Wall clock time and date at job start Tue Mar 31 2020 01:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46931 * 2 1 4 4 H 1.09004 * 109.47383 * 306.32422 * 3 2 1 5 5 C 1.50704 * 109.47297 * 186.32446 * 3 2 1 6 6 H 1.07993 * 119.99993 * 244.90527 * 5 3 2 7 7 C 1.37885 * 119.99674 * 64.90655 * 5 3 2 8 8 N 1.31511 * 119.99723 * 193.24185 * 7 5 3 9 9 Si 1.86793 * 120.00083 * 13.24431 * 7 5 3 10 10 H 1.48503 * 109.47388 * 92.63805 * 9 7 5 11 11 H 1.48507 * 109.46904 * 212.64187 * 9 7 5 12 12 H 1.48506 * 109.47228 * 332.63849 * 9 7 5 13 13 N 1.46899 * 109.47425 * 66.32444 * 3 2 1 14 14 C 1.46898 * 111.00196 * 263.23817 * 13 3 2 15 15 C 1.50698 * 109.47336 * 186.61748 * 14 13 3 16 16 C 1.34851 * 125.89174 * 94.68912 * 15 14 13 17 17 C 1.40889 * 107.41875 * 179.88805 * 16 15 14 18 18 C 1.34853 * 107.41612 * 0.37768 * 17 16 15 19 19 N 1.36340 * 125.89179 * 275.00032 * 15 14 13 20 20 C 1.46500 * 125.63379 * 359.97438 * 19 15 14 21 21 C 1.53005 * 109.47368 * 85.00122 * 20 19 15 22 22 C 1.52993 * 109.47474 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47197 * 64.99938 * 22 21 20 24 24 C 1.52998 * 109.47259 * 185.00098 * 22 21 20 25 25 H 1.09004 * 109.47101 * 172.74553 * 1 2 3 26 26 H 1.08997 * 109.46969 * 52.74870 * 1 2 3 27 27 H 1.08997 * 109.47070 * 292.74682 * 1 2 3 28 28 H 1.08997 * 109.47120 * 119.99619 * 2 1 3 29 29 H 1.08999 * 109.47483 * 240.00277 * 2 1 3 30 30 H 0.96997 * 119.99858 * 179.97438 * 8 7 5 31 31 H 1.00902 * 111.00371 * 139.28253 * 13 3 2 32 32 H 1.09000 * 109.47161 * 306.61650 * 14 13 3 33 33 H 1.09005 * 109.47232 * 66.61442 * 14 13 3 34 34 H 1.07998 * 126.28789 * 0.03048 * 16 15 14 35 35 H 1.07997 * 126.29475 * 180.13402 * 17 16 15 36 36 H 1.07999 * 125.89102 * 179.80352 * 18 17 16 37 37 H 1.09006 * 109.47267 * 204.99739 * 20 19 15 38 38 H 1.08996 * 109.47840 * 324.99890 * 20 19 15 39 39 H 1.09003 * 109.47105 * 300.00162 * 21 20 19 40 40 H 1.09007 * 109.46734 * 59.99621 * 21 20 19 41 41 H 1.09003 * 109.47321 * 305.00402 * 22 21 20 42 42 H 1.08995 * 109.47701 * 180.02562 * 23 22 21 43 43 H 1.09007 * 109.47073 * 300.00456 * 23 22 21 44 44 H 1.09005 * 109.46967 * 59.99631 * 23 22 21 45 45 H 1.08996 * 109.47468 * 60.00064 * 24 22 21 46 46 H 1.08998 * 109.47400 * 180.02562 * 24 22 21 47 47 H 1.09001 * 109.46786 * 299.99734 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5871 1.9880 -0.8280 5 6 3.5388 1.4455 -0.1565 6 1 4.1646 1.8118 0.6438 7 6 4.1112 0.9805 -1.3216 8 7 5.4028 0.7369 -1.3680 9 14 3.0522 0.6965 -2.8339 10 1 3.0570 1.9182 -3.6781 11 1 3.5966 -0.4453 -3.6120 12 1 1.6611 0.3907 -2.4137 13 7 1.6789 2.0896 1.2684 14 6 0.4446 2.8735 1.1268 15 6 0.1944 3.6498 2.3940 16 6 0.5644 4.9257 2.6256 17 6 0.1354 5.2600 3.9253 18 6 -0.4730 4.1728 4.4416 19 7 -0.4398 3.1814 3.5063 20 6 -0.9941 1.8351 3.6694 21 6 0.1085 0.8826 4.1361 22 6 -0.4705 -0.5232 4.3071 23 6 -0.9190 -1.0591 2.9460 24 6 0.5992 -1.4477 4.8919 25 1 -0.3633 -1.0195 -0.1298 26 1 -0.3633 0.6220 -0.8180 27 1 -0.3633 0.3973 0.9477 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 5.8054 0.4094 -2.1875 31 1 2.4350 2.6641 1.6094 32 1 0.5477 3.5657 0.2911 33 1 -0.3933 2.2016 0.9408 34 1 1.0906 5.5732 1.9399 35 1 0.2724 6.2106 4.4191 36 1 -0.9114 4.1002 5.4259 37 1 -1.7923 1.8583 4.4115 38 1 -1.3941 1.4888 2.7165 39 1 0.9067 0.8594 3.3941 40 1 0.5085 1.2289 5.0892 41 1 -1.3256 -0.4844 4.9819 42 1 -1.3319 -2.0604 3.0678 43 1 -1.6810 -0.4004 2.5293 44 1 -0.0639 -1.0979 2.2711 45 1 0.9187 -1.0660 5.8616 46 1 0.1869 -2.4493 5.0133 47 1 1.4542 -1.4865 4.2170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184096630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:40 Heat of formation + Delta-G solvation = 13.195540 kcal Electronic energy + Delta-G solvation = -23212.354547 eV Core-core repulsion = 20201.548685 eV Total energy + Delta-G solvation = -3010.805862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.09857 -38.27559 -37.67332 -34.60143 -33.61003 -33.27660 -30.68384 -29.17069 -28.61284 -27.91535 -25.34894 -24.45348 -23.94752 -21.42735 -21.40767 -20.79848 -19.97190 -18.95628 -17.78448 -17.07342 -16.40583 -15.92576 -15.76486 -15.26270 -15.01833 -14.90828 -14.68507 -14.61874 -14.13589 -13.96651 -13.72432 -13.64751 -13.29331 -13.19804 -13.05004 -12.94341 -12.76443 -12.64830 -12.54739 -12.37936 -12.11751 -11.84296 -11.69052 -11.66593 -11.48419 -11.35801 -11.11415 -11.03060 -10.62742 -9.38307 -9.15240 -8.80197 -8.31885 -6.32391 1.32510 1.36629 1.39607 1.46608 2.17773 2.19814 2.33851 3.03575 3.67149 3.87036 3.89441 4.01855 4.15404 4.19994 4.34630 4.40927 4.47185 4.52055 4.53723 4.56347 4.65153 4.69891 4.77981 4.83011 4.86407 4.90466 4.93079 4.99000 5.11153 5.17809 5.23235 5.24428 5.30606 5.39506 5.41534 5.48509 5.50127 5.51323 5.57437 5.69362 5.84620 6.00374 6.20141 6.40562 6.50938 6.64278 6.69892 6.84154 7.33534 8.84770 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.006258 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.604311 B = 4472.916675 C = 5569.967398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C 0.199 3.801 4 H -0.001 1.001 5 C -0.531 4.531 6 H 0.034 0.966 7 C 0.021 3.979 8 N -0.942 5.942 9 Si 0.926 3.074 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.221 1.221 13 N -0.663 5.663 14 C 0.125 3.875 15 C 0.015 3.985 16 C -0.223 4.223 17 C -0.220 4.220 18 C -0.014 4.014 19 N -0.433 5.433 20 C 0.107 3.893 21 C -0.131 4.131 22 C -0.082 4.082 23 C -0.155 4.155 24 C -0.147 4.147 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.265 0.735 31 H 0.331 0.669 32 H 0.033 0.967 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.189 0.811 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.227 -0.178 11.335 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C 0.089 3.911 4 H 0.017 0.983 5 C -0.569 4.569 6 H 0.052 0.948 7 C -0.178 4.178 8 N -0.582 5.582 9 Si 0.749 3.251 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.143 1.143 13 N -0.294 5.294 14 C -0.004 4.004 15 C -0.098 4.098 16 C -0.248 4.248 17 C -0.244 4.244 18 C -0.144 4.144 19 N -0.107 5.107 20 C -0.013 4.013 21 C -0.169 4.169 22 C -0.101 4.101 23 C -0.212 4.212 24 C -0.204 4.204 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.141 0.859 35 H 0.162 0.838 36 H 0.206 0.794 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.572 -1.165 11.508 21.880 hybrid contribution 1.138 0.841 -1.490 2.055 sum -17.434 -0.324 10.018 20.110 Atomic orbital electron populations 1.21998 0.95433 1.01124 1.01696 1.21715 0.95512 0.97442 0.99583 1.19352 0.92399 0.92259 0.87057 0.98326 1.21499 0.91877 1.42218 1.01354 0.94815 1.25753 0.95882 0.94203 1.01943 1.70106 1.13325 1.46233 1.28532 0.86216 0.82071 0.77653 0.79114 1.20747 1.21344 1.14307 1.60659 1.05319 1.34185 1.29190 1.20536 0.94545 0.94216 0.91099 1.20253 1.04051 0.94620 0.90853 1.20881 1.08724 0.96014 0.99201 1.21031 1.07304 1.00009 0.96055 1.22228 1.07628 0.88238 0.96330 1.44189 1.43630 1.11381 1.11514 1.22048 0.96696 0.78900 1.03698 1.22023 0.98570 0.94602 1.01691 1.20973 0.98444 0.93115 0.97587 1.22084 1.01286 1.01132 0.96746 1.21812 0.98516 0.99696 1.00366 0.92425 0.94080 0.90833 0.93428 0.94587 0.92633 0.85205 0.94898 0.89744 0.85932 0.83753 0.79416 0.87265 0.89530 0.91339 0.92455 0.89558 0.91986 0.92061 0.93262 0.92559 0.91659 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 7.58 71.98 0.55 -3.99 16 2 C -0.10 -4.24 4.82 30.59 0.15 -4.10 16 3 C 0.20 8.94 1.75 44.17 0.08 9.02 16 4 H 0.00 -0.04 6.24 -2.38 -0.01 -0.05 16 5 C -0.53 -29.89 9.02 25.60 0.23 -29.66 16 6 H 0.03 2.13 7.74 -2.91 -0.02 2.11 16 7 C 0.02 1.18 5.35 84.66 0.45 1.64 16 8 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 9 Si 0.93 43.30 25.75 68.60 1.77 45.07 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.22 -9.23 5.39 99.48 0.54 -8.70 16 13 N -0.66 -26.04 5.49 -499.45 -2.74 -28.78 16 14 C 0.13 4.18 5.38 85.56 0.46 4.64 16 15 C 0.01 0.47 6.33 41.08 0.26 0.73 16 16 C -0.22 -7.05 10.76 22.14 0.24 -6.81 16 17 C -0.22 -5.91 10.86 22.14 0.24 -5.67 16 18 C -0.01 -0.32 11.42 83.21 0.95 0.63 16 19 N -0.43 -11.17 2.75 -509.96 -1.40 -12.57 16 20 C 0.11 2.19 5.60 86.38 0.48 2.67 16 21 C -0.13 -2.98 5.01 30.59 0.15 -2.83 16 22 C -0.08 -1.54 2.92 -10.80 -0.03 -1.57 16 23 C -0.16 -3.04 8.00 71.98 0.58 -2.46 16 24 C -0.15 -2.96 9.19 71.98 0.66 -2.30 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.04 1.26 8.12 -2.39 -0.02 1.24 16 27 H 0.07 2.07 4.11 -2.39 -0.01 2.06 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.56 4.82 -2.39 -0.01 1.55 16 30 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.33 14.42 7.90 -89.69 -0.71 13.71 16 32 H 0.03 1.16 7.90 -2.39 -0.02 1.14 16 33 H 0.08 2.57 4.72 -2.38 -0.01 2.55 16 34 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.19 3.03 8.06 -2.91 -0.02 3.00 16 37 H 0.11 1.58 8.12 -2.38 -0.02 1.56 16 38 H 0.09 1.78 5.41 -2.39 -0.01 1.77 16 39 H 0.07 2.10 7.39 -2.39 -0.02 2.08 16 40 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 1.07 6.23 -2.38 -0.01 1.05 16 44 H 0.05 1.22 6.36 -2.38 -0.02 1.20 16 45 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -64.99 354.23 3.43 -61.56 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.06 Total: 33.30 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 5.45 Total: -40.07 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -3.84 Total: -99.86 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.77 Total: 45.07 kcal Total: -64.99 3.43 -61.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184096630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.756 kcal (2) G-P(sol) polarization free energy of solvation -64.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds