Wall clock time and date at job start Tue Mar 31 2020 01:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46799 * 2 1 4 4 H 1.08996 * 109.47513 * 55.00338 * 3 2 1 5 5 C 1.53001 * 109.47286 * 294.99420 * 3 2 1 6 6 C 1.52995 * 109.47362 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47029 * 60.00063 * 6 5 3 8 8 C 1.52997 * 109.47320 * 300.00069 * 7 6 5 9 9 H 1.08999 * 109.47688 * 300.00085 * 8 7 6 10 10 C 1.52999 * 109.47320 * 179.97438 * 8 7 6 11 11 N 1.46896 * 109.47092 * 64.99867 * 10 8 7 12 12 C 1.46903 * 111.00322 * 190.00273 * 11 10 8 13 13 C 1.50694 * 109.47636 * 164.39470 * 12 11 10 14 14 H 1.07995 * 119.99959 * 0.45099 * 13 12 11 15 15 C 1.37878 * 120.00441 * 180.45373 * 13 12 11 16 16 N 1.31512 * 120.00296 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99718 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47168 * 90.00012 * 17 15 13 19 19 H 1.48501 * 109.47078 * 210.00239 * 17 15 13 20 20 H 1.48503 * 109.46802 * 329.99642 * 17 15 13 21 21 C 1.46903 * 110.99956 * 66.04998 * 11 10 8 22 22 C 1.52997 * 109.47194 * 59.27876 * 21 11 10 23 23 C 1.47194 * 109.47244 * 178.00146 * 22 21 11 24 24 N 8.20901 * 118.20702 * 44.21534 * 2 1 3 25 25 C 1.53002 * 109.47050 * 60.00274 * 8 7 6 26 26 H 1.09002 * 109.46895 * 60.00383 * 1 2 3 27 27 H 1.08999 * 109.47210 * 300.00177 * 1 2 3 28 28 H 1.08998 * 109.47318 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46895 * 119.99617 * 2 1 3 30 30 H 1.08999 * 109.47210 * 239.99823 * 2 1 3 31 31 H 1.08994 * 109.47136 * 300.00622 * 5 3 2 32 32 H 1.09004 * 109.46873 * 60.00048 * 5 3 2 33 33 H 1.09008 * 109.46963 * 300.00622 * 6 5 3 34 34 H 1.08996 * 109.47594 * 180.02562 * 6 5 3 35 35 H 1.08998 * 109.46978 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.47239 * 60.00396 * 7 6 5 37 37 H 1.08997 * 109.47452 * 185.00138 * 10 8 7 38 38 H 1.09005 * 109.47171 * 305.00005 * 10 8 7 39 39 H 1.09007 * 109.46767 * 284.39650 * 12 11 10 40 40 H 1.09001 * 109.47120 * 44.39193 * 12 11 10 41 41 H 0.97001 * 120.00035 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.46925 * 179.27999 * 21 11 10 43 43 H 1.08997 * 109.47089 * 299.28213 * 21 11 10 44 44 H 1.08997 * 109.47091 * 298.00701 * 22 21 11 45 45 H 1.09005 * 109.47426 * 58.00275 * 22 21 11 46 46 H 1.09005 * 109.46973 * 180.02562 * 25 8 7 47 47 H 1.08994 * 109.47541 * 59.99877 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 2.1457 3.5689 -1.3077 7 6 3.6705 3.5702 -1.1822 8 6 4.0753 2.8862 0.1252 9 1 3.6410 3.4254 0.9671 10 6 5.6001 2.8870 0.2504 11 7 6.0809 4.2699 0.3703 12 6 7.5441 4.3305 0.2545 13 6 7.9692 5.7532 -0.0024 14 1 7.2273 6.5355 -0.0655 15 6 9.3053 6.0563 -0.1571 16 7 9.6763 7.2979 -0.3818 17 14 10.5886 4.7032 -0.0488 18 1 10.8179 4.1293 -1.3990 19 1 11.8599 5.2671 0.4718 20 1 10.1081 3.6375 0.8671 21 6 5.6267 4.8780 1.6280 22 6 6.1489 4.0574 2.8090 23 6 5.7342 4.6935 4.0700 24 7 5.4100 5.1849 5.0448 25 6 3.5648 1.4439 0.1254 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 2.0699 1.5875 -2.1491 32 1 0.5489 2.1252 -1.3970 33 1 1.7114 4.1081 -0.4658 34 1 1.8571 4.0563 -2.2389 35 1 4.0342 4.5977 -1.1828 36 1 4.1049 3.0310 -2.0239 37 1 5.8923 2.3227 1.1360 38 1 6.0376 2.4257 -0.6350 39 1 7.9968 3.9778 1.1813 40 1 7.8696 3.6991 -0.5722 41 1 10.6163 7.5112 -0.4903 42 1 6.0072 5.8971 1.6971 43 1 4.5371 4.8947 1.6509 44 1 5.7401 3.0483 2.7594 45 1 7.2371 4.0110 2.7663 46 1 3.8528 0.9567 1.0571 47 1 3.9991 0.9046 -0.7163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152849246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:22 Heat of formation + Delta-G solvation = -6.519629 kcal Electronic energy + Delta-G solvation = -22388.123018 eV Core-core repulsion = 19376.462242 eV Total energy + Delta-G solvation = -3011.660776 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.40311 -37.65600 -35.98137 -34.01680 -32.59919 -31.46766 -30.38345 -29.19329 -27.39644 -25.25852 -23.81319 -23.11153 -21.79566 -20.41652 -19.71101 -19.17589 -17.55881 -16.72621 -15.57735 -15.33342 -14.92422 -14.64779 -14.38572 -14.29062 -13.83635 -13.76556 -13.53619 -13.35762 -13.09335 -12.63829 -12.46385 -12.25733 -12.16290 -11.94350 -11.67357 -11.58535 -11.46413 -11.32402 -11.26361 -11.04378 -10.83246 -10.71954 -10.66088 -10.58508 -10.39077 -10.07901 -9.99899 -9.79110 -9.64023 -9.32906 -8.59960 -7.45873 -6.08106 -4.05760 3.01218 3.03541 3.24978 3.31868 3.33852 4.22463 4.37963 4.50780 4.66698 4.77673 4.85809 5.01927 5.19220 5.22884 5.24455 5.27204 5.35582 5.41978 5.47721 5.50984 5.62412 5.65215 5.67626 5.68403 5.76668 5.81490 5.83719 5.95940 5.98814 6.02272 6.04658 6.14335 6.18646 6.29950 6.31631 6.38295 6.45946 6.56205 6.70333 6.75318 6.78050 6.88040 7.54374 7.76985 7.83205 7.94497 8.60574 9.02127 9.53165 11.05036 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.004446 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.054838 B = 6296.330246 C = 7078.447275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.086 4.086 4 H 0.067 0.933 5 C -0.113 4.113 6 C -0.121 4.121 7 C -0.105 4.105 8 C -0.082 4.082 9 H 0.069 0.931 10 C 0.049 3.951 11 N -0.513 5.513 12 C 0.156 3.844 13 C -0.508 4.508 14 H 0.082 0.918 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.871 3.129 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.267 1.267 21 C 0.069 3.931 22 C -0.074 4.074 23 C 0.222 3.778 24 N -0.457 5.457 25 C -0.109 4.109 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.029 0.971 38 H 0.070 0.930 39 H -0.005 1.005 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.115 0.885 46 H 0.057 0.943 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.507 -14.551 -0.764 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.104 4.104 4 H 0.085 0.915 5 C -0.151 4.151 6 C -0.158 4.158 7 C -0.143 4.143 8 C -0.101 4.101 9 H 0.087 0.913 10 C -0.080 4.080 11 N -0.235 5.235 12 C 0.030 3.970 13 C -0.547 4.547 14 H 0.100 0.900 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.699 3.301 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.192 1.192 21 C -0.062 4.062 22 C -0.116 4.116 23 C -0.095 4.095 24 N -0.135 5.135 25 C -0.147 4.147 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.013 0.987 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.119 0.881 45 H 0.133 0.867 46 H 0.075 0.925 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.011 -13.428 0.242 20.142 hybrid contribution 1.408 -1.353 0.292 1.974 sum -13.603 -14.781 0.534 20.095 Atomic orbital electron populations 1.21822 0.96218 1.01186 1.01865 1.21577 0.95616 0.96817 1.01740 1.21165 0.95752 0.95290 0.98214 0.91468 1.21627 0.99952 0.96258 0.97246 1.21571 0.96994 0.95992 1.01283 1.21460 0.93885 1.02375 0.96571 1.21167 0.95002 0.95101 0.98845 0.91287 1.22276 0.94610 0.90788 1.00292 1.62180 1.14318 1.15630 1.31336 1.20300 0.82617 0.98829 0.95290 1.21008 0.92969 0.92158 1.48542 0.90044 1.24899 0.98330 0.95129 0.94925 1.69886 1.16668 1.17837 1.49359 0.86928 0.81681 0.82715 0.78790 1.20191 1.21311 1.19220 1.22138 0.99441 0.99649 0.84933 1.20237 1.04504 1.00079 0.86774 1.29330 0.92692 0.93221 0.94307 1.81269 1.10115 1.09876 1.12265 1.21627 0.94657 0.96939 1.01478 0.92515 0.92909 0.93192 0.92259 0.92162 0.92277 0.92482 0.92430 0.92461 0.90112 0.92580 0.95286 0.91142 0.98702 0.95692 0.92653 0.88715 0.91179 0.88069 0.86739 0.92452 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.12 -0.97 5.40 -26.73 -0.14 -1.12 16 3 C -0.09 -0.78 2.19 -90.61 -0.20 -0.98 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.11 -1.06 4.96 -26.73 -0.13 -1.19 16 6 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 7 C -0.11 -1.30 5.09 -26.73 -0.14 -1.44 16 8 C -0.08 -0.96 2.11 -90.62 -0.19 -1.15 16 9 H 0.07 0.83 6.35 -51.93 -0.33 0.50 16 10 C 0.05 0.67 4.08 -3.83 -0.02 0.65 16 11 N -0.51 -8.84 4.11 -236.07 -0.97 -9.82 16 12 C 0.16 3.28 3.68 -4.98 -0.02 3.26 16 13 C -0.51 -13.29 9.08 -34.44 -0.31 -13.60 16 14 H 0.08 2.35 7.74 -52.49 -0.41 1.94 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.90 -26.60 13.96 55.43 0.77 -25.82 16 17 Si 0.87 20.30 27.46 -169.99 -4.67 15.63 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -5.84 6.56 56.52 0.37 -5.47 16 21 C 0.07 1.08 4.93 -3.82 -0.02 1.06 16 22 C -0.07 -1.02 5.04 -29.52 -0.15 -1.17 16 23 C 0.22 3.45 15.44 -20.67 -0.32 3.13 16 24 N -0.46 -8.13 18.56 42.26 0.78 -7.35 16 25 C -0.11 -1.08 4.48 -26.73 -0.12 -1.20 16 26 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 33 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.19 7.75 -51.93 -0.40 0.79 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.03 0.36 6.02 -51.93 -0.31 0.05 16 38 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 39 H 0.00 -0.09 5.02 -51.93 -0.26 -0.35 16 40 H 0.03 0.54 7.22 -51.93 -0.37 0.16 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.09 1.76 7.15 -51.93 -0.37 1.39 16 43 H 0.07 0.98 6.40 -51.93 -0.33 0.65 16 44 H 0.10 1.14 6.37 -51.93 -0.33 0.81 16 45 H 0.11 1.70 6.21 -51.93 -0.32 1.38 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -28.79 357.51 -8.70 -37.49 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.35 Total: -1.35 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.65 Total: -14.17 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.59 Total: -42.99 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.67 Total: 15.63 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.79 -8.70 -37.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152849246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.968 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds