Wall clock time and date at job start Tue Mar 31 2020 01:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46799 * 2 1 4 4 H 1.08996 * 109.47513 * 55.00338 * 3 2 1 5 5 C 1.53001 * 109.47286 * 294.99420 * 3 2 1 6 6 C 1.52995 * 109.47362 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47029 * 60.00063 * 6 5 3 8 8 C 1.52997 * 109.47320 * 300.00069 * 7 6 5 9 9 H 1.08999 * 109.47688 * 300.00085 * 8 7 6 10 10 C 1.52999 * 109.47320 * 179.97438 * 8 7 6 11 11 N 1.46896 * 109.47092 * 64.99867 * 10 8 7 12 12 C 1.46903 * 111.00322 * 190.00273 * 11 10 8 13 13 C 1.50694 * 109.47636 * 164.39470 * 12 11 10 14 14 H 1.07995 * 119.99959 * 0.45099 * 13 12 11 15 15 C 1.37878 * 120.00441 * 180.45373 * 13 12 11 16 16 N 1.31512 * 120.00296 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99718 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47168 * 90.00012 * 17 15 13 19 19 H 1.48501 * 109.47078 * 210.00239 * 17 15 13 20 20 H 1.48503 * 109.46802 * 329.99642 * 17 15 13 21 21 C 1.46903 * 110.99956 * 66.04998 * 11 10 8 22 22 C 1.52997 * 109.47194 * 59.27876 * 21 11 10 23 23 C 1.47194 * 109.47244 * 178.00146 * 22 21 11 24 24 N 8.20901 * 118.20702 * 44.21534 * 2 1 3 25 25 C 1.53002 * 109.47050 * 60.00274 * 8 7 6 26 26 H 1.09002 * 109.46895 * 60.00383 * 1 2 3 27 27 H 1.08999 * 109.47210 * 300.00177 * 1 2 3 28 28 H 1.08998 * 109.47318 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46895 * 119.99617 * 2 1 3 30 30 H 1.08999 * 109.47210 * 239.99823 * 2 1 3 31 31 H 1.08994 * 109.47136 * 300.00622 * 5 3 2 32 32 H 1.09004 * 109.46873 * 60.00048 * 5 3 2 33 33 H 1.09008 * 109.46963 * 300.00622 * 6 5 3 34 34 H 1.08996 * 109.47594 * 180.02562 * 6 5 3 35 35 H 1.08998 * 109.46978 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.47239 * 60.00396 * 7 6 5 37 37 H 1.08997 * 109.47452 * 185.00138 * 10 8 7 38 38 H 1.09005 * 109.47171 * 305.00005 * 10 8 7 39 39 H 1.09007 * 109.46767 * 284.39650 * 12 11 10 40 40 H 1.09001 * 109.47120 * 44.39193 * 12 11 10 41 41 H 0.97001 * 120.00035 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.46925 * 179.27999 * 21 11 10 43 43 H 1.08997 * 109.47089 * 299.28213 * 21 11 10 44 44 H 1.08997 * 109.47091 * 298.00701 * 22 21 11 45 45 H 1.09005 * 109.47426 * 58.00275 * 22 21 11 46 46 H 1.09005 * 109.46973 * 180.02562 * 25 8 7 47 47 H 1.08994 * 109.47541 * 59.99877 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 2.1457 3.5689 -1.3077 7 6 3.6705 3.5702 -1.1822 8 6 4.0753 2.8862 0.1252 9 1 3.6410 3.4254 0.9671 10 6 5.6001 2.8870 0.2504 11 7 6.0809 4.2699 0.3703 12 6 7.5441 4.3305 0.2545 13 6 7.9692 5.7532 -0.0024 14 1 7.2273 6.5355 -0.0655 15 6 9.3053 6.0563 -0.1571 16 7 9.6763 7.2979 -0.3818 17 14 10.5886 4.7032 -0.0488 18 1 10.8179 4.1293 -1.3990 19 1 11.8599 5.2671 0.4718 20 1 10.1081 3.6375 0.8671 21 6 5.6267 4.8780 1.6280 22 6 6.1489 4.0574 2.8090 23 6 5.7342 4.6935 4.0700 24 7 5.4100 5.1849 5.0448 25 6 3.5648 1.4439 0.1254 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 2.0699 1.5875 -2.1491 32 1 0.5489 2.1252 -1.3970 33 1 1.7114 4.1081 -0.4658 34 1 1.8571 4.0563 -2.2389 35 1 4.0342 4.5977 -1.1828 36 1 4.1049 3.0310 -2.0239 37 1 5.8923 2.3227 1.1360 38 1 6.0376 2.4257 -0.6350 39 1 7.9968 3.9778 1.1813 40 1 7.8696 3.6991 -0.5722 41 1 10.6163 7.5112 -0.4903 42 1 6.0072 5.8971 1.6971 43 1 4.5371 4.8947 1.6509 44 1 5.7401 3.0483 2.7594 45 1 7.2371 4.0110 2.7663 46 1 3.8528 0.9567 1.0571 47 1 3.9991 0.9046 -0.7163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152849246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:22 Heat of formation + Delta-G solvation = -21.760289 kcal Electronic energy + Delta-G solvation = -22388.783903 eV Core-core repulsion = 19376.462242 eV Total energy + Delta-G solvation = -3012.321660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.39369 -38.80510 -37.29125 -35.01758 -34.41441 -32.43786 -31.77444 -30.09567 -28.87763 -26.38898 -25.02252 -24.19072 -22.74496 -21.66550 -20.54775 -20.26338 -19.01203 -18.50385 -16.86596 -16.42888 -16.05529 -15.69337 -15.64463 -15.45781 -15.09552 -14.79418 -14.65394 -14.40248 -14.14024 -14.03041 -13.66840 -13.60685 -13.16334 -13.08552 -12.99223 -12.83917 -12.52914 -12.39442 -12.27982 -12.17306 -12.06254 -11.85224 -11.77996 -11.68048 -11.55919 -11.40036 -11.29729 -11.02520 -10.69781 -10.63431 -10.59190 -8.81483 -8.18587 -6.20423 1.42705 1.43202 1.52813 1.74381 1.78538 2.42198 2.97785 3.17079 3.40246 3.85932 3.94301 3.98998 4.16994 4.20424 4.29652 4.40981 4.45536 4.48977 4.54560 4.64530 4.70564 4.71791 4.77724 4.87224 4.91267 4.93730 4.98782 5.07034 5.12367 5.13887 5.18416 5.20131 5.27850 5.33258 5.35047 5.43356 5.46155 5.49440 5.60196 5.65801 5.68776 5.73034 5.81254 6.10846 6.45015 6.61276 6.78444 6.88420 7.42988 8.98388 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.004446 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.054838 B = 6296.330246 C = 7078.447275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.083 4.083 4 H 0.065 0.935 5 C -0.109 4.109 6 C -0.118 4.118 7 C -0.104 4.104 8 C -0.075 4.075 9 H 0.070 0.930 10 C 0.049 3.951 11 N -0.528 5.528 12 C 0.164 3.836 13 C -0.505 4.505 14 H 0.035 0.965 15 C 0.003 3.997 16 N -0.955 5.955 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.293 1.293 20 H -0.235 1.235 21 C 0.073 3.927 22 C -0.062 4.062 23 C 0.243 3.757 24 N -0.497 5.497 25 C -0.104 4.104 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.011 0.989 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.111 0.889 46 H 0.070 0.930 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.223 -18.129 -0.202 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.101 4.101 4 H 0.083 0.917 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.141 4.141 8 C -0.094 4.094 9 H 0.088 0.912 10 C -0.079 4.079 11 N -0.250 5.250 12 C 0.037 3.963 13 C -0.544 4.544 14 H 0.053 0.947 15 C -0.193 4.193 16 N -0.597 5.597 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.220 1.220 20 H -0.158 1.158 21 C -0.057 4.057 22 C -0.104 4.104 23 C -0.074 4.074 24 N -0.176 5.176 25 C -0.142 4.142 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.028 0.972 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.158 0.842 45 H 0.129 0.871 46 H 0.089 0.911 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.763 -17.033 0.811 23.222 hybrid contribution 1.521 -0.150 0.055 1.529 sum -14.242 -17.183 0.866 22.335 Atomic orbital electron populations 1.21821 0.95810 1.01650 1.01822 1.21543 0.95959 0.95911 1.02032 1.21136 0.95210 0.96017 0.97781 0.91698 1.21595 1.00476 0.95045 0.97558 1.21532 0.95613 0.97200 1.01204 1.21398 0.95155 1.00496 0.97094 1.21113 0.93599 0.96534 0.98176 0.91214 1.22372 0.95739 0.88531 1.01221 1.62014 1.12023 1.18492 1.32486 1.20067 0.85244 0.95159 0.95853 1.21319 0.92057 0.94006 1.46973 0.94666 1.25853 1.01035 0.97561 0.94878 1.70073 1.17054 1.20649 1.51906 0.85808 0.78068 0.80049 0.79589 1.19547 1.21962 1.15838 1.21992 1.00413 0.97913 0.85390 1.20235 1.04216 1.01258 0.84682 1.29553 0.91574 0.92198 0.94084 1.81295 1.11488 1.11113 1.13677 1.21584 0.95083 0.95255 1.02241 0.92536 0.92992 0.92529 0.91806 0.92032 0.92293 0.91571 0.92565 0.92585 0.93207 0.93094 0.92869 0.91461 0.97163 0.95324 0.92871 0.92648 0.89274 0.84232 0.87142 0.91133 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 71.98 0.70 -1.18 16 2 C -0.12 -1.53 5.40 30.59 0.17 -1.37 16 3 C -0.08 -1.27 2.19 -10.79 -0.02 -1.29 16 4 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 5 C -0.11 -1.79 4.96 30.59 0.15 -1.64 16 6 C -0.12 -2.36 5.92 30.59 0.18 -2.18 16 7 C -0.10 -2.48 5.09 30.59 0.16 -2.33 16 8 C -0.08 -1.58 2.11 -10.79 -0.02 -1.60 16 9 H 0.07 1.47 6.35 -2.39 -0.02 1.46 16 10 C 0.05 1.20 4.08 86.30 0.35 1.55 16 11 N -0.53 -17.63 4.11 -900.80 -3.71 -21.34 16 12 C 0.16 6.68 3.68 85.55 0.31 6.99 16 13 C -0.50 -27.05 9.08 25.60 0.23 -26.82 16 14 H 0.04 2.15 7.74 -2.91 -0.02 2.13 16 15 C 0.00 0.17 5.47 84.66 0.46 0.63 16 16 N -0.96 -58.75 13.96 21.45 0.30 -58.45 16 17 Si 0.94 41.42 27.46 68.60 1.88 43.30 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.24 -9.06 6.56 99.48 0.65 -8.41 16 21 C 0.07 2.23 4.93 86.30 0.43 2.66 16 22 C -0.06 -1.55 5.04 28.79 0.15 -1.40 16 23 C 0.24 7.13 15.44 89.41 1.38 8.51 16 24 N -0.50 -17.20 18.56 20.04 0.37 -16.83 16 25 C -0.10 -1.70 4.48 30.60 0.14 -1.57 16 26 H 0.06 0.69 6.57 -2.39 -0.02 0.67 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.98 6.57 -2.39 -0.02 0.97 16 33 H 0.06 1.13 8.14 -2.38 -0.02 1.12 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.49 7.75 -2.39 -0.02 1.47 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.05 1.08 6.02 -2.39 -0.01 1.06 16 38 H 0.07 1.73 7.87 -2.38 -0.02 1.71 16 39 H 0.01 0.41 5.02 -2.38 -0.01 0.40 16 40 H 0.03 1.17 7.22 -2.39 -0.02 1.15 16 41 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.05 2.13 7.15 -2.39 -0.02 2.11 16 43 H 0.09 2.37 6.40 -2.39 -0.02 2.36 16 44 H 0.14 2.46 6.37 -2.39 -0.02 2.44 16 45 H 0.11 2.95 6.21 -2.38 -0.01 2.93 16 46 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -64.97 357.51 4.47 -60.50 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.87 Total: 13.85 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 4.75 Total: -21.03 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -3.03 Total: -96.62 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.88 Total: 43.30 kcal Total: -64.97 4.47 -60.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152849246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.738 kcal (2) G-P(sol) polarization free energy of solvation -64.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds