Wall clock time and date at job start Mon Mar 30 2020 23:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99781 * 2 1 4 4 C 1.53003 * 109.47100 * 124.99775 * 3 2 1 5 5 C 1.50701 * 109.47071 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99913 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99935 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00294 * 180.02562 * 7 5 4 9 9 C 1.53579 * 112.24509 * 62.34604 * 8 7 5 10 10 C 1.54224 * 106.67544 * 121.76008 * 9 8 7 11 11 C 1.54759 * 104.15350 * 24.94436 * 10 9 8 12 12 C 1.55160 * 112.18904 * 183.38368 * 8 7 5 13 13 H 1.08999 * 112.04263 * 337.23089 * 12 8 7 14 14 N 1.46986 * 107.06736 * 100.16237 * 12 8 7 15 15 C 1.36929 * 125.57872 * 177.86674 * 14 12 8 16 16 H 1.08004 * 120.00341 * 359.97438 * 15 14 12 17 17 C 1.38815 * 120.00031 * 179.71466 * 15 14 12 18 18 N 1.31617 * 119.99916 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46986 * 90.00489 * 19 17 15 21 21 H 1.48496 * 109.47029 * 210.00506 * 19 17 15 22 22 H 1.48499 * 109.47352 * 330.00336 * 19 17 15 23 23 C 1.47366 * 108.83964 * 357.60359 * 14 12 8 24 24 C 1.54872 * 104.82404 * 24.94983 * 23 14 12 25 25 H 1.07995 * 120.00634 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99394 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00634 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46741 * 4.99916 * 3 2 1 29 29 H 1.08992 * 109.47282 * 245.00144 * 3 2 1 30 30 H 1.08994 * 109.47263 * 60.00061 * 4 3 2 31 31 H 1.09001 * 109.47116 * 300.00151 * 4 3 2 32 32 H 0.97001 * 120.00515 * 359.97438 * 7 5 4 33 33 H 1.09003 * 110.02202 * 241.06870 * 9 8 7 34 34 H 1.09003 * 110.02002 * 2.41560 * 9 8 7 35 35 H 1.09002 * 110.49183 * 143.60431 * 10 9 8 36 36 H 1.08993 * 110.49813 * 266.13928 * 10 9 8 37 37 H 1.09004 * 110.67206 * 80.62237 * 11 10 9 38 38 H 1.09006 * 110.66617 * 203.58705 * 11 10 9 39 39 H 0.97000 * 120.00284 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.36987 * 143.78501 * 23 14 12 41 41 H 1.09002 * 110.36796 * 266.11474 * 23 14 12 42 42 H 1.08998 * 110.96695 * 81.05080 * 24 23 14 43 43 H 1.09001 * 110.96393 * 204.81021 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7880 2.6386 1.1820 6 8 3.5695 3.4649 0.3216 7 7 4.7049 2.8873 2.1379 8 6 5.4366 4.1565 2.1387 9 6 4.5056 5.3642 2.3218 10 6 4.9894 6.1087 3.5828 11 6 6.4837 5.7234 3.6998 12 6 6.5026 4.2177 3.2644 13 1 6.2767 3.5301 4.0794 14 7 7.8021 3.9220 2.6446 15 6 9.0098 3.9168 3.2899 16 1 9.0596 4.1439 4.3446 17 6 10.1696 3.6142 2.5896 18 7 10.1084 3.3328 1.3053 19 14 11.8170 3.6064 3.4701 20 1 12.0841 2.2484 4.0084 21 1 12.8907 3.9801 2.5147 22 1 11.7860 4.5844 4.5872 23 6 7.5917 3.6259 1.2164 24 6 6.2745 4.3537 0.8506 25 1 -0.5401 0.9352 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3584 2.1316 0.0896 29 1 2.6212 1.4027 -0.9313 30 1 3.7399 0.5067 1.0922 31 1 2.4772 1.2357 2.1130 32 1 4.8800 2.2263 2.8259 33 1 4.5699 6.0200 1.4535 34 1 3.4784 5.0261 2.4585 35 1 4.8820 7.1858 3.4547 36 1 4.4368 5.7726 4.4601 37 1 7.0911 6.3291 3.0271 38 1 6.8289 5.8294 4.7283 39 1 10.9188 3.1218 0.8159 40 1 8.4182 4.0159 0.6223 41 1 7.4868 2.5518 1.0631 42 1 6.4536 5.4118 0.6598 43 1 5.7922 3.8807 -0.0048 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755697113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:06 Heat of formation + Delta-G solvation = -18.917194 kcal Electronic energy + Delta-G solvation = -22535.503625 eV Core-core repulsion = 19387.472156 eV Total energy + Delta-G solvation = -3148.031469 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55055 -39.59491 -36.31085 -35.96300 -34.66125 -33.33643 -31.95642 -30.99136 -28.37884 -27.63785 -25.73594 -25.17241 -22.56099 -21.53558 -20.81767 -20.63955 -20.15278 -18.88109 -17.95789 -17.17664 -16.83345 -16.69196 -15.92126 -15.68107 -15.45070 -15.14706 -14.68455 -14.53261 -14.34830 -13.91559 -13.52619 -13.42170 -13.14286 -13.00964 -12.90090 -12.79197 -12.63704 -12.29492 -12.03581 -11.96900 -11.88287 -11.84562 -11.69320 -11.55919 -11.46757 -11.24725 -10.72009 -10.66047 -10.17608 -9.89082 -8.85756 -7.73264 -5.18223 1.42244 1.48245 1.49531 1.58207 1.75456 2.29814 2.52006 3.35944 3.39907 3.65045 3.82481 3.96057 3.97731 4.03426 4.22158 4.35366 4.37314 4.45017 4.48607 4.50538 4.58902 4.67163 4.73923 4.80438 4.92103 4.97134 4.99271 5.09128 5.11767 5.18769 5.23280 5.26075 5.32478 5.48441 5.52296 5.64925 5.73774 5.78892 5.85395 5.93717 6.31344 6.68130 7.12364 7.37712 7.81035 8.45240 9.28053 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.004504 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.204356 B = 6214.640582 C = 6967.929485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C -0.075 4.075 4 C -0.127 4.127 5 C 0.507 3.493 6 O -0.576 6.576 7 N -0.706 5.706 8 C 0.169 3.831 9 C -0.103 4.103 10 C -0.109 4.109 11 C -0.125 4.125 12 C 0.153 3.847 13 H 0.062 0.938 14 N -0.611 5.611 15 C -0.224 4.224 16 H 0.086 0.914 17 C -0.070 4.070 18 N -0.952 5.952 19 Si 0.977 3.023 20 H -0.288 1.288 21 H -0.299 1.299 22 H -0.268 1.268 23 C 0.163 3.837 24 C -0.130 4.130 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.409 0.591 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.244 0.756 40 H 0.070 0.930 41 H -0.018 1.018 42 H 0.061 0.939 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.134 -3.284 3.442 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C -0.113 4.113 4 C -0.167 4.167 5 C 0.295 3.705 6 O -0.455 6.455 7 N -0.356 5.356 8 C 0.082 3.918 9 C -0.142 4.142 10 C -0.147 4.147 11 C -0.165 4.165 12 C 0.046 3.954 13 H 0.079 0.921 14 N -0.335 5.335 15 C -0.353 4.353 16 H 0.104 0.896 17 C -0.262 4.262 18 N -0.602 5.602 19 Si 0.806 3.194 20 H -0.215 1.215 21 H -0.226 1.226 22 H -0.192 1.192 23 C 0.038 3.962 24 C -0.170 4.170 25 H 0.113 0.887 26 H 0.130 0.870 27 H 0.139 0.861 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.245 0.755 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.000 1.000 42 H 0.079 0.921 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.065 -2.738 2.802 17.509 hybrid contribution 1.486 -0.443 0.174 1.560 sum -15.579 -3.180 2.976 16.177 Atomic orbital electron populations 1.24033 0.95834 1.02554 1.00407 1.22987 0.96321 0.97988 1.00529 1.20419 0.97510 0.95947 0.97439 1.21641 0.98998 0.93950 1.02073 1.21317 0.79283 0.89679 0.80182 1.90661 1.67018 1.49653 1.38205 1.45941 1.39614 1.19167 1.30920 1.21477 0.90641 0.84497 0.95225 1.22185 0.98165 0.95241 0.98642 1.22289 0.94744 1.00333 0.97374 1.23112 0.96475 0.96153 1.00724 1.22440 0.84419 0.95318 0.93225 0.92062 1.44708 1.01771 1.81197 1.05848 1.19420 0.83797 1.38558 0.93564 0.89648 1.25604 1.01247 1.02620 0.96762 1.70070 1.26713 1.55213 1.08219 0.85081 0.79315 0.77708 0.77256 1.21508 1.22594 1.19239 1.21611 0.94660 0.93902 0.86017 1.23123 0.96482 1.00113 0.97256 0.88662 0.86991 0.86125 0.91817 0.92074 0.87458 0.86452 0.75461 0.92331 0.91438 0.90513 0.89860 0.93448 0.91604 0.94638 0.91247 0.99959 0.92063 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.32 67.78 0.97 -1.85 16 2 C -0.16 -2.63 9.52 25.65 0.24 -2.39 16 3 C -0.08 -1.57 4.95 29.85 0.15 -1.43 16 4 C -0.13 -2.52 5.68 29.85 0.17 -2.35 16 5 C 0.51 14.74 7.03 87.66 0.62 15.35 16 6 O -0.58 -20.95 13.80 -3.03 -0.04 -20.99 16 7 N -0.71 -20.92 5.22 -415.77 -2.17 -23.09 16 8 C 0.17 5.92 0.74 5.19 0.00 5.92 16 9 C -0.10 -3.18 5.30 31.20 0.17 -3.01 16 10 C -0.11 -2.94 6.84 31.61 0.22 -2.72 16 11 C -0.12 -4.29 6.30 32.50 0.20 -4.09 16 12 C 0.15 5.89 3.78 46.95 0.18 6.07 16 13 H 0.06 2.23 7.95 -2.39 -0.02 2.22 16 14 N -0.61 -30.37 3.04 -659.80 -2.01 -32.38 16 15 C -0.22 -12.13 10.04 84.04 0.84 -11.29 16 16 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 17 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 18 N -0.95 -57.12 10.07 21.65 0.22 -56.90 16 19 Si 0.98 45.31 29.55 68.60 2.03 47.33 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 C 0.16 8.34 5.90 86.85 0.51 8.86 16 24 C -0.13 -5.54 5.71 31.89 0.18 -5.36 16 25 H 0.10 1.40 7.84 -2.91 -0.02 1.38 16 26 H 0.11 1.28 8.06 -2.91 -0.02 1.25 16 27 H 0.12 1.68 8.06 -2.91 -0.02 1.66 16 28 H 0.06 1.43 7.75 -2.39 -0.02 1.42 16 29 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 30 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.41 10.31 8.47 -92.71 -0.78 9.53 16 33 H 0.06 1.93 7.38 -2.39 -0.02 1.91 16 34 H 0.07 1.96 7.61 -2.39 -0.02 1.95 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.88 8.11 -2.38 -0.02 1.86 16 38 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.07 4.10 5.82 -2.39 -0.01 4.08 16 41 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 42 H 0.06 2.63 7.63 -2.39 -0.02 2.62 16 43 H 0.06 2.69 6.53 -2.39 -0.02 2.67 16 Total: -1.00 -67.43 338.88 3.14 -64.29 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.20 Total: 23.49 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 4.92 Total: -1.75 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -3.96 Total: -112.37 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.04 Total: -20.99 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -67.43 3.14 -64.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755697113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.373 kcal (2) G-P(sol) polarization free energy of solvation -67.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds