Wall clock time and date at job start Tue Mar 31 2020 01:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 C 1.35305 * 125.86996 * 124.71440 * 4 3 2 6 6 C 1.35347 * 106.17852 * 179.90155 * 5 4 3 7 7 C 1.50703 * 126.75404 * 180.12347 * 6 5 4 8 8 N 1.46902 * 109.47024 * 95.24896 * 7 6 5 9 9 C 1.46900 * 111.00067 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.46969 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47551 * 299.99841 * 10 9 8 12 12 C 1.53006 * 109.47296 * 60.00297 * 10 9 8 13 13 C 1.53001 * 109.47179 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47421 * 180.02562 * 13 10 9 15 15 H 1.08001 * 119.99845 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00178 * 179.97438 * 14 13 10 17 17 N 1.31510 * 120.00419 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00016 * 0.02562 * 16 14 13 19 19 H 1.48490 * 109.47456 * 89.99559 * 18 16 14 20 20 H 1.48502 * 109.47252 * 210.00035 * 18 16 14 21 21 H 1.48506 * 109.47024 * 329.99788 * 18 16 14 22 22 N 1.33776 * 106.49548 * 0.35304 * 6 5 4 23 23 N 1.28639 * 108.88329 * 359.77293 * 22 6 5 24 24 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 25 25 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 26 26 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 27 27 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 28 28 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 29 29 H 1.08001 * 126.91155 * 0.02562 * 5 4 3 30 30 H 1.08998 * 109.47006 * 215.25166 * 7 6 5 31 31 H 1.08998 * 109.46888 * 335.25176 * 7 6 5 32 32 H 1.00901 * 110.99951 * 56.04321 * 8 7 6 33 33 H 1.08994 * 109.46992 * 299.99942 * 9 8 7 34 34 H 1.09001 * 109.47104 * 60.00122 * 9 8 7 35 35 H 1.09005 * 109.46753 * 60.00323 * 11 10 9 36 36 H 1.08995 * 109.47677 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47257 * 300.00192 * 11 10 9 38 38 H 1.09000 * 109.46880 * 59.99407 * 12 10 9 39 39 H 1.09001 * 109.46910 * 179.97438 * 12 10 9 40 40 H 1.08999 * 109.46567 * 299.99314 * 12 10 9 41 41 H 1.09008 * 109.46969 * 300.00217 * 13 10 9 42 42 H 1.08999 * 109.47434 * 59.99535 * 13 10 9 43 43 H 0.96999 * 120.00774 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 4.3231 1.5494 1.0652 6 6 4.7812 1.4946 2.3376 7 6 6.2071 1.6744 2.7912 8 7 6.4204 3.0708 3.1941 9 6 7.8029 3.2840 3.6428 10 6 7.9862 4.7466 4.0526 11 6 7.6933 5.6525 2.8550 12 6 7.0226 5.0813 5.1930 13 6 9.4262 4.9689 4.5193 14 6 9.6067 6.4093 4.9236 15 1 8.7771 7.0974 4.8550 16 6 10.8305 6.8486 5.3821 17 7 10.9882 8.1057 5.7345 18 14 12.2653 5.6583 5.5014 19 1 13.0209 5.6639 4.2232 20 1 13.1629 6.0743 6.6089 21 1 11.7526 4.2901 5.7673 22 7 3.7202 1.2445 3.1129 23 7 2.6736 1.1553 2.3702 24 1 -0.5400 -0.9353 0.0045 25 1 -0.5400 0.9353 -0.0045 26 1 1.8500 -0.9353 0.0046 27 1 2.6252 1.4004 -0.9293 28 1 1.3582 2.1318 0.0846 29 1 4.9050 1.7303 0.1735 30 1 6.4044 1.0175 3.6383 31 1 6.8828 1.4251 1.9730 32 1 5.7619 3.3460 3.9074 33 1 8.0117 2.6384 4.4957 34 1 8.4894 3.0460 2.8302 35 1 6.6674 5.4943 2.5221 36 1 7.8234 6.6945 3.1471 37 1 8.3798 5.4141 2.0426 38 1 7.2313 4.4359 6.0462 39 1 7.1536 6.1232 5.4853 40 1 5.9968 4.9232 4.8601 41 1 9.6354 4.3234 5.3725 42 1 10.1125 4.7305 3.7067 43 1 11.8491 8.4147 6.0574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424166317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:13 Heat of formation + Delta-G solvation = 86.771904 kcal Electronic energy + Delta-G solvation = -21058.886190 eV Core-core repulsion = 17947.730495 eV Total energy + Delta-G solvation = -3111.155695 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.17605 -39.22914 -37.08987 -35.90913 -34.31641 -33.53842 -32.07790 -29.65631 -28.18205 -27.90568 -27.54070 -25.66256 -23.55485 -23.09739 -22.21676 -20.88416 -19.48725 -18.84088 -18.25236 -17.30102 -16.74060 -16.35118 -16.15738 -15.82417 -15.59849 -15.38015 -14.89102 -14.53437 -14.45341 -14.24193 -13.95175 -13.53622 -13.45704 -13.10463 -12.76975 -12.72408 -12.50706 -12.39724 -12.35427 -12.21132 -12.05080 -11.79828 -11.68522 -11.32969 -11.10446 -10.96862 -10.80492 -10.67378 -10.53138 -10.16354 -9.26243 -8.19108 -6.19412 0.68853 0.95580 1.38304 1.40321 1.50174 1.51468 1.86162 2.42166 3.15862 3.28721 3.56622 3.66476 3.83831 3.97556 4.14108 4.16919 4.21780 4.27477 4.34790 4.52672 4.58753 4.68985 4.78448 4.83665 4.92242 4.96137 5.01720 5.06586 5.12106 5.18451 5.21148 5.38987 5.48295 5.54583 5.55215 5.58277 5.64617 5.77079 5.78228 5.84398 6.12789 6.42086 6.46354 6.88098 7.42822 7.55872 8.97171 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.047352 B = 0.002727 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.179079 B =10264.280702 C =10404.287450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.196 4.196 3 C 0.136 3.864 4 N -0.284 5.284 5 C -0.017 4.017 6 C -0.035 4.035 7 C 0.148 3.852 8 N -0.680 5.680 9 C 0.079 3.921 10 C -0.048 4.048 11 C -0.108 4.108 12 C -0.125 4.125 13 C -0.003 4.003 14 C -0.502 4.502 15 H 0.042 0.958 16 C -0.003 4.003 17 N -0.956 5.956 18 Si 0.943 3.057 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.248 1.248 22 N -0.307 5.307 23 N -0.116 5.116 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.149 0.851 28 H 0.112 0.888 29 H 0.230 0.770 30 H 0.039 0.961 31 H 0.111 0.889 32 H 0.338 0.662 33 H 0.027 0.973 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.025 0.975 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.035 0.965 40 H 0.058 0.942 41 H 0.012 0.988 42 H 0.017 0.983 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.465 -18.756 -16.512 30.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.214 4.214 3 C 0.018 3.982 4 N -0.078 5.078 5 C -0.170 4.170 6 C -0.174 4.174 7 C 0.017 3.983 8 N -0.312 5.312 9 C -0.049 4.049 10 C -0.048 4.048 11 C -0.165 4.165 12 C -0.183 4.183 13 C -0.041 4.041 14 C -0.541 4.541 15 H 0.060 0.940 16 C -0.198 4.198 17 N -0.598 5.598 18 Si 0.768 3.232 19 H -0.193 1.193 20 H -0.217 1.217 21 H -0.172 1.172 22 N -0.174 5.174 23 N -0.094 5.094 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.166 0.834 28 H 0.130 0.870 29 H 0.246 0.754 30 H 0.057 0.943 31 H 0.129 0.871 32 H 0.157 0.843 33 H 0.045 0.955 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.031 0.969 42 H 0.036 0.964 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.412 -18.721 -16.122 30.813 hybrid contribution 1.570 -0.036 0.624 1.690 sum -16.842 -18.757 -15.498 29.592 Atomic orbital electron populations 1.24203 0.95371 1.03735 0.94918 1.22855 0.96741 0.97198 1.04644 1.21599 0.92394 0.98514 0.85697 1.47739 1.08014 1.44286 1.07749 1.23984 0.84490 1.06549 1.01928 1.22107 0.96873 1.07304 0.91107 1.20124 0.88248 0.89189 1.00722 1.60574 1.04668 1.20287 1.45719 1.21912 0.89616 0.94859 0.98561 1.20343 0.94949 0.94222 0.95305 1.21499 1.00689 0.97845 0.96460 1.21704 0.98150 1.00815 0.97619 1.19602 0.94093 0.94772 0.95630 1.21439 0.96483 0.95256 1.40890 0.93979 1.25969 1.01978 0.96619 0.95251 1.70070 1.25311 1.17264 1.47187 0.85758 0.79021 0.80477 0.77962 1.19346 1.21711 1.17167 1.75016 0.96785 1.17677 1.27919 1.78205 1.21517 1.21110 0.88607 0.86721 0.86867 0.87168 0.83357 0.86954 0.75369 0.94286 0.87116 0.84284 0.95485 0.90151 0.91879 0.95601 0.93602 0.93874 0.94536 0.92302 0.96920 0.96418 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 14.32 67.78 0.97 -0.10 16 2 C -0.20 -1.81 9.63 25.64 0.25 -1.56 16 3 C 0.14 1.12 6.90 85.63 0.59 1.71 16 4 N -0.28 -4.99 3.43 -351.47 -1.21 -6.20 16 5 C -0.02 -0.29 11.50 83.49 0.96 0.67 16 6 C -0.03 -0.81 6.76 41.60 0.28 -0.53 16 7 C 0.15 3.24 6.25 85.56 0.53 3.78 16 8 N -0.68 -17.94 5.70 -517.94 -2.95 -20.90 16 9 C 0.08 2.37 4.65 86.30 0.40 2.77 16 10 C -0.05 -1.80 0.60 -52.18 -0.03 -1.83 16 11 C -0.11 -4.04 8.06 71.98 0.58 -3.46 16 12 C -0.13 -4.78 7.89 71.98 0.57 -4.21 16 13 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 14 C -0.50 -28.46 8.20 25.60 0.21 -28.25 16 15 H 0.04 2.63 5.92 -2.91 -0.02 2.61 16 16 C 0.00 -0.17 5.47 84.66 0.46 0.30 16 17 N -0.96 -60.71 13.96 21.45 0.30 -60.41 16 18 Si 0.94 44.83 27.47 68.60 1.88 46.71 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 22 N -0.31 -9.00 12.41 -48.60 -0.60 -9.60 16 23 N -0.12 -3.03 12.92 37.02 0.48 -2.55 16 24 H 0.11 0.66 8.06 -2.91 -0.02 0.64 16 25 H 0.11 0.59 7.84 -2.91 -0.02 0.57 16 26 H 0.11 1.14 8.06 -2.91 -0.02 1.12 16 27 H 0.15 0.17 8.07 -2.39 -0.02 0.15 16 28 H 0.11 0.73 7.79 -2.39 -0.02 0.71 16 29 H 0.23 1.74 8.06 -2.91 -0.02 1.71 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.34 9.76 6.77 -89.69 -0.61 9.16 16 33 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.06 2.11 7.60 -2.38 -0.02 2.09 16 36 H 0.02 1.12 6.62 -2.39 -0.02 1.10 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.04 1.60 6.62 -2.39 -0.02 1.59 16 40 H 0.06 1.95 6.57 -2.39 -0.02 1.93 16 41 H 0.01 0.58 7.20 -2.38 -0.02 0.56 16 42 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 43 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -74.17 349.89 4.09 -70.08 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.32 Total: 13.62 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 5.87 Total: -30.76 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -3.98 Total: -99.66 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -74.17 4.09 -70.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424166317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.854 kcal (2) G-P(sol) polarization free energy of solvation -74.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds