Wall clock time and date at job start Mon Mar 30 2020 23:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32997 * 120.00083 * 2 1 4 4 C 1.50703 * 119.99910 * 359.97438 * 3 2 1 5 5 C 1.47096 * 120.00251 * 179.97438 * 3 2 1 6 6 O 1.21619 * 120.00010 * 359.97438 * 5 3 2 7 7 N 1.34777 * 120.00543 * 179.97438 * 5 3 2 8 8 C 1.46497 * 120.00213 * 179.97438 * 7 5 3 9 9 C 1.51219 * 111.06897 * 291.66155 * 8 7 5 10 10 C 1.55051 * 104.91812 * 275.58450 * 9 8 7 11 11 C 1.56284 * 105.91516 * 353.32803 * 10 9 8 12 12 C 1.50529 * 101.75931 * 335.35670 * 11 10 9 13 13 H 1.08994 * 108.15381 * 293.07405 * 12 11 10 14 14 N 1.42708 * 128.13353 * 161.28368 * 12 11 10 15 15 C 1.36937 * 127.10600 * 28.35517 * 14 12 11 16 16 H 1.08003 * 119.99499 * 359.97438 * 15 14 12 17 17 C 1.38805 * 120.00258 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99977 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00190 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47056 * 90.00022 * 19 17 15 21 21 H 1.48497 * 109.47438 * 209.99994 * 19 17 15 22 22 H 1.48500 * 109.47018 * 330.00165 * 19 17 15 23 23 C 1.49293 * 105.79271 * 208.31557 * 14 12 11 24 24 C 1.52135 * 111.07935 * 71.70298 * 8 7 5 25 25 H 1.09008 * 109.46778 * 60.00804 * 1 2 3 26 26 H 1.08993 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47386 * 300.00696 * 1 2 3 28 28 H 1.07999 * 119.99829 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47152 * 90.00295 * 4 3 2 30 30 H 1.09001 * 109.46980 * 330.00395 * 4 3 2 31 31 H 1.09004 * 109.47113 * 210.00376 * 4 3 2 32 32 H 0.97001 * 119.99087 * 0.02562 * 7 5 3 33 33 H 1.09001 * 110.40311 * 34.92015 * 9 8 7 34 34 H 1.08995 * 110.40748 * 157.35399 * 9 8 7 35 35 H 1.08994 * 110.48344 * 234.05103 * 10 9 8 36 36 H 1.08997 * 109.84587 * 112.26766 * 10 9 8 37 37 H 1.09008 * 110.97012 * 217.24754 * 11 10 9 38 38 H 1.08997 * 110.97186 * 93.47694 * 11 10 9 39 39 H 0.96998 * 119.99700 * 179.97438 * 18 17 15 40 40 H 1.09004 * 110.04851 * 127.92785 * 23 14 12 41 41 H 1.08997 * 110.05005 * 249.40280 * 23 14 12 42 42 H 1.08997 * 111.14792 * 191.83690 * 24 8 7 43 43 H 1.08996 * 111.14746 * 316.06261 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1518 0.0006 6 8 4.2511 0.0986 0.0015 7 7 4.3169 2.3190 0.0000 8 6 5.7819 2.3189 0.0012 9 6 6.3245 1.7992 1.3135 10 6 6.3312 3.0291 2.2577 11 6 5.9427 4.2542 1.3685 12 6 6.3589 3.7844 0.0003 13 1 7.4454 3.7000 -0.0139 14 7 5.9439 4.2887 -1.2686 15 6 5.5413 5.5650 -1.5588 16 1 5.5151 6.3131 -0.7802 17 6 5.1668 5.8972 -2.8534 18 7 5.1981 4.9853 -3.8021 19 14 4.6169 7.6380 -3.2491 20 1 5.7944 8.4508 -3.6466 21 1 3.6378 7.6063 -4.3652 22 1 3.9812 8.2409 -2.0501 23 6 6.0403 3.1378 -2.2145 24 6 6.3301 1.8721 -1.3458 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.0470 -0.9353 0.0004 29 1 1.2365 2.7718 1.0270 30 1 0.4662 2.3264 -0.5147 31 1 2.0078 3.2164 -0.5144 32 1 3.8318 3.1590 -0.0003 33 1 5.6791 1.0140 1.7073 34 1 7.3410 1.4277 1.1841 35 1 7.3226 3.1754 2.6863 36 1 5.5953 2.8915 3.0499 37 1 6.5018 5.1426 1.6626 38 1 4.8694 4.4398 1.4076 39 1 4.9361 5.2174 -4.7067 40 1 5.0994 3.0152 -2.7511 41 1 6.8548 3.3012 -2.9202 42 1 7.3999 1.6713 -1.2879 43 1 5.7888 1.0042 -1.7223 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755698009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:26 Heat of formation + Delta-G solvation = 9.960536 kcal Electronic energy + Delta-G solvation = -23289.190360 eV Core-core repulsion = 20142.411124 eV Total energy + Delta-G solvation = -3146.779237 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.46505 -38.32240 -35.25093 -34.43269 -33.02239 -31.72010 -30.05358 -28.88491 -26.94338 -26.10094 -25.62951 -24.05896 -21.97839 -20.47035 -19.67229 -18.72628 -18.16995 -16.78603 -16.47520 -15.75378 -14.90318 -14.74825 -14.41711 -14.30443 -13.93471 -13.80337 -13.22505 -13.17163 -12.67480 -12.50305 -12.33195 -12.26895 -11.95830 -11.78085 -11.40010 -11.34635 -11.15926 -11.01345 -10.91661 -10.78583 -10.45447 -10.28911 -10.02352 -9.94338 -9.69412 -9.50715 -9.08212 -8.89128 -8.68095 -8.35637 -6.87670 -5.76304 -3.11156 1.63237 3.35979 3.41341 3.43281 3.70600 3.78354 4.43610 4.64988 4.98816 5.06564 5.22670 5.26459 5.29850 5.37385 5.46662 5.51703 5.61029 5.72337 5.75550 5.83156 5.85137 5.91100 5.98060 6.02474 6.09574 6.17476 6.27658 6.34866 6.39397 6.45942 6.51908 6.57430 6.68063 6.73909 6.84754 6.93142 7.27541 7.51767 7.59824 7.76748 8.17405 8.18296 8.80120 9.11465 9.78021 10.47621 11.35760 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.006949 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.160255 B = 4028.502073 C = 4990.534341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.177 4.177 4 C -0.122 4.122 5 C 0.550 3.450 6 O -0.557 6.557 7 N -0.684 5.684 8 C 0.132 3.868 9 C -0.111 4.111 10 C -0.116 4.116 11 C -0.114 4.114 12 C 0.157 3.843 13 H 0.022 0.978 14 N -0.585 5.585 15 C -0.231 4.231 16 H 0.079 0.921 17 C -0.004 4.004 18 N -0.918 5.918 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.179 3.821 24 C -0.138 4.138 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.403 0.597 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.253 0.747 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.064 0.936 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 -6.189 9.710 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.112 4.112 3 C -0.180 4.180 4 C -0.178 4.178 5 C 0.338 3.662 6 O -0.437 6.437 7 N -0.334 5.334 8 C 0.044 3.956 9 C -0.150 4.150 10 C -0.155 4.155 11 C -0.153 4.153 12 C 0.047 3.953 13 H 0.040 0.960 14 N -0.308 5.308 15 C -0.359 4.359 16 H 0.097 0.903 17 C -0.201 4.201 18 N -0.564 5.564 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.055 3.945 24 C -0.177 4.177 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.141 0.859 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.240 0.760 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.172 -6.733 9.483 12.729 hybrid contribution -0.427 1.361 -0.422 1.488 sum -5.600 -5.372 9.061 11.930 Atomic orbital electron populations 1.20935 0.92541 1.02495 1.02368 1.23434 0.95872 0.97904 0.94015 1.21565 0.93383 0.96573 1.06471 1.20859 1.00186 0.94617 1.02170 1.18298 0.87366 0.84006 0.76520 1.90715 1.70049 1.31401 1.51562 1.45676 1.06635 1.08294 1.72825 1.21510 0.79711 1.00569 0.93847 1.21746 1.01056 0.97414 0.94791 1.22707 1.00764 0.94341 0.97639 1.21840 1.01113 0.97120 0.95190 1.20849 0.96334 0.90261 0.87894 0.96047 1.43680 1.77476 1.07346 1.02298 1.19008 1.37663 0.85080 0.94177 0.90322 1.24795 1.01649 0.97761 0.95895 1.69927 1.53394 1.31885 1.01229 0.86175 0.78117 0.84074 0.77698 1.21622 1.21737 1.20697 1.22004 1.00915 0.81531 0.90039 1.22777 0.99683 0.99889 0.95395 0.90870 0.91819 0.91136 0.85881 0.91240 0.91209 0.90920 0.75955 0.91195 0.91331 0.91919 0.92352 0.91800 0.91711 0.93679 0.91714 0.94718 0.91731 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.91 36.01 0.32 -0.88 16 2 C -0.09 -1.21 9.84 -36.13 -0.36 -1.56 16 3 C -0.18 -2.64 6.00 -102.85 -0.62 -3.26 16 4 C -0.12 -1.55 9.14 36.01 0.33 -1.22 16 5 C 0.55 10.03 7.06 -12.67 -0.09 9.94 16 6 O -0.56 -11.49 14.37 5.26 0.08 -11.41 16 7 N -0.68 -12.53 4.32 -47.74 -0.21 -12.73 16 8 C 0.13 2.48 0.42 -130.71 -0.05 2.42 16 9 C -0.11 -1.83 6.01 -26.54 -0.16 -1.99 16 10 C -0.12 -1.68 6.91 -23.88 -0.17 -1.85 16 11 C -0.11 -1.91 6.47 -26.20 -0.17 -2.08 16 12 C 0.16 3.16 2.61 -68.71 -0.18 2.98 16 13 H 0.02 0.47 7.99 -51.93 -0.41 0.05 16 14 N -0.58 -14.16 3.12 -162.67 -0.51 -14.66 16 15 C -0.23 -6.08 10.29 -15.06 -0.15 -6.24 16 16 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 17 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 18 N -0.92 -26.24 10.55 55.49 0.59 -25.65 16 19 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.18 4.33 5.33 -0.76 0.00 4.33 16 24 C -0.14 -2.84 6.22 -25.44 -0.16 -3.00 16 25 H 0.07 0.67 7.40 -51.92 -0.38 0.28 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 28 H 0.12 1.71 7.49 -52.49 -0.39 1.32 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.77 6.49 -51.93 -0.34 0.43 16 31 H 0.07 1.06 6.70 -51.93 -0.35 0.71 16 32 H 0.40 7.41 5.90 -40.82 -0.24 7.17 16 33 H 0.07 1.21 6.84 -51.93 -0.36 0.85 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.06 1.09 7.37 -51.93 -0.38 0.71 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.06 1.75 7.05 -51.93 -0.37 1.38 16 41 H 0.03 0.92 7.98 -51.93 -0.41 0.50 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.07 1.45 7.17 -51.93 -0.37 1.07 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -29.96 333.54 -8.54 -38.49 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.93 Total: 7.17 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.55 Total: -2.61 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.13 Total: -53.05 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.96 -8.54 -38.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755698009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.453 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds