Wall clock time and date at job start Tue Mar 31 2020 01:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 C 1.35305 * 125.86996 * 124.71440 * 4 3 2 6 6 C 1.35347 * 106.17852 * 179.90155 * 5 4 3 7 7 C 1.50703 * 126.75404 * 180.12347 * 6 5 4 8 8 N 1.46902 * 109.47024 * 95.24896 * 7 6 5 9 9 C 1.46900 * 111.00067 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.46969 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47551 * 299.99841 * 10 9 8 12 12 C 1.53006 * 109.47296 * 60.00297 * 10 9 8 13 13 C 1.53001 * 109.47179 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47421 * 180.02562 * 13 10 9 15 15 H 1.08001 * 119.99845 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00178 * 179.97438 * 14 13 10 17 17 N 1.31510 * 120.00419 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00016 * 0.02562 * 16 14 13 19 19 H 1.48490 * 109.47456 * 89.99559 * 18 16 14 20 20 H 1.48502 * 109.47252 * 210.00035 * 18 16 14 21 21 H 1.48506 * 109.47024 * 329.99788 * 18 16 14 22 22 N 1.33776 * 106.49548 * 0.35304 * 6 5 4 23 23 N 1.28639 * 108.88329 * 359.77293 * 22 6 5 24 24 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 25 25 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 26 26 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 27 27 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 28 28 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 29 29 H 1.08001 * 126.91155 * 0.02562 * 5 4 3 30 30 H 1.08998 * 109.47006 * 215.25166 * 7 6 5 31 31 H 1.08998 * 109.46888 * 335.25176 * 7 6 5 32 32 H 1.00901 * 110.99951 * 56.04321 * 8 7 6 33 33 H 1.08994 * 109.46992 * 299.99942 * 9 8 7 34 34 H 1.09001 * 109.47104 * 60.00122 * 9 8 7 35 35 H 1.09005 * 109.46753 * 60.00323 * 11 10 9 36 36 H 1.08995 * 109.47677 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47257 * 300.00192 * 11 10 9 38 38 H 1.09000 * 109.46880 * 59.99407 * 12 10 9 39 39 H 1.09001 * 109.46910 * 179.97438 * 12 10 9 40 40 H 1.08999 * 109.46567 * 299.99314 * 12 10 9 41 41 H 1.09008 * 109.46969 * 300.00217 * 13 10 9 42 42 H 1.08999 * 109.47434 * 59.99535 * 13 10 9 43 43 H 0.96999 * 120.00774 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 4.3231 1.5494 1.0652 6 6 4.7812 1.4946 2.3376 7 6 6.2071 1.6744 2.7912 8 7 6.4204 3.0708 3.1941 9 6 7.8029 3.2840 3.6428 10 6 7.9862 4.7466 4.0526 11 6 7.6933 5.6525 2.8550 12 6 7.0226 5.0813 5.1930 13 6 9.4262 4.9689 4.5193 14 6 9.6067 6.4093 4.9236 15 1 8.7771 7.0974 4.8550 16 6 10.8305 6.8486 5.3821 17 7 10.9882 8.1057 5.7345 18 14 12.2653 5.6583 5.5014 19 1 13.0209 5.6639 4.2232 20 1 13.1629 6.0743 6.6089 21 1 11.7526 4.2901 5.7673 22 7 3.7202 1.2445 3.1129 23 7 2.6736 1.1553 2.3702 24 1 -0.5400 -0.9353 0.0045 25 1 -0.5400 0.9353 -0.0045 26 1 1.8500 -0.9353 0.0046 27 1 2.6252 1.4004 -0.9293 28 1 1.3582 2.1318 0.0846 29 1 4.9050 1.7303 0.1735 30 1 6.4044 1.0175 3.6383 31 1 6.8828 1.4251 1.9730 32 1 5.7619 3.3460 3.9074 33 1 8.0117 2.6384 4.4957 34 1 8.4894 3.0460 2.8302 35 1 6.6674 5.4943 2.5221 36 1 7.8234 6.6945 3.1471 37 1 8.3798 5.4141 2.0426 38 1 7.2313 4.4359 6.0462 39 1 7.1536 6.1232 5.4853 40 1 5.9968 4.9232 4.8601 41 1 9.6354 4.3234 5.3725 42 1 10.1125 4.7305 3.7067 43 1 11.8491 8.4147 6.0574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424166317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:15 Heat of formation + Delta-G solvation = 109.333742 kcal Electronic energy + Delta-G solvation = -21057.907835 eV Core-core repulsion = 17947.730495 eV Total energy + Delta-G solvation = -3110.177340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.35825 -37.79338 -36.46372 -34.68946 -32.94336 -32.24940 -31.01382 -27.85797 -27.52518 -26.40115 -26.30839 -24.24043 -22.36060 -21.85246 -21.38810 -20.38876 -17.99632 -17.46635 -16.75272 -16.53914 -15.69898 -15.57748 -14.94190 -14.74412 -14.21425 -14.11841 -13.89333 -13.30193 -13.13212 -12.80540 -12.59938 -12.40144 -12.16010 -11.98199 -11.82009 -11.53662 -11.08128 -10.96727 -10.87111 -10.80985 -10.46165 -10.36629 -10.31208 -10.08368 -9.75106 -9.65183 -9.41889 -9.17435 -8.86246 -8.46353 -8.12906 -5.96478 -3.92417 1.35369 1.48789 2.36573 2.44225 3.34841 3.42493 3.46173 3.97823 4.13073 4.31773 4.49193 4.51451 4.60147 4.83629 4.86781 4.96192 5.24447 5.35408 5.36573 5.52300 5.62139 5.70340 5.84052 5.92059 5.93561 5.96992 6.05442 6.20550 6.29208 6.41356 6.47573 6.64929 6.74665 6.84118 7.12019 7.17767 7.22590 7.31968 7.37660 7.50243 7.65418 7.89234 8.41865 8.63752 9.09758 9.66630 11.16645 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.047352 B = 0.002727 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.179079 B =10264.280702 C =10404.287450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.181 4.181 3 C 0.146 3.854 4 N -0.293 5.293 5 C -0.034 4.034 6 C -0.012 4.012 7 C 0.143 3.857 8 N -0.682 5.682 9 C 0.067 3.933 10 C -0.048 4.048 11 C -0.117 4.117 12 C -0.132 4.132 13 C -0.005 4.005 14 C -0.506 4.506 15 H 0.078 0.922 16 C 0.063 3.937 17 N -0.906 5.906 18 Si 0.876 3.124 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.267 1.267 22 N -0.266 5.266 23 N -0.084 5.084 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.190 0.810 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.345 0.655 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.013 0.987 42 H 0.010 0.990 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.354 -16.488 -14.336 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.200 4.200 3 C 0.025 3.975 4 N -0.087 5.087 5 C -0.185 4.185 6 C -0.150 4.150 7 C 0.012 3.988 8 N -0.315 5.315 9 C -0.061 4.061 10 C -0.048 4.048 11 C -0.175 4.175 12 C -0.189 4.189 13 C -0.042 4.042 14 C -0.544 4.544 15 H 0.096 0.904 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.704 3.296 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.191 1.191 22 N -0.133 5.133 23 N -0.063 5.063 24 H 0.126 0.874 25 H 0.122 0.878 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.121 0.879 29 H 0.207 0.793 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.257 -16.425 -13.931 28.234 hybrid contribution 1.685 -0.782 0.024 1.858 sum -16.572 -17.208 -13.907 27.643 Atomic orbital electron populations 1.24001 0.95467 1.02866 0.96272 1.22851 0.96397 0.97321 1.03433 1.21152 0.92141 0.98272 0.85917 1.47366 1.07255 1.46221 1.07864 1.23412 0.84462 1.09020 1.01616 1.21938 0.97120 1.05854 0.90054 1.20092 0.87647 0.90922 1.00158 1.60597 1.06027 1.18509 1.46371 1.22154 0.88142 0.97811 0.98018 1.20409 0.97521 0.91561 0.95354 1.21612 0.99376 1.00037 0.96442 1.21788 0.96675 1.03031 0.97398 1.19634 0.91118 0.97949 0.95535 1.21143 0.97680 0.93446 1.42092 0.90435 1.25028 0.98630 0.94865 0.95184 1.69907 1.24467 1.14956 1.45265 0.86839 0.82830 0.82240 0.77701 1.20480 1.21627 1.19136 1.75081 0.95737 1.16226 1.26269 1.78291 1.21479 1.19424 0.87080 0.87384 0.87831 0.86505 0.86789 0.87936 0.79253 0.93653 0.89527 0.83520 0.95602 0.91417 0.93763 0.92175 0.94220 0.94037 0.91191 0.94557 0.96885 0.97129 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 14.32 29.01 0.42 -0.26 16 2 C -0.18 -1.00 9.63 -36.03 -0.35 -1.35 16 3 C 0.15 0.80 6.90 -5.19 -0.04 0.77 16 4 N -0.29 -2.92 3.43 -62.44 -0.21 -3.13 16 5 C -0.03 -0.34 11.50 -17.05 -0.20 -0.53 16 6 C -0.01 -0.15 6.76 -82.77 -0.56 -0.71 16 7 C 0.14 1.76 6.25 -4.97 -0.03 1.73 16 8 N -0.68 -9.89 5.70 -115.06 -0.66 -10.54 16 9 C 0.07 1.10 4.65 -3.83 -0.02 1.08 16 10 C -0.05 -0.93 0.60 -154.51 -0.09 -1.03 16 11 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 12 C -0.13 -2.51 7.89 37.16 0.29 -2.22 16 13 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 14 C -0.51 -14.04 8.20 -34.44 -0.28 -14.32 16 15 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 16 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 17 N -0.91 -27.96 13.96 55.43 0.77 -27.19 16 18 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 N -0.27 -3.99 12.41 33.29 0.41 -3.57 16 23 N -0.08 -1.13 12.92 60.35 0.78 -0.35 16 24 H 0.11 0.39 8.06 -52.49 -0.42 -0.03 16 25 H 0.10 0.37 7.84 -52.49 -0.41 -0.04 16 26 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 27 H 0.11 0.30 8.07 -51.93 -0.42 -0.12 16 28 H 0.10 0.47 7.79 -51.93 -0.40 0.07 16 29 H 0.19 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.35 5.30 6.77 -39.29 -0.27 5.04 16 33 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 36 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.50 6.62 -51.93 -0.34 1.15 16 40 H 0.04 0.61 6.57 -51.93 -0.34 0.27 16 41 H 0.01 0.31 7.20 -51.92 -0.37 -0.06 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -33.19 349.89 -6.01 -39.20 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.97 Total: 0.36 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.74 Total: -17.25 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 1.10 Total: -44.79 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.19 -6.01 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424166317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.534 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds