.15 -1.39 9.52 -36.02 -0.34 -1.74 16 3 C -0.08 -0.86 4.95 -27.88 -0.14 -1.00 16 4 C -0.14 -1.51 5.68 -27.88 -0.16 -1.66 16 5 C 0.51 7.73 7.03 -10.99 -0.08 7.65 16 6 O -0.54 -9.92 13.80 5.56 0.08 -9.84 16 7 N -0.71 -10.99 5.22 -45.35 -0.24 -11.23 16 8 C 0.16 2.87 0.74 -129.36 -0.10 2.77 16 9 C -0.11 -1.79 5.30 -25.79 -0.14 -1.93 16 10 C -0.12 -1.87 6.84 -25.16 -0.17 -2.04 16 11 C -0.13 -2.33 6.30 -23.78 -0.15 -2.48 16 12 C 0.16 3.20 3.78 -64.50 -0.24 2.96 16 13 H 0.05 0.93 7.95 -51.93 -0.41 0.51 16 14 N -0.60 -14.62 3.04 -159.90 -0.49 -15.11 16 15 C -0.22 -5.93 10.04 -15.06 -0.15 -6.08 16 16 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -26.59 10.07 55.49 0.56 -26.04 16 19 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.15 3.74 5.90 -2.58 -0.02 3.73 16 24 C -0.14 -2.95 5.71 -24.73 -0.14 -3.09 16 25 H 0.10 0.80 7.84 -52.49 -0.41 0.39 16 26 H 0.09 0.68 8.06 -52.48 -0.42 0.26 16 27 H 0.11 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 29 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.40 5.43 8.47 -40.82 -0.35 5.08 16 33 H 0.07 1.18 7.38 -51.93 -0.38 0.80 16 34 H 0.06 0.91 7.61 -51.93 -0.39 0.52 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.49 8.11 -51.93 -0.42 1.07 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.11 2.98 5.82 -51.93 -0.30 2.67 16 41 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.07 1.38 7.63 -51.93 -0.40 0.99 16 43 H 0.07 1.44 6.53 -51.93 -0.34 1.10 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -30.34 338.88 -8.66 -39.00 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.16 Total: 5.91 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.50 Total: -4.58 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.16 Total: -52.37 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.34 -8.66 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755697113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.077 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds