Wall clock time and date at job start Tue Mar 31 2020 00:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37196 * 119.99742 * 2 1 4 4 H 1.07999 * 119.99565 * 152.70905 * 3 2 1 5 5 C 1.38880 * 120.00063 * 332.69989 * 3 2 1 6 6 N 1.31477 * 119.99745 * 346.30913 * 5 3 2 7 7 Si 1.86797 * 119.99879 * 166.30465 * 5 3 2 8 8 H 1.48502 * 109.46887 * 84.98763 * 7 5 3 9 9 H 1.48495 * 109.47164 * 204.98235 * 7 5 3 10 10 H 1.48498 * 109.47139 * 324.98643 * 7 5 3 11 11 C 1.34771 * 120.00079 * 179.97438 * 2 1 3 12 12 O 1.21586 * 120.00222 * 179.97438 * 11 2 1 13 13 N 1.34777 * 120.00027 * 0.02562 * 11 2 1 14 14 C 1.46503 * 120.00098 * 179.97438 * 13 11 2 15 15 C 1.52997 * 109.47017 * 300.00054 * 14 13 11 16 16 C 1.52998 * 109.47130 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47266 * 299.99856 * 16 15 14 18 18 C 1.52997 * 109.47242 * 59.99567 * 17 16 15 19 19 C 1.53002 * 109.47035 * 60.00234 * 18 17 16 20 20 C 1.52999 * 109.47162 * 300.00265 * 19 18 17 21 21 C 1.52997 * 109.47362 * 59.99935 * 20 19 18 22 22 C 1.52995 * 109.47215 * 179.97438 * 14 13 11 23 23 C 1.52999 * 109.46971 * 59.99807 * 14 13 11 24 24 H 1.09000 * 109.47063 * 93.50691 * 1 2 3 25 25 H 1.09001 * 109.47455 * 213.50929 * 1 2 3 26 26 H 1.09007 * 109.47203 * 333.50969 * 1 2 3 27 27 H 0.97000 * 119.99739 * 180.02562 * 6 5 3 28 28 H 0.97003 * 119.99857 * 359.97438 * 13 11 2 29 29 H 1.09001 * 109.47054 * 299.99758 * 15 14 13 30 30 H 1.08997 * 109.47691 * 59.99746 * 15 14 13 31 31 H 1.09000 * 109.47282 * 179.97438 * 16 15 14 32 32 H 1.09003 * 109.46545 * 300.00144 * 17 16 15 33 33 H 1.08997 * 109.47482 * 180.02562 * 17 16 15 34 34 H 1.09001 * 109.47368 * 180.02562 * 18 17 16 35 35 H 1.08997 * 109.47687 * 179.97438 * 19 18 17 36 36 H 1.09007 * 109.46783 * 59.99862 * 19 18 17 37 37 H 1.09003 * 109.46792 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47450 * 59.99660 * 21 20 19 39 39 H 1.09001 * 109.47368 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47265 * 300.00201 * 22 14 13 41 41 H 1.09001 * 109.46892 * 60.00220 * 22 14 13 42 42 H 1.09004 * 109.47222 * 299.99523 * 23 14 13 43 43 H 1.09000 * 109.47175 * 60.00004 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1509 1.1882 0.0000 4 1 3.1407 1.2402 0.4289 5 6 1.5725 2.3239 -0.5516 6 7 0.5010 2.2157 -1.3059 7 14 2.3167 4.0052 -0.2218 8 1 3.4091 4.2623 -1.1943 9 1 1.2690 5.0474 -0.3674 10 1 2.8635 4.0423 1.1583 11 6 2.1388 -1.1671 0.0005 12 8 3.3547 -1.1672 0.0001 13 7 1.4650 -2.3344 0.0005 14 6 2.1975 -3.6031 0.0005 15 6 3.0771 -3.6841 -1.2487 16 6 3.8416 -5.0094 -1.2490 17 6 4.7212 -5.0911 0.0002 18 6 3.8417 -5.0100 1.2494 19 6 2.8470 -6.1725 1.2492 20 6 1.9674 -6.0909 0.0000 21 6 2.8469 -6.1720 -1.2493 22 6 1.2033 -4.7660 0.0012 23 6 3.0771 -3.6841 1.2497 24 1 -0.3633 -0.0629 -1.0257 25 1 -0.3634 -0.8568 0.5673 26 1 -0.3634 0.9198 0.4584 27 1 0.0973 3.0089 -1.6915 28 1 0.4949 -2.3344 0.0005 29 1 2.4504 -3.6264 -2.1387 30 1 3.7854 -2.8557 -1.2488 31 1 4.4679 -5.0673 -2.1392 32 1 5.4298 -4.2628 0.0003 33 1 5.2662 -6.0350 -0.0003 34 1 4.4684 -5.0678 2.1394 35 1 2.2206 -6.1151 2.1394 36 1 3.3917 -7.1168 1.2489 37 1 1.2591 -6.9194 -0.0004 38 1 3.3916 -7.1162 -1.2495 39 1 2.2203 -6.1134 -2.1393 40 1 0.5769 -4.7081 0.8914 41 1 0.5763 -4.7085 -0.8886 42 1 3.7855 -2.8556 1.2497 43 1 2.4505 -3.6263 2.1397 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:25 Heat of formation + Delta-G solvation = -39.516425 kcal Electronic energy + Delta-G solvation = -23541.032460 eV Core-core repulsion = 20392.107742 eV Total energy + Delta-G solvation = -3148.924719 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32270 -38.51933 -34.92128 -33.82311 -32.42857 -32.38274 -31.56420 -29.41337 -26.11618 -25.76155 -25.62938 -24.23245 -21.49311 -21.21180 -21.03977 -18.93422 -17.41320 -17.14905 -16.52781 -15.43565 -14.71629 -14.26947 -14.25805 -14.15898 -14.09705 -13.79257 -13.16870 -13.08178 -13.00169 -12.82837 -12.41260 -12.24075 -12.10744 -11.84978 -11.28749 -11.19950 -10.82980 -10.82139 -10.74255 -10.66147 -10.62264 -10.39108 -10.28594 -10.20274 -9.98511 -9.57191 -9.49189 -8.87039 -8.40962 -8.05079 -7.44742 -6.15669 -3.72643 3.27425 3.32983 3.37412 3.89404 4.37949 4.46644 4.68151 4.69494 4.88309 5.22469 5.26384 5.33398 5.37740 5.40074 5.45273 5.47573 5.52674 5.59587 5.61585 5.70667 5.82962 5.94140 5.98693 6.05677 6.11292 6.13446 6.23279 6.26130 6.31812 6.35218 6.45668 6.50666 6.69011 6.72844 6.85655 6.93208 6.97040 7.21774 7.57683 7.70597 7.82443 8.53118 8.91607 9.39589 9.69314 10.29330 10.92328 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035009 B = 0.004843 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.596876 B = 5779.889378 C = 6012.119346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.477 5.477 3 C -0.287 4.287 4 H 0.093 0.907 5 C 0.025 3.975 6 N -0.892 5.892 7 Si 0.923 3.077 8 H -0.279 1.279 9 H -0.286 1.286 10 H -0.272 1.272 11 C 0.668 3.332 12 O -0.615 6.615 13 N -0.757 5.757 14 C 0.209 3.791 15 C -0.122 4.122 16 C -0.083 4.083 17 C -0.106 4.106 18 C -0.082 4.082 19 C -0.108 4.108 20 C -0.079 4.079 21 C -0.109 4.109 22 C -0.114 4.114 23 C -0.122 4.122 24 H 0.048 0.952 25 H 0.018 0.982 26 H 0.068 0.932 27 H 0.263 0.737 28 H 0.385 0.615 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -16.233 2.557 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.201 5.201 3 C -0.416 4.416 4 H 0.110 0.890 5 C -0.177 4.177 6 N -0.532 5.532 7 Si 0.751 3.249 8 H -0.205 1.205 9 H -0.211 1.211 10 H -0.197 1.197 11 C 0.371 3.629 12 O -0.498 6.498 13 N -0.414 5.414 14 C 0.122 3.878 15 C -0.161 4.161 16 C -0.102 4.102 17 C -0.144 4.144 18 C -0.102 4.102 19 C -0.146 4.146 20 C -0.098 4.098 21 C -0.146 4.146 22 C -0.152 4.152 23 C -0.161 4.161 24 H 0.067 0.933 25 H 0.036 0.964 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.220 0.780 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.866 -16.025 2.462 16.236 hybrid contribution -0.438 0.961 -0.013 1.057 sum 0.427 -15.064 2.449 15.267 Atomic orbital electron populations 1.21282 0.81975 0.99053 1.00146 1.42730 1.04598 1.03356 1.69426 1.19398 1.02107 0.83963 1.36109 0.88965 1.25285 0.97161 0.99892 0.95321 1.70010 1.22275 1.29560 1.31393 0.86001 0.78373 0.81679 0.78890 1.20483 1.21126 1.19743 1.16068 0.85535 0.80134 0.81169 1.90649 1.11945 1.86079 1.61110 1.45389 1.08623 1.04357 1.83051 1.19706 0.91029 0.82114 0.94951 1.21954 0.99624 0.97677 0.96800 1.21047 0.96356 0.94972 0.97802 1.21516 0.97430 1.01148 0.94264 1.21050 0.96349 0.94942 0.97811 1.21574 0.97572 0.98078 0.97355 1.20971 0.96746 0.96724 0.95347 1.21577 0.97583 0.98075 0.97370 1.21748 0.97488 0.94110 1.01903 1.21982 0.99590 0.97744 0.96747 0.93329 0.96398 0.91322 0.92706 0.78037 0.92786 0.88962 0.91571 0.91642 0.92638 0.91609 0.92211 0.92304 0.91367 0.92302 0.92159 0.91793 0.91711 0.89009 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.73 8.39 59.84 0.50 3.23 16 2 N -0.48 -12.51 3.00 -127.61 -0.38 -12.89 16 3 C -0.29 -8.21 9.16 -14.91 -0.14 -8.35 16 4 H 0.09 2.75 7.51 -52.49 -0.39 2.36 16 5 C 0.03 0.69 5.01 -17.47 -0.09 0.60 16 6 N -0.89 -24.73 11.09 55.49 0.62 -24.11 16 7 Si 0.92 21.45 29.57 -169.99 -5.03 16.42 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 C 0.67 16.50 7.65 -86.92 -0.67 15.84 16 12 O -0.62 -16.81 12.29 5.29 0.07 -16.74 16 13 N -0.76 -14.71 4.97 -52.42 -0.26 -14.97 16 14 C 0.21 3.46 0.80 -131.82 -0.11 3.35 16 15 C -0.12 -2.09 4.40 -26.73 -0.12 -2.20 16 16 C -0.08 -1.12 3.19 -90.62 -0.29 -1.41 16 17 C -0.11 -1.40 5.19 -26.73 -0.14 -1.53 16 18 C -0.08 -1.09 3.20 -90.59 -0.29 -1.38 16 19 C -0.11 -1.20 5.19 -26.73 -0.14 -1.34 16 20 C -0.08 -0.88 3.19 -90.65 -0.29 -1.17 16 21 C -0.11 -1.23 5.19 -26.73 -0.14 -1.37 16 22 C -0.11 -1.49 4.58 -26.76 -0.12 -1.61 16 23 C -0.12 -2.03 4.40 -26.70 -0.12 -2.14 16 24 H 0.05 1.15 7.75 -51.93 -0.40 0.74 16 25 H 0.02 0.33 6.55 -51.93 -0.34 -0.01 16 26 H 0.07 1.65 7.09 -51.92 -0.37 1.28 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.39 6.75 6.28 -40.82 -0.26 6.50 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.95 6.16 -51.93 -0.32 1.63 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.88 6.16 -51.93 -0.32 1.56 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -30.73 313.48 -9.43 -40.17 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.03 Total: 6.90 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.14 Total: 0.51 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.03 Total: -51.98 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.07 Total: -16.74 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.73 -9.43 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.651 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds