Wall clock time and date at job start Mon Mar 30 2020 23:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32997 * 120.00083 * 2 1 4 4 C 1.50703 * 119.99910 * 359.97438 * 3 2 1 5 5 C 1.47096 * 120.00251 * 179.97438 * 3 2 1 6 6 O 1.21619 * 120.00010 * 359.97438 * 5 3 2 7 7 N 1.34777 * 120.00543 * 179.97438 * 5 3 2 8 8 C 1.46497 * 120.00213 * 179.97438 * 7 5 3 9 9 C 1.51219 * 111.06897 * 291.66155 * 8 7 5 10 10 C 1.55051 * 104.91812 * 275.58450 * 9 8 7 11 11 C 1.56284 * 105.91516 * 353.32803 * 10 9 8 12 12 C 1.50529 * 101.75931 * 335.35670 * 11 10 9 13 13 H 1.08994 * 108.15381 * 293.07405 * 12 11 10 14 14 N 1.42708 * 128.13353 * 161.28368 * 12 11 10 15 15 C 1.36937 * 127.10600 * 28.35517 * 14 12 11 16 16 H 1.08003 * 119.99499 * 359.97438 * 15 14 12 17 17 C 1.38805 * 120.00258 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99977 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00190 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47056 * 90.00022 * 19 17 15 21 21 H 1.48497 * 109.47438 * 209.99994 * 19 17 15 22 22 H 1.48500 * 109.47018 * 330.00165 * 19 17 15 23 23 C 1.49293 * 105.79271 * 208.31557 * 14 12 11 24 24 C 1.52135 * 111.07935 * 71.70298 * 8 7 5 25 25 H 1.09008 * 109.46778 * 60.00804 * 1 2 3 26 26 H 1.08993 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47386 * 300.00696 * 1 2 3 28 28 H 1.07999 * 119.99829 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47152 * 90.00295 * 4 3 2 30 30 H 1.09001 * 109.46980 * 330.00395 * 4 3 2 31 31 H 1.09004 * 109.47113 * 210.00376 * 4 3 2 32 32 H 0.97001 * 119.99087 * 0.02562 * 7 5 3 33 33 H 1.09001 * 110.40311 * 34.92015 * 9 8 7 34 34 H 1.08995 * 110.40748 * 157.35399 * 9 8 7 35 35 H 1.08994 * 110.48344 * 234.05103 * 10 9 8 36 36 H 1.08997 * 109.84587 * 112.26766 * 10 9 8 37 37 H 1.09008 * 110.97012 * 217.24754 * 11 10 9 38 38 H 1.08997 * 110.97186 * 93.47694 * 11 10 9 39 39 H 0.96998 * 119.99700 * 179.97438 * 18 17 15 40 40 H 1.09004 * 110.04851 * 127.92785 * 23 14 12 41 41 H 1.08997 * 110.05005 * 249.40280 * 23 14 12 42 42 H 1.08997 * 111.14792 * 191.83690 * 24 8 7 43 43 H 1.08996 * 111.14746 * 316.06261 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1518 0.0006 6 8 4.2511 0.0986 0.0015 7 7 4.3169 2.3190 0.0000 8 6 5.7819 2.3189 0.0012 9 6 6.3245 1.7992 1.3135 10 6 6.3312 3.0291 2.2577 11 6 5.9427 4.2542 1.3685 12 6 6.3589 3.7844 0.0003 13 1 7.4454 3.7000 -0.0139 14 7 5.9439 4.2887 -1.2686 15 6 5.5413 5.5650 -1.5588 16 1 5.5151 6.3131 -0.7802 17 6 5.1668 5.8972 -2.8534 18 7 5.1981 4.9853 -3.8021 19 14 4.6169 7.6380 -3.2491 20 1 5.7944 8.4508 -3.6466 21 1 3.6378 7.6063 -4.3652 22 1 3.9812 8.2409 -2.0501 23 6 6.0403 3.1378 -2.2145 24 6 6.3301 1.8721 -1.3458 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.0470 -0.9353 0.0004 29 1 1.2365 2.7718 1.0270 30 1 0.4662 2.3264 -0.5147 31 1 2.0078 3.2164 -0.5144 32 1 3.8318 3.1590 -0.0003 33 1 5.6791 1.0140 1.7073 34 1 7.3410 1.4277 1.1841 35 1 7.3226 3.1754 2.6863 36 1 5.5953 2.8915 3.0499 37 1 6.5018 5.1426 1.6626 38 1 4.8694 4.4398 1.4076 39 1 4.9361 5.2174 -4.7067 40 1 5.0994 3.0152 -2.7511 41 1 6.8548 3.3012 -2.9202 42 1 7.3999 1.6713 -1.2879 43 1 5.7888 1.0042 -1.7223 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755698009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:26 Heat of formation + Delta-G solvation = -7.535275 kcal Electronic energy + Delta-G solvation = -23289.949036 eV Core-core repulsion = 20142.411124 eV Total energy + Delta-G solvation = -3147.537912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.98643 -39.76887 -36.42263 -36.14371 -34.46885 -33.58059 -31.69704 -29.96079 -28.57043 -27.40443 -26.91429 -25.95706 -23.31818 -22.12966 -21.28119 -20.18502 -19.50539 -18.35692 -17.97225 -17.40458 -16.47990 -16.27815 -15.91242 -15.71168 -15.65018 -15.18345 -14.37738 -14.25997 -14.19746 -14.08401 -13.59947 -13.36699 -13.27242 -13.04507 -12.98374 -12.86780 -12.84953 -12.63880 -12.15218 -12.12760 -12.11455 -12.02573 -11.81734 -11.56969 -11.36327 -11.05967 -10.74079 -10.58036 -10.05323 -9.76575 -8.87831 -7.83396 -5.19684 0.47761 1.48089 1.49175 1.57630 2.33165 2.42810 2.51044 3.08239 3.36553 3.70553 3.87056 3.89283 4.03148 4.08817 4.27057 4.32984 4.37856 4.40485 4.48896 4.56402 4.61127 4.74028 4.79035 4.86308 4.89753 4.93417 4.97761 5.04302 5.08122 5.09884 5.14366 5.21878 5.27454 5.48328 5.53229 5.54754 5.58796 5.65957 5.70201 5.84011 6.17716 6.73325 7.04207 7.37020 7.76705 8.49531 9.28500 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.006949 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.160255 B = 4028.502073 C = 4990.534341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 C -0.207 4.207 4 C -0.112 4.112 5 C 0.544 3.456 6 O -0.588 6.588 7 N -0.685 5.685 8 C 0.136 3.864 9 C -0.107 4.107 10 C -0.102 4.102 11 C -0.109 4.109 12 C 0.146 3.854 13 H 0.017 0.983 14 N -0.597 5.597 15 C -0.232 4.232 16 H 0.089 0.911 17 C -0.063 4.063 18 N -0.952 5.952 19 Si 0.974 3.026 20 H -0.291 1.291 21 H -0.299 1.299 22 H -0.264 1.264 23 C 0.192 3.808 24 C -0.128 4.128 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.403 0.597 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.245 0.755 40 H 0.029 0.971 41 H 0.001 0.999 42 H 0.079 0.921 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.742 -5.843 12.131 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.091 4.091 3 C -0.210 4.210 4 C -0.169 4.169 5 C 0.334 3.666 6 O -0.472 6.472 7 N -0.335 5.335 8 C 0.048 3.952 9 C -0.146 4.146 10 C -0.140 4.140 11 C -0.147 4.147 12 C 0.037 3.963 13 H 0.035 0.965 14 N -0.320 5.320 15 C -0.360 4.360 16 H 0.107 0.893 17 C -0.256 4.256 18 N -0.601 5.601 19 Si 0.803 3.197 20 H -0.219 1.219 21 H -0.226 1.226 22 H -0.188 1.188 23 C 0.068 3.932 24 C -0.167 4.167 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.240 0.760 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.019 0.981 42 H 0.097 0.903 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.362 -6.378 11.955 14.969 hybrid contribution -0.038 1.161 -1.193 1.665 sum -6.401 -5.217 10.762 13.565 Atomic orbital electron populations 1.21022 0.89382 1.04147 1.03492 1.23732 0.98061 0.96634 0.90700 1.21560 0.91521 0.98334 1.09541 1.20811 1.00150 0.92654 1.03243 1.18880 0.88911 0.83297 0.75528 1.90685 1.71065 1.32223 1.53188 1.45700 1.06392 1.08488 1.72892 1.21515 0.80292 0.99438 0.93992 1.21738 1.01200 0.98190 0.93436 1.22644 1.02728 0.91660 0.96952 1.21853 1.01190 0.98630 0.93073 1.21060 0.95951 0.91274 0.87990 0.96547 1.43793 1.77353 1.06823 1.04045 1.19401 1.36181 0.86109 0.94331 0.89282 1.25588 1.02637 1.01348 0.95993 1.70149 1.55050 1.33713 1.01147 0.85143 0.77233 0.79776 0.77564 1.21881 1.22596 1.18815 1.21653 0.97726 0.83600 0.90244 1.22633 1.00593 0.97399 0.96122 0.90000 0.90086 0.89299 0.87167 0.89438 0.89301 0.93425 0.76046 0.91901 0.90327 0.89562 0.90488 0.90814 0.91832 0.94580 0.95271 0.98092 0.90255 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 8.91 71.24 0.63 -1.32 16 2 C -0.07 -1.76 9.84 24.52 0.24 -1.51 16 3 C -0.21 -6.00 6.00 -18.70 -0.11 -6.12 16 4 C -0.11 -2.70 9.14 71.24 0.65 -2.05 16 5 C 0.54 19.94 7.06 86.57 0.61 20.55 16 6 O -0.59 -24.59 14.37 -4.09 -0.06 -24.65 16 7 N -0.69 -25.21 4.32 -423.21 -1.83 -27.04 16 8 C 0.14 5.08 0.42 4.33 0.00 5.08 16 9 C -0.11 -3.32 6.01 30.72 0.18 -3.13 16 10 C -0.10 -2.61 6.91 32.44 0.22 -2.39 16 11 C -0.11 -3.42 6.47 30.94 0.20 -3.22 16 12 C 0.15 5.80 2.61 46.48 0.12 5.93 16 13 H 0.02 0.70 7.99 -2.39 -0.02 0.68 16 14 N -0.60 -29.43 3.12 -668.58 -2.09 -31.52 16 15 C -0.23 -12.27 10.29 84.03 0.86 -11.40 16 16 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 17 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 18 N -0.95 -56.65 10.55 21.65 0.23 -56.42 16 19 Si 0.97 44.49 29.55 68.60 2.03 46.51 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 23 C 0.19 9.79 5.33 86.96 0.46 10.25 16 24 C -0.13 -5.42 6.22 31.43 0.20 -5.23 16 25 H 0.08 1.22 7.40 -2.38 -0.02 1.21 16 26 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.15 8.10 -2.39 -0.02 1.13 16 28 H 0.11 2.99 7.49 -2.91 -0.02 2.97 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 1.76 6.49 -2.39 -0.02 1.74 16 31 H 0.05 1.38 6.70 -2.38 -0.02 1.36 16 32 H 0.40 14.90 5.90 -92.71 -0.55 14.35 16 33 H 0.06 2.07 6.84 -2.39 -0.02 2.05 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 2.17 8.14 -2.38 -0.02 2.16 16 38 H 0.06 2.01 7.37 -2.39 -0.02 1.99 16 39 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.03 1.67 7.05 -2.38 -0.02 1.65 16 41 H 0.00 0.05 7.98 -2.39 -0.02 0.03 16 42 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.06 2.47 7.17 -2.39 -0.02 2.46 16 Total: -1.00 -67.08 333.54 3.48 -63.60 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.45 Total: 27.06 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 4.75 Total: 2.45 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -3.69 Total: -114.98 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.06 Total: -24.65 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -67.08 3.48 -63.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755698009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.063 kcal (2) G-P(sol) polarization free energy of solvation -67.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds