Wall clock time and date at job start Mon Mar 30 2020 23:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32994 * 120.00207 * 2 1 4 4 C 1.50694 * 119.99742 * 0.02562 * 3 2 1 5 5 C 1.47099 * 119.99892 * 179.97438 * 3 2 1 6 6 O 1.21610 * 120.00519 * 0.02562 * 5 3 2 7 7 N 1.34784 * 119.99647 * 180.02562 * 5 3 2 8 8 C 1.46494 * 119.99635 * 180.02562 * 7 5 3 9 9 C 1.53588 * 112.24430 * 297.64296 * 8 7 5 10 10 C 1.55462 * 106.05901 * 238.16956 * 9 8 7 11 11 C 1.54759 * 104.36324 * 335.35806 * 10 9 8 12 12 C 1.54775 * 103.21707 * 37.68060 * 11 10 9 13 13 H 1.09003 * 112.61260 * 85.33435 * 12 11 10 14 14 N 1.46978 * 108.69318 * 209.80114 * 12 11 10 15 15 C 1.36934 * 125.57787 * 294.13665 * 14 12 11 16 16 H 1.07999 * 120.00355 * 359.97275 * 15 14 12 17 17 C 1.38809 * 119.99938 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00053 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00168 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46840 * 60.00477 * 19 17 15 21 21 H 1.48497 * 109.47309 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47132 * 300.00507 * 19 17 15 23 23 C 1.47369 * 108.83992 * 114.13510 * 14 12 11 24 24 C 1.54868 * 104.82350 * 335.30338 * 23 14 12 25 25 H 1.08997 * 109.46878 * 299.99551 * 1 2 3 26 26 H 1.08992 * 109.47012 * 59.99800 * 1 2 3 27 27 H 1.08998 * 109.47055 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99988 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47280 * 269.99860 * 4 3 2 30 30 H 1.09005 * 109.47415 * 30.00149 * 4 3 2 31 31 H 1.09002 * 109.46945 * 149.99418 * 4 3 2 32 32 H 0.96995 * 120.00015 * 359.72716 * 7 5 3 33 33 H 1.08998 * 110.01631 * 358.14045 * 9 8 7 34 34 H 1.08994 * 110.02055 * 119.53298 * 9 8 7 35 35 H 1.08997 * 110.50830 * 216.56693 * 10 9 8 36 36 H 1.08993 * 110.28402 * 94.03873 * 10 9 8 37 37 H 1.08997 * 110.66995 * 279.25051 * 11 10 9 38 38 H 1.09003 * 110.81718 * 156.17993 * 11 10 9 39 39 H 0.96998 * 120.00268 * 180.02562 * 18 17 15 40 40 H 1.09006 * 110.36876 * 216.47029 * 23 14 12 41 41 H 1.09000 * 110.37166 * 94.14208 * 23 14 12 42 42 H 1.09001 * 110.97229 * 278.96032 * 24 23 14 43 43 H 1.09002 * 111.00315 * 155.20421 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2511 0.0985 0.0006 7 7 4.3169 2.3189 0.0011 8 6 5.7819 2.3188 0.0011 9 6 6.3632 1.6587 1.2601 10 6 7.2554 2.7365 1.9379 11 6 7.6556 3.6854 0.7827 12 6 6.3735 3.7507 -0.0819 13 1 5.6682 4.5034 0.2704 14 7 6.7604 3.9774 -1.4816 15 6 7.3595 5.1079 -1.9695 16 1 7.5855 5.9289 -1.3053 17 6 7.6764 5.1987 -3.3179 18 7 7.4006 4.1983 -4.1276 19 14 8.4931 6.7412 -3.9837 20 1 9.7921 6.9500 -3.2950 21 1 8.7246 6.5884 -5.4425 22 1 7.6113 7.9115 -3.7427 23 6 6.3980 2.7889 -2.2740 24 6 6.3705 1.6250 -1.2527 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 2.0470 -0.9353 0.0004 29 1 1.2365 2.7717 -1.0269 30 1 0.4663 2.3264 0.5148 31 1 2.0078 3.2163 0.5145 32 1 3.8320 3.1589 -0.0029 33 1 5.5570 1.3479 1.9246 34 1 6.9717 0.7979 0.9830 35 1 8.1403 2.2775 2.3787 36 1 6.6867 3.2759 2.6952 37 1 8.4842 3.2675 0.2111 38 1 7.9128 4.6734 1.1645 39 1 7.6224 4.2616 -5.0698 40 1 7.1483 2.6018 -3.0423 41 1 5.4150 2.9198 -2.7265 42 1 7.3766 1.2540 -1.0569 43 1 5.7198 0.8203 -1.5948 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755698007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:19 Heat of formation + Delta-G solvation = -19.908620 kcal Electronic energy + Delta-G solvation = -22874.479074 eV Core-core repulsion = 19726.404614 eV Total energy + Delta-G solvation = -3148.074461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64201 -39.71711 -36.43634 -36.00908 -34.74672 -33.32106 -31.63925 -30.02876 -28.41418 -27.59740 -26.86989 -25.72737 -23.38655 -21.91396 -21.42232 -20.22489 -19.33167 -18.89787 -18.00575 -17.16677 -16.84572 -16.19073 -16.10688 -15.67200 -15.13068 -14.82241 -14.58905 -14.37738 -14.29058 -13.93333 -13.50417 -13.37760 -13.32209 -13.16484 -12.95880 -12.84161 -12.73399 -12.63065 -12.29178 -12.13683 -12.06875 -11.93162 -11.70636 -11.58899 -11.48639 -11.26592 -10.71559 -10.71036 -10.07879 -9.80910 -8.87217 -7.73314 -5.18770 0.44681 1.48110 1.51025 1.57244 2.21112 2.35084 2.52084 3.35434 3.36983 3.62635 3.81932 3.95229 3.96312 4.02900 4.32176 4.34929 4.38580 4.45777 4.49086 4.55907 4.63896 4.74341 4.77944 4.85039 4.89192 4.92183 4.95692 5.07551 5.08835 5.15279 5.16498 5.21505 5.30656 5.47046 5.50182 5.52371 5.63748 5.65094 5.73684 5.83947 6.30196 6.63761 7.11537 7.29968 7.80093 8.44772 9.28085 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.005205 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.736415 B = 5377.726426 C = 6073.175660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 C -0.206 4.206 4 C -0.113 4.113 5 C 0.545 3.455 6 O -0.581 6.581 7 N -0.698 5.698 8 C 0.167 3.833 9 C -0.104 4.104 10 C -0.108 4.108 11 C -0.124 4.124 12 C 0.154 3.846 13 H 0.057 0.943 14 N -0.611 5.611 15 C -0.227 4.227 16 H 0.086 0.914 17 C -0.069 4.069 18 N -0.953 5.953 19 Si 0.979 3.021 20 H -0.277 1.277 21 H -0.299 1.299 22 H -0.277 1.277 23 C 0.164 3.836 24 C -0.131 4.131 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.407 0.593 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.244 0.756 40 H 0.071 0.929 41 H -0.020 1.020 42 H 0.064 0.936 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.067 -4.012 12.544 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 C -0.209 4.209 4 C -0.170 4.170 5 C 0.335 3.665 6 O -0.463 6.463 7 N -0.349 5.349 8 C 0.080 3.920 9 C -0.143 4.143 10 C -0.146 4.146 11 C -0.163 4.163 12 C 0.048 3.952 13 H 0.075 0.925 14 N -0.335 5.335 15 C -0.356 4.356 16 H 0.104 0.896 17 C -0.261 4.261 18 N -0.603 5.603 19 Si 0.807 3.193 20 H -0.203 1.203 21 H -0.225 1.225 22 H -0.203 1.203 23 C 0.039 3.961 24 C -0.170 4.170 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.244 0.756 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.089 0.911 41 H -0.002 1.002 42 H 0.082 0.918 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.563 -4.621 12.344 17.533 hybrid contribution 0.517 0.907 -1.125 1.534 sum -11.045 -3.714 11.219 16.176 Atomic orbital electron populations 1.21029 0.89255 1.04146 1.03655 1.23769 0.98169 0.96757 0.90400 1.21536 0.90980 0.98656 1.09759 1.20849 1.00635 0.92506 1.03005 1.18973 0.89083 0.83175 0.75269 1.90721 1.71089 1.32346 1.52168 1.45821 1.06028 1.08981 1.74032 1.21517 0.79493 0.95635 0.95367 1.22420 0.98939 0.98008 0.94963 1.22505 0.99417 0.95743 0.96970 1.22775 0.97516 0.99672 0.96382 1.22049 0.94946 0.92658 0.85576 0.92496 1.44707 1.69778 1.15470 1.03564 1.19395 1.30206 0.93451 0.92507 0.89574 1.25608 1.02900 1.01043 0.96535 1.70066 1.54339 1.32272 1.03629 0.85143 0.78582 0.79028 0.76527 1.20274 1.22530 1.20309 1.21599 0.96688 0.84455 0.93352 1.23134 0.99641 0.97647 0.96592 0.88971 0.89863 0.90343 0.87456 0.90945 0.88510 0.91549 0.75583 0.91562 0.92178 0.90279 0.89896 0.93263 0.91271 0.94603 0.91071 1.00215 0.91753 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 8.91 71.24 0.63 -0.95 16 2 C -0.07 -1.53 9.84 24.52 0.24 -1.29 16 3 C -0.21 -5.12 6.00 -18.71 -0.11 -5.23 16 4 C -0.11 -2.03 9.14 71.23 0.65 -1.38 16 5 C 0.54 18.13 6.94 86.57 0.60 18.73 16 6 O -0.58 -23.18 14.02 -4.06 -0.06 -23.24 16 7 N -0.70 -22.97 5.17 -419.32 -2.17 -25.13 16 8 C 0.17 6.17 0.74 5.19 0.00 6.18 16 9 C -0.10 -3.37 5.41 31.64 0.17 -3.19 16 10 C -0.11 -3.00 6.87 32.04 0.22 -2.78 16 11 C -0.12 -4.34 6.22 31.80 0.20 -4.14 16 12 C 0.15 6.14 3.67 46.24 0.17 6.31 16 13 H 0.06 2.16 7.96 -2.39 -0.02 2.14 16 14 N -0.61 -30.91 3.03 -663.68 -2.01 -32.92 16 15 C -0.23 -12.38 10.01 84.03 0.84 -11.54 16 16 H 0.09 4.43 7.83 -2.91 -0.02 4.40 16 17 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 18 N -0.95 -57.67 10.07 21.65 0.22 -57.45 16 19 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 C 0.16 8.60 5.90 86.85 0.51 9.11 16 24 C -0.13 -5.76 5.71 31.89 0.18 -5.58 16 25 H 0.09 0.89 7.40 -2.39 -0.02 0.87 16 26 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.11 2.68 7.49 -2.91 -0.02 2.66 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.20 6.49 -2.38 -0.02 1.18 16 31 H 0.07 1.15 6.71 -2.39 -0.02 1.13 16 32 H 0.41 11.81 6.58 -92.71 -0.61 11.20 16 33 H 0.07 2.07 7.58 -2.39 -0.02 2.05 16 34 H 0.06 2.05 7.37 -2.39 -0.02 2.03 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.98 8.09 -2.39 -0.02 1.96 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 39 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.07 4.26 5.83 -2.38 -0.01 4.25 16 41 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 42 H 0.06 2.83 7.63 -2.39 -0.02 2.81 16 43 H 0.06 2.69 6.53 -2.39 -0.02 2.67 16 Total: -1.00 -69.29 332.75 3.18 -66.11 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.39 Total: 24.29 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 4.78 Total: 0.83 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -3.96 Total: -115.51 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.06 Total: -23.24 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -69.29 3.18 -66.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755698007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.199 kcal (2) G-P(sol) polarization free energy of solvation -69.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds