Wall clock time and date at job start Tue Mar 31 2020 00:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99419 * 2 1 4 4 O 1.21284 * 120.00167 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00461 * 0.02562 * 3 2 1 6 6 C 1.53889 * 113.58975 * 277.66615 * 5 3 2 7 7 C 1.53261 * 86.88164 * 220.42531 * 6 5 3 8 8 C 1.52452 * 128.58175 * 165.11141 * 7 6 5 9 9 C 1.52458 * 128.57901 * 245.05546 * 7 6 5 10 10 C 1.53258 * 87.69391 * 25.08153 * 7 6 5 11 11 C 1.46497 * 120.00432 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.91399 * 170.51224 * 11 2 1 13 13 C 1.55151 * 111.00623 * 46.60663 * 11 2 1 14 14 C 1.54320 * 102.94334 * 277.43135 * 13 11 2 15 15 N 1.47019 * 107.27300 * 337.80742 * 14 13 11 16 16 C 1.36935 * 125.65109 * 178.98048 * 15 14 13 17 17 H 1.07991 * 120.00415 * 179.97438 * 16 15 14 18 18 C 1.38812 * 119.99793 * 359.97246 * 16 15 14 19 19 N 1.31620 * 120.00271 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47280 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47282 * 120.00056 * 20 18 16 23 23 H 1.48499 * 109.47183 * 239.99765 * 20 18 16 24 24 C 1.47425 * 108.70107 * 358.94039 * 15 14 13 25 25 H 1.09001 * 109.47209 * 263.94367 * 1 2 3 26 26 H 1.09003 * 109.47593 * 23.95065 * 1 2 3 27 27 H 1.09009 * 109.46707 * 143.94898 * 1 2 3 28 28 H 1.09005 * 112.82572 * 48.88023 * 5 3 2 29 29 H 1.09001 * 113.64419 * 334.92398 * 6 5 3 30 30 H 1.08999 * 113.64871 * 105.92423 * 6 5 3 31 31 H 1.09001 * 117.51326 * 225.04368 * 8 7 6 32 32 H 1.08998 * 117.51782 * 10.15274 * 8 7 6 33 33 H 1.08998 * 117.51783 * 349.84703 * 9 7 6 34 34 H 1.08997 * 117.51026 * 134.91223 * 9 7 6 35 35 H 1.08998 * 113.64602 * 220.42154 * 10 7 6 36 36 H 1.08999 * 113.72787 * 89.42090 * 10 7 6 37 37 H 1.09004 * 110.72047 * 159.06631 * 13 11 2 38 38 H 1.09002 * 110.71687 * 35.79726 * 13 11 2 39 39 H 1.09006 * 109.88139 * 218.38406 * 14 13 11 40 40 H 1.09000 * 109.88413 * 97.22891 * 14 13 11 41 41 H 0.96997 * 120.00693 * 180.02562 * 19 18 16 42 42 H 1.08994 * 110.36357 * 142.97053 * 24 15 14 43 43 H 1.09005 * 110.36872 * 265.29004 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1387 1.1672 0.0000 4 8 3.3516 1.1674 0.0005 5 6 1.3852 2.4724 0.0006 6 6 0.9138 2.9120 -1.3968 7 6 1.3112 4.3355 -0.9913 8 6 1.5025 5.5590 -1.8805 9 6 0.4160 5.5549 -0.8015 10 6 2.2986 3.7109 0.0006 11 6 2.1976 -1.2686 -0.0006 12 1 3.2618 -1.1033 -0.1683 13 6 1.6140 -2.2474 -1.0535 14 6 0.4132 -2.8745 -0.3144 15 7 0.6572 -2.7172 1.1269 16 6 -0.1836 -3.1249 2.1279 17 1 0.0879 -2.9632 3.1605 18 6 -1.3851 -3.7459 1.8152 19 7 -1.7163 -3.9425 0.5566 20 14 -2.5324 -4.3013 3.1806 21 1 -1.9341 -3.9651 4.4974 22 1 -3.8395 -3.6105 3.0406 23 1 -2.7363 -5.7694 3.0894 24 6 1.9576 -2.0489 1.3160 25 1 -0.3634 -0.1084 1.0219 26 1 -0.3634 0.9392 -0.4172 27 1 -0.3633 -0.8309 -0.6049 28 1 0.6019 2.5080 0.7578 29 1 1.5155 2.5047 -2.2093 30 1 -0.1570 2.7857 -1.5568 31 1 2.3838 6.1760 -1.7052 32 1 1.1809 5.4819 -2.9191 33 1 -0.6201 5.4751 -1.1305 34 1 0.5824 6.1687 0.0837 35 1 2.3378 4.2251 0.9608 36 1 3.2862 3.5256 -0.4216 37 1 2.3458 -3.0109 -1.3177 38 1 1.2818 -1.7070 -1.9399 39 1 0.3358 -3.9328 -0.5640 40 1 -0.5050 -2.3577 -0.5935 41 1 -2.5560 -4.3761 0.3380 42 1 1.9117 -1.3621 2.1611 43 1 2.7450 -2.7871 1.4684 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033402449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:58 Heat of formation + Delta-G solvation = 51.825285 kcal Electronic energy + Delta-G solvation = -22562.815932 eV Core-core repulsion = 19417.852087 eV Total energy + Delta-G solvation = -3144.963845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.49857 -38.79894 -37.18643 -34.25821 -33.62731 -32.01066 -29.26668 -28.14273 -25.92596 -25.83445 -24.96596 -23.83011 -22.61596 -20.33716 -20.09397 -18.50375 -18.33394 -17.12158 -16.91395 -15.84175 -15.58439 -15.30254 -14.74283 -14.65872 -14.12341 -13.79447 -13.33143 -12.81891 -12.69108 -12.36641 -12.05843 -11.95807 -11.85519 -11.70515 -11.64873 -11.58063 -11.44655 -10.95173 -10.91763 -10.70871 -10.45629 -10.38594 -10.17745 -10.12361 -9.91572 -9.79716 -9.66980 -9.20426 -8.68453 -8.11119 -6.81909 -5.75045 -3.07560 2.91121 3.35908 3.37710 3.43888 3.45472 3.65128 4.21546 4.46200 4.47566 4.65320 4.69071 4.75626 5.06156 5.31199 5.41043 5.45123 5.45654 5.50450 5.54777 5.62169 5.66841 5.69001 5.75405 5.77523 5.88552 5.90865 5.95358 6.12681 6.16228 6.22283 6.27603 6.37852 6.49433 6.52651 6.62706 6.69459 7.11562 7.52936 7.54796 7.77903 7.90101 8.21519 8.54549 9.19119 9.78899 10.45285 11.36770 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024535 B = 0.004368 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.939281 B = 6408.295754 C = 6908.621085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.586 5.586 3 C 0.520 3.480 4 O -0.556 6.556 5 C -0.128 4.128 6 C -0.080 4.080 7 C -0.161 4.161 8 C -0.167 4.167 9 C -0.152 4.152 10 C -0.075 4.075 11 C 0.123 3.877 12 H 0.097 0.903 13 C -0.156 4.156 14 C 0.173 3.827 15 N -0.602 5.602 16 C -0.224 4.224 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.923 5.923 20 Si 0.909 3.091 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.126 3.874 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.055 0.945 41 H 0.251 0.749 42 H 0.041 0.959 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 15.040 -5.090 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.317 5.317 3 C 0.308 3.692 4 O -0.436 6.436 5 C -0.150 4.150 6 C -0.118 4.118 7 C -0.162 4.162 8 C -0.204 4.204 9 C -0.189 4.189 10 C -0.113 4.113 11 C 0.018 3.982 12 H 0.115 0.885 13 C -0.195 4.195 14 C 0.048 3.952 15 N -0.329 5.329 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.571 5.571 20 Si 0.740 3.260 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.001 4.001 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.130 0.870 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.183 14.902 -5.053 16.282 hybrid contribution -0.870 -0.477 0.776 1.260 sum 3.313 14.424 -4.277 15.406 Atomic orbital electron populations 1.22154 0.78609 1.02502 1.03796 1.47684 1.07587 1.05171 1.71211 1.20414 0.87719 0.85114 0.75956 1.90625 1.14030 1.87462 1.51452 1.22573 0.99985 0.92391 1.00008 1.22399 1.01397 0.92518 0.95438 1.22169 1.02210 0.89718 1.02054 1.22787 1.00741 1.00680 0.96161 1.22780 0.96094 0.99166 1.00825 1.22370 0.97553 0.93162 0.98182 1.22246 0.96037 0.82598 0.97294 0.88479 1.23248 1.00567 0.98012 0.97702 1.21332 0.92536 0.98679 0.82611 1.44484 1.17270 1.68950 1.02213 1.19084 0.97546 1.31626 0.86930 0.90544 1.24751 0.98037 1.01152 0.96385 1.69955 1.23690 1.48273 1.15145 0.86075 0.80785 0.78132 0.80964 1.20606 1.21811 1.21822 1.21905 0.89575 0.93862 0.94769 0.91776 0.92529 0.88806 0.86986 0.89341 0.90583 0.88764 0.88773 0.88596 0.88643 0.91190 0.88367 0.91274 0.91815 0.93993 0.92727 0.93842 0.94059 0.95408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 8.94 59.85 0.53 1.74 16 2 N -0.59 -10.19 2.91 -171.48 -0.50 -10.69 16 3 C 0.52 8.70 7.20 -10.98 -0.08 8.62 16 4 O -0.56 -10.87 15.30 5.55 0.08 -10.78 16 5 C -0.13 -1.67 2.75 -90.84 -0.25 -1.92 16 6 C -0.08 -0.90 6.97 -26.13 -0.18 -1.08 16 7 C -0.16 -1.67 3.08 -154.80 -0.48 -2.14 16 8 C -0.17 -1.47 10.53 -26.95 -0.28 -1.75 16 9 C -0.15 -1.31 10.53 -26.94 -0.28 -1.60 16 10 C -0.08 -0.90 7.43 -26.13 -0.19 -1.09 16 11 C 0.12 2.29 3.64 -65.79 -0.24 2.05 16 12 H 0.10 1.81 7.07 -51.93 -0.37 1.44 16 13 C -0.16 -2.88 6.07 -24.90 -0.15 -3.03 16 14 C 0.17 3.96 4.35 -3.07 -0.01 3.94 16 15 N -0.60 -14.71 2.87 -170.08 -0.49 -15.19 16 16 C -0.22 -6.01 10.28 -15.06 -0.15 -6.16 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -25.87 10.31 55.49 0.57 -25.30 16 20 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.13 2.66 6.76 -2.53 -0.02 2.64 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.06 0.77 5.56 -51.93 -0.29 0.48 16 27 H 0.09 1.76 4.19 -51.92 -0.22 1.54 16 28 H 0.11 1.37 7.77 -51.93 -0.40 0.97 16 29 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 30 H 0.08 0.77 7.71 -51.93 -0.40 0.37 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.31 7.42 -51.93 -0.39 0.92 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.08 8.07 -51.93 -0.42 0.67 16 39 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 40 H 0.06 1.33 5.10 -51.93 -0.26 1.07 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 334.17 15.07 5.04 5.04 Total: -1.00 -29.74 334.17 -9.11 -38.85 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.91 Total: 1.59 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.89 Total: -0.07 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.41 Total: -51.18 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.74 -9.11 -38.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033402449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.676 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds