Wall clock time and date at job start Tue Mar 31 2020 00:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47107 * 2 1 4 4 C 1.53002 * 109.47482 * 305.06989 * 3 2 1 5 5 C 1.53000 * 109.46993 * 294.22841 * 4 3 2 6 6 C 1.53004 * 109.47177 * 65.07119 * 3 2 1 7 7 N 1.46896 * 109.46983 * 64.73750 * 6 3 2 8 8 C 1.46901 * 111.00043 * 195.85724 * 7 6 3 9 9 C 1.50695 * 109.47395 * 66.39863 * 8 7 6 10 10 H 1.08006 * 120.00065 * 4.74050 * 9 8 7 11 11 C 1.37878 * 120.00206 * 184.74444 * 9 8 7 12 12 N 1.31513 * 119.99785 * 176.70778 * 11 9 8 13 13 Si 1.86792 * 119.99956 * 356.71079 * 11 9 8 14 14 H 1.48507 * 109.47050 * 91.95132 * 13 11 9 15 15 H 1.48501 * 109.47267 * 211.94912 * 13 11 9 16 16 H 1.48496 * 109.47279 * 331.95184 * 13 11 9 17 17 C 1.46900 * 111.00249 * 71.90389 * 7 6 3 18 18 C 1.50698 * 109.47086 * 194.21178 * 17 7 6 19 19 C 1.34857 * 125.89264 * 94.25874 * 18 17 7 20 20 C 1.40888 * 107.41615 * 179.97438 * 19 18 17 21 21 C 1.34853 * 107.42062 * 359.97438 * 20 19 18 22 22 N 1.36342 * 125.89075 * 273.94256 * 18 17 7 23 23 C 1.46494 * 125.63452 * 0.02562 * 22 18 17 24 24 H 1.09004 * 109.47010 * 305.96850 * 1 2 3 25 25 H 1.08994 * 109.47551 * 65.96759 * 1 2 3 26 26 H 1.08997 * 109.47031 * 185.97062 * 1 2 3 27 27 H 1.09002 * 109.46463 * 240.00082 * 2 1 3 28 28 H 1.09000 * 109.46894 * 119.99910 * 2 1 3 29 29 H 1.09000 * 109.47036 * 185.07287 * 3 2 1 30 30 H 1.09007 * 109.46771 * 54.22549 * 4 3 2 31 31 H 1.08999 * 109.47324 * 174.22315 * 4 3 2 32 32 H 1.09003 * 109.46869 * 185.61971 * 5 4 3 33 33 H 1.08993 * 109.46775 * 305.61462 * 5 4 3 34 34 H 1.09000 * 109.47225 * 65.62091 * 5 4 3 35 35 H 1.08994 * 109.47009 * 304.73513 * 6 3 2 36 36 H 1.09007 * 109.46892 * 184.73378 * 6 3 2 37 37 H 1.08997 * 109.47534 * 186.40218 * 8 7 6 38 38 H 1.09002 * 109.46726 * 306.39884 * 8 7 6 39 39 H 0.97001 * 119.99868 * 180.02562 * 12 11 9 40 40 H 1.09004 * 109.46866 * 314.20329 * 17 7 6 41 41 H 1.08997 * 109.47330 * 74.20483 * 17 7 6 42 42 H 1.07993 * 126.28729 * 359.97243 * 19 18 17 43 43 H 1.08006 * 126.29179 * 180.02562 * 20 19 18 44 44 H 1.08001 * 125.89353 * 179.97438 * 21 20 19 45 45 H 1.09001 * 109.47393 * 96.06967 * 23 22 18 46 46 H 1.09002 * 109.47396 * 216.07090 * 23 22 18 47 47 H 1.09003 * 109.47184 * 336.07231 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4287 2.1996 -1.1806 5 6 1.9470 1.6047 -2.4915 6 6 1.6368 2.1260 1.3081 7 7 2.3146 1.4684 2.4333 8 6 1.6854 1.8296 3.7107 9 6 0.2901 1.2625 3.7615 10 1 -0.0641 0.6274 2.9630 11 6 -0.5343 1.5546 4.8274 12 7 -1.7731 1.1133 4.8406 13 14 0.1082 2.5771 6.2524 14 1 -0.1866 4.0115 6.0049 15 1 -0.5540 2.1455 7.5096 16 1 1.5758 2.3875 6.3756 17 6 3.7483 1.7880 2.4438 18 6 4.4667 0.8437 3.3729 19 6 5.0741 -0.3065 3.0168 20 6 5.6174 -0.8759 4.1853 21 6 5.3218 -0.0518 5.2110 22 7 4.6199 1.0079 4.7177 23 6 4.1116 2.1350 5.5034 24 1 -0.3633 0.6036 0.8318 25 1 -0.3634 0.4185 -0.9385 26 1 -0.3633 -1.0221 0.1069 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.1262 1.4438 -0.0909 30 1 0.3427 2.1112 -1.1458 31 1 1.7096 3.2512 -1.1226 32 1 1.5914 2.2054 -3.3287 33 1 3.0369 1.6021 -2.4833 34 1 1.5819 0.5831 -2.5963 35 1 0.5575 2.0505 1.4398 36 1 1.9261 3.1764 1.2734 37 1 2.2732 1.4224 4.5333 38 1 1.6399 2.9151 3.7991 39 1 -2.3533 1.3190 5.5903 40 1 4.1513 1.6831 1.4364 41 1 3.8897 2.8129 2.7868 42 1 5.1331 -0.7158 2.0191 43 1 6.1698 -1.8018 4.2480 44 1 5.5965 -0.2034 6.2445 45 1 3.1545 1.8647 5.9496 46 1 4.8238 2.3792 6.2915 47 1 3.9781 3.0000 4.8536 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093101055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:25 Heat of formation + Delta-G solvation = 30.389718 kcal Electronic energy + Delta-G solvation = -23310.892420 eV Core-core repulsion = 20300.832153 eV Total energy + Delta-G solvation = -3010.060266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.08422 -39.45818 -36.80188 -34.61377 -33.72953 -31.92804 -31.32180 -30.23473 -28.06581 -27.24124 -25.84001 -24.74167 -24.09402 -22.01946 -21.28956 -19.99526 -19.57863 -19.04401 -17.80132 -16.87819 -16.60864 -16.46798 -15.86987 -15.60591 -15.33173 -15.17730 -14.48742 -14.22866 -14.09933 -13.95899 -13.67517 -13.56653 -13.43129 -13.30033 -13.01582 -12.90645 -12.82899 -12.67913 -12.50423 -12.38978 -12.23252 -12.00398 -11.80515 -11.70922 -11.39571 -11.17407 -11.04681 -10.95822 -10.69423 -9.36881 -9.00087 -8.75703 -8.24735 -6.25600 1.25607 1.31294 1.38812 1.45569 2.19618 2.23647 2.34137 3.08474 3.35584 3.93648 3.99271 4.01167 4.11210 4.16502 4.23178 4.29600 4.42637 4.46879 4.54848 4.60045 4.64289 4.67956 4.75992 4.79679 4.83498 4.87883 4.92349 4.99819 5.02671 5.07940 5.15265 5.19287 5.26650 5.39967 5.46897 5.49289 5.51635 5.53840 5.60059 5.71181 5.75961 6.07170 6.25015 6.43489 6.45827 6.61364 6.71971 6.82803 7.36421 8.91424 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.011011 B = 0.008214 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.298084 B = 3408.106877 C = 5205.790583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.071 4.071 4 C -0.121 4.121 5 C -0.143 4.143 6 C 0.065 3.935 7 N -0.527 5.527 8 C 0.168 3.832 9 C -0.505 4.505 10 H 0.042 0.958 11 C 0.004 3.996 12 N -0.950 5.950 13 Si 0.933 3.067 14 H -0.274 1.274 15 H -0.290 1.290 16 H -0.225 1.225 17 C 0.122 3.878 18 C 0.016 3.984 19 C -0.202 4.202 20 C -0.217 4.217 21 C -0.026 4.026 22 N -0.451 5.451 23 C 0.057 3.943 24 H 0.031 0.969 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.023 0.977 37 H 0.042 0.958 38 H -0.023 1.023 39 H 0.262 0.738 40 H 0.105 0.895 41 H 0.030 0.970 42 H 0.137 0.863 43 H 0.149 0.851 44 H 0.183 0.817 45 H 0.067 0.933 46 H 0.109 0.891 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.425 2.915 -6.204 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 C -0.090 4.090 4 C -0.159 4.159 5 C -0.201 4.201 6 C -0.062 4.062 7 N -0.251 5.251 8 C 0.041 3.959 9 C -0.544 4.544 10 H 0.060 0.940 11 C -0.193 4.193 12 N -0.591 5.591 13 Si 0.757 3.243 14 H -0.200 1.200 15 H -0.216 1.216 16 H -0.149 1.149 17 C -0.005 4.005 18 C -0.096 4.096 19 C -0.227 4.227 20 C -0.241 4.241 21 C -0.156 4.156 22 N -0.127 5.127 23 C -0.084 4.084 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.060 0.940 38 H -0.005 1.005 39 H 0.071 0.929 40 H 0.123 0.877 41 H 0.048 0.952 42 H 0.155 0.845 43 H 0.167 0.833 44 H 0.200 0.800 45 H 0.086 0.914 46 H 0.127 0.873 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.089 2.719 -5.962 15.538 hybrid contribution -0.687 1.065 1.135 1.701 sum 13.401 3.785 -4.827 14.738 Atomic orbital electron populations 1.21789 0.97276 1.00378 1.00930 1.21273 0.94844 0.96413 1.01041 1.21137 0.99952 0.95130 0.92749 1.21589 1.00513 0.99219 0.94538 1.21727 1.01273 1.00983 0.96084 1.22136 0.99229 0.94180 0.90678 1.61854 1.00786 1.59012 1.03436 1.20166 0.93979 0.92186 0.89599 1.21317 0.97321 1.29177 1.06550 0.93967 1.25835 0.94758 0.97461 1.01228 1.70070 1.07637 1.48717 1.32691 0.86014 0.80984 0.78756 0.78499 1.19965 1.21575 1.14913 1.20594 0.88087 0.93647 0.98215 1.20378 1.05074 1.00421 0.83701 1.20797 1.06028 0.96373 0.99544 1.21088 1.08372 1.02129 0.92542 1.22203 1.03080 0.89926 1.00379 1.44113 1.42606 1.19028 1.06944 1.22466 1.00945 0.88086 0.96948 0.94946 0.91665 0.94289 0.91172 0.93379 0.90674 0.92519 0.92044 0.92078 0.92196 0.92650 0.92238 0.95919 0.94037 1.00538 0.92880 0.87705 0.95161 0.84537 0.83339 0.79976 0.91440 0.87260 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.11 71.98 0.66 -4.50 16 2 C -0.10 -3.15 5.30 30.59 0.16 -2.98 16 3 C -0.07 -2.09 2.17 -10.79 -0.02 -2.11 16 4 C -0.12 -3.00 5.09 30.60 0.16 -2.84 16 5 C -0.14 -2.84 9.55 71.98 0.69 -2.15 16 6 C 0.07 2.43 4.08 86.31 0.35 2.78 16 7 N -0.53 -21.16 3.77 -905.38 -3.41 -24.57 16 8 C 0.17 7.78 3.05 85.56 0.26 8.04 16 9 C -0.51 -28.82 8.74 25.60 0.22 -28.60 16 10 H 0.04 2.71 6.78 -2.91 -0.02 2.69 16 11 C 0.00 0.21 5.47 84.66 0.46 0.67 16 12 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 13 Si 0.93 42.58 27.43 68.60 1.88 44.46 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 16 H -0.23 -8.87 4.26 99.48 0.42 -8.44 16 17 C 0.12 4.06 4.99 85.56 0.43 4.49 16 18 C 0.02 0.55 5.81 41.08 0.24 0.79 16 19 C -0.20 -6.64 10.77 22.14 0.24 -6.40 16 20 C -0.22 -6.48 10.86 22.14 0.24 -6.24 16 21 C -0.03 -0.76 11.44 83.21 0.95 0.20 16 22 N -0.45 -14.49 2.86 -533.25 -1.52 -16.01 16 23 C 0.06 1.60 9.17 127.77 1.17 2.77 16 24 H 0.03 1.39 5.29 -2.39 -0.01 1.38 16 25 H 0.06 1.95 6.58 -2.39 -0.02 1.93 16 26 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.88 6.97 -2.39 -0.02 1.87 16 28 H 0.05 1.84 7.61 -2.39 -0.02 1.82 16 29 H 0.08 2.01 6.42 -2.39 -0.02 2.00 16 30 H 0.06 1.54 6.15 -2.38 -0.01 1.52 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.11 6.99 -2.39 -0.02 1.09 16 35 H 0.06 2.67 4.81 -2.39 -0.01 2.65 16 36 H 0.02 0.79 8.05 -2.38 -0.02 0.77 16 37 H 0.04 1.91 3.23 -2.39 -0.01 1.90 16 38 H -0.02 -1.06 7.39 -2.39 -0.02 -1.08 16 39 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.10 3.02 6.26 -2.38 -0.01 3.01 16 41 H 0.03 0.97 7.04 -2.39 -0.02 0.95 16 42 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 43 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 44 H 0.18 4.01 8.06 -2.91 -0.02 3.99 16 45 H 0.07 2.24 4.28 -2.39 -0.01 2.23 16 46 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.08 2.22 6.81 -2.39 -0.02 2.21 16 Total: -1.00 -67.76 345.95 4.11 -63.65 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.66 Total: 27.93 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 6.21 Total: -36.09 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -4.63 Total: -99.95 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.88 Total: 44.46 kcal Total: -67.76 4.11 -63.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.037 kcal (2) G-P(sol) polarization free energy of solvation -67.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds