Wall clock time and date at job start Tue Mar 31 2020 00:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47107 * 2 1 4 4 C 1.53002 * 109.47482 * 305.06989 * 3 2 1 5 5 C 1.53000 * 109.46993 * 294.22841 * 4 3 2 6 6 C 1.53004 * 109.47177 * 65.07119 * 3 2 1 7 7 N 1.46896 * 109.46983 * 64.73750 * 6 3 2 8 8 C 1.46901 * 111.00043 * 195.85724 * 7 6 3 9 9 C 1.50695 * 109.47395 * 66.39863 * 8 7 6 10 10 H 1.08006 * 120.00065 * 4.74050 * 9 8 7 11 11 C 1.37878 * 120.00206 * 184.74444 * 9 8 7 12 12 N 1.31513 * 119.99785 * 176.70778 * 11 9 8 13 13 Si 1.86792 * 119.99956 * 356.71079 * 11 9 8 14 14 H 1.48507 * 109.47050 * 91.95132 * 13 11 9 15 15 H 1.48501 * 109.47267 * 211.94912 * 13 11 9 16 16 H 1.48496 * 109.47279 * 331.95184 * 13 11 9 17 17 C 1.46900 * 111.00249 * 71.90389 * 7 6 3 18 18 C 1.50698 * 109.47086 * 194.21178 * 17 7 6 19 19 C 1.34857 * 125.89264 * 94.25874 * 18 17 7 20 20 C 1.40888 * 107.41615 * 179.97438 * 19 18 17 21 21 C 1.34853 * 107.42062 * 359.97438 * 20 19 18 22 22 N 1.36342 * 125.89075 * 273.94256 * 18 17 7 23 23 C 1.46494 * 125.63452 * 0.02562 * 22 18 17 24 24 H 1.09004 * 109.47010 * 305.96850 * 1 2 3 25 25 H 1.08994 * 109.47551 * 65.96759 * 1 2 3 26 26 H 1.08997 * 109.47031 * 185.97062 * 1 2 3 27 27 H 1.09002 * 109.46463 * 240.00082 * 2 1 3 28 28 H 1.09000 * 109.46894 * 119.99910 * 2 1 3 29 29 H 1.09000 * 109.47036 * 185.07287 * 3 2 1 30 30 H 1.09007 * 109.46771 * 54.22549 * 4 3 2 31 31 H 1.08999 * 109.47324 * 174.22315 * 4 3 2 32 32 H 1.09003 * 109.46869 * 185.61971 * 5 4 3 33 33 H 1.08993 * 109.46775 * 305.61462 * 5 4 3 34 34 H 1.09000 * 109.47225 * 65.62091 * 5 4 3 35 35 H 1.08994 * 109.47009 * 304.73513 * 6 3 2 36 36 H 1.09007 * 109.46892 * 184.73378 * 6 3 2 37 37 H 1.08997 * 109.47534 * 186.40218 * 8 7 6 38 38 H 1.09002 * 109.46726 * 306.39884 * 8 7 6 39 39 H 0.97001 * 119.99868 * 180.02562 * 12 11 9 40 40 H 1.09004 * 109.46866 * 314.20329 * 17 7 6 41 41 H 1.08997 * 109.47330 * 74.20483 * 17 7 6 42 42 H 1.07993 * 126.28729 * 359.97243 * 19 18 17 43 43 H 1.08006 * 126.29179 * 180.02562 * 20 19 18 44 44 H 1.08001 * 125.89353 * 179.97438 * 21 20 19 45 45 H 1.09001 * 109.47393 * 96.06967 * 23 22 18 46 46 H 1.09002 * 109.47396 * 216.07090 * 23 22 18 47 47 H 1.09003 * 109.47184 * 336.07231 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4287 2.1996 -1.1806 5 6 1.9470 1.6047 -2.4915 6 6 1.6368 2.1260 1.3081 7 7 2.3146 1.4684 2.4333 8 6 1.6854 1.8296 3.7107 9 6 0.2901 1.2625 3.7615 10 1 -0.0641 0.6274 2.9630 11 6 -0.5343 1.5546 4.8274 12 7 -1.7731 1.1133 4.8406 13 14 0.1082 2.5771 6.2524 14 1 -0.1866 4.0115 6.0049 15 1 -0.5540 2.1455 7.5096 16 1 1.5758 2.3875 6.3756 17 6 3.7483 1.7880 2.4438 18 6 4.4667 0.8437 3.3729 19 6 5.0741 -0.3065 3.0168 20 6 5.6174 -0.8759 4.1853 21 6 5.3218 -0.0518 5.2110 22 7 4.6199 1.0079 4.7177 23 6 4.1116 2.1350 5.5034 24 1 -0.3633 0.6036 0.8318 25 1 -0.3634 0.4185 -0.9385 26 1 -0.3633 -1.0221 0.1069 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.1262 1.4438 -0.0909 30 1 0.3427 2.1112 -1.1458 31 1 1.7096 3.2512 -1.1226 32 1 1.5914 2.2054 -3.3287 33 1 3.0369 1.6021 -2.4833 34 1 1.5819 0.5831 -2.5963 35 1 0.5575 2.0505 1.4398 36 1 1.9261 3.1764 1.2734 37 1 2.2732 1.4224 4.5333 38 1 1.6399 2.9151 3.7991 39 1 -2.3533 1.3190 5.5903 40 1 4.1513 1.6831 1.4364 41 1 3.8897 2.8129 2.7868 42 1 5.1331 -0.7158 2.0191 43 1 6.1698 -1.8018 4.2480 44 1 5.5965 -0.2034 6.2445 45 1 3.1545 1.8647 5.9496 46 1 4.8238 2.3792 6.2915 47 1 3.9781 3.0000 4.8536 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093101055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:26 Heat of formation + Delta-G solvation = 46.720362 kcal Electronic energy + Delta-G solvation = -23310.184270 eV Core-core repulsion = 20300.832153 eV Total energy + Delta-G solvation = -3009.352117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82505 -38.05335 -35.36482 -32.62390 -32.40135 -30.75801 -29.85767 -28.57189 -26.59961 -26.00514 -24.42747 -23.23338 -22.70162 -20.48381 -19.99227 -18.69682 -18.23773 -17.10531 -16.41831 -15.43361 -15.28187 -14.80616 -14.51695 -14.08668 -13.87311 -13.73920 -12.97780 -12.85770 -12.67047 -12.49818 -12.44676 -12.22577 -12.07743 -11.86272 -11.67451 -11.65051 -11.56796 -11.31217 -11.02000 -10.86964 -10.77140 -10.51272 -10.33034 -9.97129 -9.86195 -9.82346 -9.55772 -9.23541 -8.56476 -8.10467 -7.59453 -7.30721 -6.07492 -4.02829 2.69228 3.17061 3.21067 3.28955 3.41086 3.49567 4.35632 4.80502 5.06587 5.23329 5.25074 5.27174 5.34758 5.37882 5.45324 5.47516 5.60596 5.67773 5.77852 5.84368 5.87859 5.92802 6.02916 6.09290 6.12321 6.16611 6.21394 6.24049 6.28006 6.32769 6.50698 6.60153 6.70737 6.72621 6.75080 6.78136 6.86125 6.96823 7.08967 7.17209 7.50665 7.59526 7.71648 7.81725 7.92471 8.07322 8.65476 9.05099 9.54617 11.05612 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.011011 B = 0.008214 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.298084 B = 3408.106877 C = 5205.790583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.081 4.081 4 C -0.124 4.124 5 C -0.148 4.148 6 C 0.062 3.938 7 N -0.515 5.515 8 C 0.154 3.846 9 C -0.504 4.504 10 H 0.085 0.915 11 C 0.067 3.933 12 N -0.898 5.898 13 Si 0.869 3.131 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.262 1.262 17 C 0.117 3.883 18 C 0.044 3.956 19 C -0.191 4.191 20 C -0.203 4.203 21 C -0.025 4.025 22 N -0.441 5.441 23 C 0.059 3.941 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.015 0.985 37 H 0.037 0.963 38 H -0.023 1.023 39 H 0.262 0.738 40 H 0.086 0.914 41 H 0.024 0.976 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.153 0.847 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.566 2.047 -6.045 13.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.100 4.100 4 C -0.162 4.162 5 C -0.205 4.205 6 C -0.065 4.065 7 N -0.238 5.238 8 C 0.028 3.972 9 C -0.542 4.542 10 H 0.103 0.897 11 C -0.134 4.134 12 N -0.538 5.538 13 Si 0.698 3.302 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.188 1.188 17 C -0.011 4.011 18 C -0.068 4.068 19 C -0.216 4.216 20 C -0.228 4.228 21 C -0.155 4.155 22 N -0.116 5.116 23 C -0.083 4.083 24 H 0.091 0.909 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.033 0.967 37 H 0.055 0.945 38 H -0.005 1.005 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.041 0.959 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.171 0.829 45 H 0.110 0.890 46 H 0.091 0.909 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.199 1.850 -5.780 12.737 hybrid contribution 0.224 1.420 1.162 1.848 sum 11.423 3.270 -4.619 12.748 Atomic orbital electron populations 1.21875 0.96255 1.01425 1.01509 1.21355 0.95895 0.95664 1.01365 1.21200 0.99102 0.95990 0.93703 1.21621 1.01308 0.98862 0.94364 1.21762 1.00683 1.00999 0.97082 1.22179 1.01469 0.93374 0.89516 1.61934 0.99075 1.58332 1.04471 1.20438 0.96374 0.92837 0.87581 1.21077 0.95011 1.30203 1.07901 0.89669 1.24899 0.94711 0.95862 0.97944 1.69889 1.05900 1.46451 1.31541 0.87051 0.79387 0.80789 0.83022 1.20598 1.21280 1.18826 1.20576 0.90280 0.93312 0.96963 1.20216 1.03979 0.99705 0.82921 1.20499 1.06131 0.96391 0.98591 1.20738 1.08066 1.01178 0.92842 1.21621 1.04208 0.90684 0.98968 1.43899 1.42429 1.18285 1.07014 1.22415 1.01133 0.88566 0.96144 0.90887 0.93945 0.93756 0.93816 0.90308 0.92201 0.91352 0.92842 0.93514 0.93190 0.92566 0.88508 0.96688 0.94543 1.00491 0.92781 0.89583 0.95850 0.85272 0.85369 0.82932 0.89020 0.90924 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.11 37.16 0.34 -2.25 16 2 C -0.11 -1.69 5.30 -26.73 -0.14 -1.83 16 3 C -0.08 -1.23 2.17 -90.62 -0.20 -1.43 16 4 C -0.12 -1.64 5.09 -26.73 -0.14 -1.77 16 5 C -0.15 -1.68 9.55 37.16 0.35 -1.33 16 6 C 0.06 1.14 4.08 -3.82 -0.02 1.13 16 7 N -0.51 -10.29 3.77 -237.52 -0.89 -11.18 16 8 C 0.15 3.55 3.05 -4.98 -0.02 3.53 16 9 C -0.50 -13.76 8.74 -34.44 -0.30 -14.06 16 10 H 0.09 2.54 6.78 -52.48 -0.36 2.18 16 11 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 12 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 13 Si 0.87 20.54 27.43 -169.99 -4.66 15.87 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.26 -5.60 4.26 56.52 0.24 -5.35 16 17 C 0.12 2.03 4.99 -4.98 -0.02 2.01 16 18 C 0.04 0.79 5.81 -81.79 -0.48 0.31 16 19 C -0.19 -3.29 10.77 -39.78 -0.43 -3.72 16 20 C -0.20 -3.27 10.86 -39.78 -0.43 -3.70 16 21 C -0.02 -0.40 11.44 -16.75 -0.19 -0.59 16 22 N -0.44 -7.60 2.86 -119.90 -0.34 -7.95 16 23 C 0.06 0.92 9.17 59.84 0.55 1.47 16 24 H 0.07 1.46 5.29 -51.93 -0.27 1.18 16 25 H 0.04 0.63 6.58 -51.93 -0.34 0.28 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.62 6.97 -51.93 -0.36 0.26 16 28 H 0.08 1.47 7.61 -51.93 -0.40 1.08 16 29 H 0.06 0.87 6.42 -51.93 -0.33 0.54 16 30 H 0.07 0.95 6.15 -51.93 -0.32 0.63 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.64 6.99 -51.93 -0.36 0.28 16 35 H 0.10 2.04 4.81 -51.93 -0.25 1.79 16 36 H 0.01 0.26 8.05 -51.93 -0.42 -0.15 16 37 H 0.04 0.85 3.23 -51.93 -0.17 0.68 16 38 H -0.02 -0.52 7.39 -51.93 -0.38 -0.91 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.09 1.34 6.26 -51.93 -0.32 1.01 16 41 H 0.02 0.40 7.04 -51.93 -0.37 0.03 16 42 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 43 H 0.13 1.76 8.06 -52.48 -0.42 1.33 16 44 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 45 H 0.09 1.65 4.28 -51.93 -0.22 1.43 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.08 1.20 6.81 -51.93 -0.35 0.84 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -29.70 345.95 -9.04 -38.73 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.91 Total: 5.94 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -1.21 Total: -20.44 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.46 Total: -45.32 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.66 Total: 15.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.70 -9.04 -38.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.455 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds