Wall clock time and date at job start Mon Mar 30 2020 23:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32995 * 119.99775 * 2 1 4 4 C 1.50705 * 119.99696 * 180.02562 * 3 2 1 5 5 C 1.47096 * 120.00113 * 359.97438 * 3 2 1 6 6 O 1.21611 * 120.00389 * 0.02562 * 5 3 2 7 7 N 1.34777 * 119.99882 * 180.02562 * 5 3 2 8 8 C 1.46502 * 119.99994 * 179.97438 * 7 5 3 9 9 C 1.53577 * 112.67651 * 300.66693 * 8 7 5 10 10 C 1.54218 * 106.67591 * 238.54311 * 9 8 7 11 11 C 1.54757 * 104.15894 * 335.06182 * 10 9 8 12 12 C 1.54776 * 103.21148 * 37.81039 * 11 10 9 13 13 H 1.09002 * 111.86997 * 84.92480 * 12 11 10 14 14 N 1.46980 * 109.48785 * 209.45031 * 12 11 10 15 15 C 1.36937 * 125.57672 * 294.48153 * 14 12 11 16 16 H 1.07997 * 120.00170 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99904 * 179.97438 * 15 14 12 18 18 N 1.31628 * 119.99873 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00234 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46983 * 60.00124 * 19 17 15 21 21 H 1.48503 * 109.47001 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47069 * 300.00025 * 19 17 15 23 23 C 1.47323 * 108.86694 * 113.02108 * 14 12 11 24 24 C 1.54871 * 105.16907 * 336.73873 * 23 14 12 25 25 H 1.09003 * 109.47040 * 299.99972 * 1 2 3 26 26 H 1.09000 * 109.47507 * 60.00272 * 1 2 3 27 27 H 1.09000 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.99887 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.46942 * 269.99597 * 4 3 2 30 30 H 1.09000 * 109.47184 * 29.99588 * 4 3 2 31 31 H 1.08999 * 109.47143 * 150.00086 * 4 3 2 32 32 H 0.97004 * 119.99897 * 0.02562 * 7 5 3 33 33 H 1.09004 * 110.01641 * 357.84539 * 9 8 7 34 34 H 1.08999 * 110.01905 * 119.19107 * 9 8 7 35 35 H 1.08997 * 110.49460 * 93.72969 * 10 9 8 36 36 H 1.09000 * 110.49579 * 216.25287 * 10 9 8 37 37 H 1.09001 * 110.66590 * 279.37810 * 11 10 9 38 38 H 1.09000 * 110.67186 * 156.24299 * 11 10 9 39 39 H 0.96994 * 120.00081 * 180.02562 * 18 17 15 40 40 H 1.08996 * 110.89720 * 217.43158 * 23 14 12 41 41 H 1.08999 * 109.50669 * 95.33043 * 23 14 12 42 42 H 1.09004 * 110.96773 * 278.13698 * 24 23 14 43 43 H 1.08994 * 111.00300 * 154.38362 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1518 -0.0006 5 6 1.4364 2.4257 -0.0006 6 8 0.2203 2.4257 -0.0006 7 7 2.1103 3.5929 -0.0011 8 6 1.3778 4.8616 -0.0022 9 6 0.4563 5.0122 -1.2216 10 6 0.9052 6.2891 -1.9606 11 6 1.5832 7.1434 -0.8626 12 6 2.3240 6.0911 -0.0027 13 1 3.3048 5.8496 -0.4124 14 7 2.4139 6.5671 1.3850 15 6 3.1219 7.6602 1.8080 16 1 3.6771 8.2527 1.0959 17 6 3.1261 8.0068 3.1522 18 7 2.4491 7.2850 4.0200 19 14 4.0925 9.4975 3.7294 20 1 3.5813 10.7133 3.0470 21 1 3.9357 9.6507 5.1982 22 1 5.5291 9.3132 3.4020 23 6 1.5894 5.6969 2.2415 24 6 0.5460 5.0622 1.2892 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.0469 -0.9353 0.0004 29 1 4.0427 1.1516 1.0270 30 1 4.0421 0.2619 -0.5147 31 1 4.0421 2.0419 -0.5143 32 1 3.0803 3.5929 -0.0015 33 1 0.5591 4.1466 -1.8761 34 1 -0.5792 5.1129 -0.8965 35 1 1.6182 6.0438 -2.7477 36 1 0.0441 6.8121 -2.3765 37 1 0.8360 7.6692 -0.2681 38 1 2.2898 7.8464 -1.3036 39 1 2.4517 7.5274 4.9592 40 1 1.0909 6.2761 3.0187 41 1 2.2166 4.9243 2.6862 42 1 -0.2875 5.7426 1.1146 43 1 0.1925 4.1072 1.6778 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755698008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:22 Heat of formation + Delta-G solvation = -16.410061 kcal Electronic energy + Delta-G solvation = -23073.469862 eV Core-core repulsion = 19925.547110 eV Total energy + Delta-G solvation = -3147.922752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64889 -39.80145 -36.15322 -35.75348 -34.85152 -33.34102 -31.66565 -30.60744 -28.42971 -27.59307 -25.78585 -25.72674 -23.69125 -22.14390 -21.49050 -20.16470 -19.86206 -18.89021 -17.41083 -17.04373 -16.84827 -16.19284 -15.73843 -15.49410 -15.14431 -15.02809 -14.60314 -14.49994 -14.03489 -13.83734 -13.66305 -13.44713 -13.40593 -13.13463 -12.91767 -12.80926 -12.73447 -12.64461 -12.33394 -12.23368 -12.06953 -11.90857 -11.70968 -11.54184 -11.46384 -11.25439 -10.70458 -10.38305 -10.08836 -9.71368 -8.86561 -7.74309 -5.18318 0.51238 1.47954 1.50763 1.56980 2.26352 2.38043 2.52314 3.36059 3.37642 3.65255 3.85516 3.95525 3.97035 4.00127 4.35669 4.39571 4.41783 4.46151 4.56185 4.59637 4.66188 4.79862 4.80563 4.86240 4.90377 4.92788 4.95655 5.07673 5.09036 5.17482 5.22446 5.26955 5.31403 5.47779 5.51109 5.55683 5.64163 5.70068 5.75346 5.84703 6.29178 6.69180 7.12037 7.36095 7.80383 8.45045 9.28092 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.005342 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.333905 B = 5240.354358 C = 5786.030120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.210 4.210 4 C -0.111 4.111 5 C 0.540 3.460 6 O -0.564 6.564 7 N -0.702 5.702 8 C 0.170 3.830 9 C -0.101 4.101 10 C -0.110 4.110 11 C -0.126 4.126 12 C 0.153 3.847 13 H 0.056 0.944 14 N -0.610 5.610 15 C -0.227 4.227 16 H 0.085 0.915 17 C -0.069 4.069 18 N -0.953 5.953 19 Si 0.978 3.022 20 H -0.277 1.277 21 H -0.299 1.299 22 H -0.277 1.277 23 C 0.168 3.832 24 C -0.129 4.129 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.158 0.842 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.405 0.595 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.244 0.756 40 H 0.067 0.933 41 H -0.019 1.019 42 H 0.064 0.936 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 -12.171 -12.202 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.083 4.083 3 C -0.213 4.213 4 C -0.167 4.167 5 C 0.331 3.669 6 O -0.445 6.445 7 N -0.353 5.353 8 C 0.083 3.917 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.166 4.166 12 C 0.046 3.954 13 H 0.073 0.927 14 N -0.334 5.334 15 C -0.356 4.356 16 H 0.103 0.897 17 C -0.261 4.261 18 N -0.603 5.603 19 Si 0.807 3.193 20 H -0.203 1.203 21 H -0.225 1.225 22 H -0.203 1.203 23 C 0.043 3.957 24 C -0.168 4.168 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.176 0.824 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.242 0.758 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.085 0.915 41 H -0.001 1.001 42 H 0.082 0.918 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.487 -12.047 -12.001 17.012 hybrid contribution 0.793 0.950 1.065 1.633 sum 0.306 -11.097 -10.936 15.583 Atomic orbital electron populations 1.20944 0.92686 1.01590 1.02284 1.23897 0.96752 0.97482 0.90129 1.21642 0.97717 0.92148 1.09829 1.20786 0.89142 1.03964 1.02851 1.18941 0.87341 0.84807 0.75807 1.90739 1.14621 1.88011 1.51167 1.45848 1.10335 1.04608 1.74501 1.21433 0.92162 0.82847 0.95234 1.22158 0.98242 0.98488 0.95158 1.22301 1.00716 0.94655 0.97078 1.22799 0.99227 0.97790 0.96749 1.22043 0.95792 0.91746 0.85799 0.92686 1.44665 1.55326 1.30681 1.02770 1.19385 1.21696 1.02239 0.92271 0.89695 1.25604 1.02132 1.02146 0.96180 1.70092 1.46956 1.41580 1.01676 0.85154 0.78483 0.79319 0.76392 1.20318 1.22501 1.20322 1.21525 0.90182 0.91061 0.92969 1.23124 0.97645 0.99539 0.96524 0.92624 0.91740 0.90722 0.82444 0.91260 0.88805 0.91697 0.75835 0.91681 0.92015 0.90072 0.90287 0.93282 0.91455 0.94600 0.91523 1.00111 0.91755 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 8.45 71.23 0.60 -2.10 16 2 C -0.06 -1.27 9.95 24.52 0.24 -1.03 16 3 C -0.21 -5.03 6.00 -18.70 -0.11 -5.14 16 4 C -0.11 -1.98 9.61 71.24 0.68 -1.30 16 5 C 0.54 17.14 6.89 86.57 0.60 17.74 16 6 O -0.56 -20.62 10.95 -4.06 -0.04 -20.67 16 7 N -0.70 -22.69 5.19 -419.33 -2.18 -24.87 16 8 C 0.17 6.19 0.75 5.19 0.00 6.19 16 9 C -0.10 -3.21 5.23 31.20 0.16 -3.05 16 10 C -0.11 -3.02 6.84 31.61 0.22 -2.80 16 11 C -0.13 -4.41 6.26 31.80 0.20 -4.21 16 12 C 0.15 6.07 3.61 46.24 0.17 6.24 16 13 H 0.06 2.10 7.99 -2.39 -0.02 2.08 16 14 N -0.61 -30.75 3.07 -663.81 -2.04 -32.79 16 15 C -0.23 -12.39 10.03 84.03 0.84 -11.55 16 16 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 17 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 18 N -0.95 -57.57 10.10 21.65 0.22 -57.35 16 19 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.17 8.69 5.83 86.86 0.51 9.19 16 24 C -0.13 -5.54 5.76 31.89 0.18 -5.35 16 25 H 0.06 1.57 7.22 -2.39 -0.02 1.55 16 26 H 0.06 1.68 7.22 -2.39 -0.02 1.66 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.09 1.18 8.07 -2.39 -0.02 1.16 16 31 H 0.06 1.15 6.70 -2.39 -0.02 1.13 16 32 H 0.40 11.85 6.60 -92.71 -0.61 11.23 16 33 H 0.06 2.00 7.43 -2.38 -0.02 1.98 16 34 H 0.06 2.05 7.37 -2.39 -0.02 2.04 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.07 3.95 5.93 -2.39 -0.01 3.94 16 41 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 42 H 0.06 2.76 7.62 -2.38 -0.02 2.74 16 43 H 0.06 2.60 6.82 -2.39 -0.02 2.59 16 Total: -1.00 -67.21 330.99 3.13 -64.08 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.38 Total: 24.62 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 4.76 Total: -0.55 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.00 Total: -115.01 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.04 Total: -20.67 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -67.21 3.13 -64.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755698008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.670 kcal (2) G-P(sol) polarization free energy of solvation -67.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds