Wall clock time and date at job start Mon Mar 30 2020 23:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99974 * 2 1 4 4 C 1.53007 * 109.47173 * 124.99538 * 3 2 1 5 5 C 1.50696 * 109.46861 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00287 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99597 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99990 * 180.02562 * 7 5 4 9 9 C 1.53586 * 112.23854 * 300.34750 * 8 7 5 10 10 C 1.54167 * 106.69786 * 237.97790 * 9 8 7 11 11 C 1.54759 * 104.36762 * 335.87212 * 10 9 8 12 12 C 1.54771 * 103.21242 * 37.32706 * 11 10 9 13 13 H 1.09006 * 111.86506 * 84.92404 * 12 11 10 14 14 N 1.46981 * 108.68684 * 209.79821 * 12 11 10 15 15 C 1.36940 * 125.57759 * 294.10196 * 14 12 11 16 16 H 1.07997 * 119.99830 * 10.95156 * 15 14 12 17 17 C 1.38811 * 119.99921 * 190.95060 * 15 14 12 18 18 N 1.31618 * 119.99971 * 9.07169 * 17 15 14 19 19 Si 1.86796 * 119.99826 * 189.07704 * 17 15 14 20 20 H 1.48503 * 109.47297 * 94.19012 * 19 17 15 21 21 H 1.48501 * 109.47054 * 214.18112 * 19 17 15 22 22 H 1.48497 * 109.47121 * 334.18322 * 19 17 15 23 23 C 1.47369 * 108.84062 * 114.12295 * 14 12 11 24 24 C 1.54860 * 104.82171 * 335.31205 * 23 14 12 25 25 H 1.08004 * 119.99833 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.00294 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.00224 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46634 * 5.00302 * 3 2 1 29 29 H 1.08991 * 109.47357 * 245.00188 * 3 2 1 30 30 H 1.09001 * 109.47391 * 300.00671 * 4 3 2 31 31 H 1.09006 * 109.46785 * 60.00134 * 4 3 2 32 32 H 0.97003 * 120.00286 * 359.97438 * 7 5 4 33 33 H 1.08995 * 110.01794 * 358.13390 * 9 8 7 34 34 H 1.09005 * 110.01400 * 119.52237 * 9 8 7 35 35 H 1.09008 * 110.80911 * 216.92822 * 10 9 8 36 36 H 1.09009 * 110.09835 * 94.46405 * 10 9 8 37 37 H 1.08998 * 110.67019 * 278.89482 * 11 10 9 38 38 H 1.09010 * 110.66909 * 155.76023 * 11 10 9 39 39 H 0.97000 * 120.00040 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.36560 * 94.14983 * 23 14 12 41 41 H 1.08998 * 110.36899 * 216.36740 * 23 14 12 42 42 H 1.08998 * 110.97110 * 278.95141 * 24 23 14 43 43 H 1.09009 * 110.96983 * 155.19125 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1817 5 6 3.7888 2.6380 1.1813 6 8 3.5703 3.4643 0.3209 7 7 4.7059 2.8866 2.1371 8 6 5.4385 4.1554 2.1371 9 6 6.2422 4.3625 0.8448 10 6 7.7150 4.5426 1.2632 11 6 7.6402 5.0479 2.7241 12 6 6.4471 4.2562 3.3116 13 1 6.7505 3.2736 3.6730 14 7 5.8116 5.0698 4.3577 15 6 6.3869 5.4288 5.5474 16 1 7.4422 5.2651 5.7080 17 6 5.6137 6.0033 6.5469 18 7 4.3036 6.0405 6.4259 19 14 6.4325 6.7235 8.0635 20 1 6.6519 8.1786 7.8638 21 1 5.5583 6.5125 9.2453 22 1 7.7379 6.0520 8.2872 23 6 4.4537 5.4355 3.9170 24 6 4.5085 5.3721 2.3707 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3584 2.1316 0.0896 29 1 2.6212 1.4027 -0.9313 30 1 2.4771 1.2356 2.1131 31 1 3.7399 0.5066 1.0922 32 1 4.8805 2.2259 2.8255 33 1 6.1297 3.4965 0.1926 34 1 5.9004 5.2623 0.3332 35 1 8.2103 5.2785 0.6297 36 1 8.2373 3.5869 1.2162 37 1 7.4417 6.1193 2.7509 38 1 8.5597 4.8124 3.2602 39 1 3.7632 6.4423 7.1241 40 1 3.7252 4.7211 4.3004 41 1 4.2059 6.4438 4.2485 42 1 4.9452 6.2817 1.9582 43 1 3.5182 5.1922 1.9522 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755697115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:14 Heat of formation + Delta-G solvation = -4.101069 kcal Electronic energy + Delta-G solvation = -22538.938130 eV Core-core repulsion = 19391.549136 eV Total energy + Delta-G solvation = -3147.388994 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.17129 -38.24648 -35.40128 -34.21329 -33.36914 -31.54034 -30.78330 -29.53272 -26.73075 -26.18663 -24.18854 -23.80270 -21.06289 -20.01862 -19.89055 -19.36758 -18.74093 -16.98277 -16.67767 -15.84981 -15.63919 -14.92992 -14.75768 -14.26910 -14.14576 -13.59873 -13.48339 -13.07958 -12.77013 -12.62211 -12.21300 -12.15264 -11.81302 -11.60726 -11.20372 -11.14931 -11.08668 -11.00882 -10.78640 -10.66867 -10.51194 -10.15603 -10.10670 -9.87996 -9.77482 -9.65187 -9.55913 -9.24859 -8.61492 -8.48878 -6.81803 -5.75075 -3.09158 2.13163 2.95165 3.38652 3.44137 3.46103 3.51801 4.47657 4.71816 4.84422 4.93339 5.08887 5.15468 5.22286 5.29155 5.35638 5.50806 5.57274 5.65808 5.73655 5.81751 5.87646 5.91078 5.99629 6.09133 6.10804 6.15615 6.30276 6.36396 6.42009 6.49147 6.53320 6.59651 6.64544 6.77036 6.78751 6.99427 7.15976 7.53858 7.61319 7.78961 7.90003 8.25220 8.58024 9.18334 9.80484 10.47917 11.37138 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.004675 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.051220 B = 5988.336089 C = 6923.973733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.078 4.078 4 C -0.137 4.137 5 C 0.511 3.489 6 O -0.542 6.542 7 N -0.707 5.707 8 C 0.162 3.838 9 C -0.109 4.109 10 C -0.125 4.125 11 C -0.130 4.130 12 C 0.161 3.839 13 H 0.046 0.954 14 N -0.594 5.594 15 C -0.228 4.228 16 H 0.076 0.924 17 C -0.006 4.006 18 N -0.916 5.916 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.175 3.825 24 C -0.143 4.143 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.399 0.601 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.252 0.748 40 H 0.024 0.976 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 -10.079 -11.338 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.116 4.116 4 C -0.177 4.177 5 C 0.298 3.702 6 O -0.419 6.419 7 N -0.356 5.356 8 C 0.075 3.925 9 C -0.148 4.148 10 C -0.163 4.163 11 C -0.170 4.170 12 C 0.053 3.947 13 H 0.064 0.936 14 N -0.318 5.318 15 C -0.356 4.356 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.563 5.563 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.050 3.950 24 C -0.182 4.182 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.234 0.766 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.217 -9.383 -11.718 15.061 hybrid contribution 0.417 -0.045 1.308 1.373 sum -0.801 -9.428 -10.410 14.067 Atomic orbital electron populations 1.23871 0.96025 1.01819 1.01521 1.23001 0.96095 0.98441 0.99588 1.20486 0.97847 0.95214 0.98013 1.21630 0.98996 0.96008 1.01114 1.20569 0.79571 0.88755 0.81348 1.90673 1.65619 1.48091 1.37548 1.45956 1.40348 1.19375 1.29969 1.21607 0.92075 0.83696 0.95097 1.22222 0.94502 1.01807 0.96259 1.22354 0.96069 1.00318 0.97534 1.22938 0.99081 1.01203 0.93766 1.21782 0.91011 0.94018 0.87911 0.93627 1.44495 1.13237 1.57841 1.16233 1.18998 0.92523 1.34533 0.89570 0.90644 1.24830 0.95375 1.02047 0.97988 1.69970 1.03023 1.49035 1.34271 0.86148 0.78218 0.79168 0.82484 1.21631 1.21826 1.20611 1.21404 0.86399 1.00501 0.86677 1.23306 0.98927 0.95790 1.00201 0.88661 0.88487 0.87463 0.90690 0.90328 0.88882 0.89155 0.76629 0.92196 0.91398 0.92255 0.92466 0.90831 0.92350 0.93741 0.95813 0.91387 0.91515 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.74 14.32 29.02 0.42 -1.33 16 2 C -0.15 -1.42 9.52 -36.02 -0.34 -1.76 16 3 C -0.08 -0.86 4.95 -27.88 -0.14 -1.00 16 4 C -0.14 -1.52 5.68 -27.88 -0.16 -1.67 16 5 C 0.51 7.72 6.98 -10.99 -0.08 7.64 16 6 O -0.54 -9.85 13.86 5.56 0.08 -9.78 16 7 N -0.71 -11.02 5.23 -45.35 -0.24 -11.26 16 8 C 0.16 2.89 0.73 -129.37 -0.09 2.80 16 9 C -0.11 -1.77 5.25 -25.82 -0.14 -1.90 16 10 C -0.12 -1.85 6.82 -25.20 -0.17 -2.03 16 11 C -0.13 -2.32 6.22 -24.87 -0.15 -2.47 16 12 C 0.16 3.19 3.65 -65.60 -0.24 2.95 16 13 H 0.05 0.90 7.99 -51.93 -0.42 0.48 16 14 N -0.59 -14.55 3.03 -161.14 -0.49 -15.04 16 15 C -0.23 -6.14 9.97 -15.06 -0.15 -6.29 16 16 H 0.08 1.98 7.84 -52.49 -0.41 1.56 16 17 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 18 N -0.92 -26.61 10.69 55.49 0.59 -26.02 16 19 Si 0.91 21.79 29.56 -169.99 -5.03 16.77 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.17 4.25 5.42 -2.59 -0.01 4.24 16 24 C -0.14 -2.91 5.77 -24.74 -0.14 -3.05 16 25 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16 26 H 0.10 0.87 7.84 -52.49 -0.41 0.46 16 27 H 0.11 0.84 8.06 -52.48 -0.42 0.42 16 28 H 0.07 0.92 7.75 -51.93 -0.40 0.52 16 29 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.40 5.57 8.50 -40.82 -0.35 5.22 16 33 H 0.06 0.95 7.40 -51.93 -0.38 0.57 16 34 H 0.07 1.15 7.41 -51.93 -0.38 0.76 16 35 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 37 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 38 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.02 0.63 8.07 -51.93 -0.42 0.21 16 41 H 0.07 1.86 6.93 -51.93 -0.36 1.50 16 42 H 0.07 1.35 7.65 -51.93 -0.40 0.95 16 43 H 0.07 1.39 6.82 -51.92 -0.35 1.03 16 LS Contribution 339.91 15.07 5.12 5.12 Total: -1.00 -30.48 339.91 -8.68 -39.16 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.22 Total: 5.17 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.50 Total: -4.13 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.13 Total: -52.31 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.48 -8.68 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755697115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.060 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds