Wall clock time and date at job start Tue Mar 31 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47156 * 2 1 4 4 C 1.53002 * 109.52501 * 304.24901 * 3 2 1 5 5 C 1.52999 * 109.46989 * 302.58783 * 4 3 2 6 6 C 1.53114 * 109.52478 * 64.37678 * 3 2 1 7 7 C 1.53041 * 109.31333 * 177.53669 * 6 3 2 8 8 N 1.46847 * 109.52336 * 300.88754 * 7 6 3 9 9 C 1.46896 * 110.99782 * 185.80048 * 8 7 6 10 10 C 1.52996 * 109.47439 * 169.81094 * 9 8 7 11 11 H 1.08997 * 109.47378 * 54.84354 * 10 9 8 12 12 C 1.47204 * 109.46864 * 294.84866 * 10 9 8 13 13 N 6.99307 * 133.23166 * 47.18271 * 2 1 3 14 14 C 1.52993 * 109.47344 * 174.85070 * 10 9 8 15 15 C 1.50704 * 109.47312 * 184.99997 * 14 10 9 16 16 H 1.08002 * 119.99952 * 359.97438 * 15 14 10 17 17 C 1.37881 * 119.99962 * 180.02562 * 15 14 10 18 18 N 1.31513 * 119.99493 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00014 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46562 * 90.00971 * 19 17 15 21 21 H 1.48501 * 109.46999 * 210.00360 * 19 17 15 22 22 H 1.48493 * 109.47438 * 330.00684 * 19 17 15 23 23 C 1.46849 * 111.23646 * 61.67511 * 8 7 6 24 24 C 1.53036 * 109.52216 * 298.28320 * 23 8 7 25 25 H 1.09006 * 109.46801 * 302.98283 * 1 2 3 26 26 H 1.08999 * 109.46851 * 62.97911 * 1 2 3 27 27 H 1.08991 * 109.47450 * 182.97779 * 1 2 3 28 28 H 1.08998 * 109.47007 * 240.00004 * 2 1 3 29 29 H 1.08998 * 109.46793 * 120.00091 * 2 1 3 30 30 H 1.09002 * 109.46801 * 62.58434 * 4 3 2 31 31 H 1.08992 * 109.47197 * 182.58335 * 4 3 2 32 32 H 1.08994 * 109.46916 * 299.26215 * 5 4 3 33 33 H 1.08999 * 109.47694 * 59.26877 * 5 4 3 34 34 H 1.09005 * 109.47083 * 179.26764 * 5 4 3 35 35 H 1.08998 * 109.51018 * 297.50071 * 6 3 2 36 36 H 1.09005 * 109.50346 * 57.58252 * 6 3 2 37 37 H 1.08996 * 109.45744 * 60.85809 * 7 6 3 38 38 H 1.08996 * 109.46561 * 180.82476 * 7 6 3 39 39 H 1.09003 * 109.46820 * 289.80628 * 9 8 7 40 40 H 1.08999 * 109.47215 * 49.80391 * 9 8 7 41 41 H 1.08999 * 109.47376 * 304.99601 * 14 10 9 42 42 H 1.08995 * 109.47749 * 64.99657 * 14 10 9 43 43 H 0.97007 * 119.99873 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.46292 * 178.26417 * 23 8 7 45 45 H 1.09003 * 109.44915 * 58.29168 * 23 8 7 46 46 H 1.09000 * 109.50339 * 299.23248 * 24 23 8 47 47 H 1.09000 * 109.53185 * 179.13764 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4454 2.1951 -1.1920 5 6 1.8125 1.4694 -2.4879 6 6 1.6223 2.1330 1.3012 7 6 2.1869 3.5552 1.3233 8 7 3.6510 3.5036 1.2228 9 6 4.2368 4.8416 1.3790 10 6 5.7551 4.7200 1.5232 11 1 6.1571 4.1634 0.6767 12 6 6.0739 4.0105 2.7729 13 7 6.3200 3.4629 3.7374 14 6 6.3777 6.1171 1.5570 15 6 7.8799 5.9974 1.5753 16 1 8.3441 5.0223 1.5644 17 6 8.6617 7.1327 1.6070 18 7 9.9725 7.0281 1.6235 19 14 7.8589 8.8192 1.6266 20 1 7.6268 9.2406 3.0316 21 1 8.7506 9.7997 0.9567 22 1 6.5612 8.7582 0.9072 23 6 4.0760 2.8872 -0.0405 24 6 3.5678 1.4450 -0.1022 25 1 -0.3633 0.5595 0.8621 26 1 -0.3633 0.4669 -0.9155 27 1 -0.3634 -1.0262 0.0534 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.3606 2.2344 -1.0923 31 1 1.8448 3.2089 -1.2175 32 1 2.8969 1.4416 -2.5941 33 1 1.4242 0.4514 -2.4570 34 1 1.3779 1.9984 -3.3362 35 1 0.5346 2.1723 1.3594 36 1 2.0122 1.5735 2.1515 37 1 1.7853 4.1185 0.4810 38 1 1.9032 4.0442 2.2553 39 1 4.0024 5.4455 0.5023 40 1 3.8242 5.3173 2.2687 41 1 6.0685 6.6742 0.6726 42 1 6.0442 6.6421 2.4520 43 1 10.5226 7.8268 1.6454 44 1 5.1644 2.8916 -0.0986 45 1 3.6654 3.4532 -0.8767 46 1 3.9889 0.8750 0.7260 47 1 3.8701 0.9922 -1.0465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186549347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:02 Heat of formation + Delta-G solvation = -17.704228 kcal Electronic energy + Delta-G solvation = -22580.118424 eV Core-core repulsion = 19567.972647 eV Total energy + Delta-G solvation = -3012.145776 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.10064 -38.65506 -36.76022 -35.41750 -33.82211 -32.39744 -31.36855 -31.29973 -28.69292 -26.04495 -24.82022 -23.80657 -23.60881 -23.07160 -21.67580 -18.91832 -18.69571 -18.17665 -17.14839 -16.47433 -16.02248 -15.92188 -15.78417 -15.43046 -15.06837 -14.69892 -14.53479 -14.42678 -14.20543 -13.79782 -13.53561 -13.43594 -13.23863 -13.12756 -12.97953 -12.74464 -12.63648 -12.56692 -12.51743 -12.26637 -12.12214 -11.91361 -11.79167 -11.69661 -11.58315 -11.37507 -11.28297 -10.99698 -10.83520 -10.76092 -10.72306 -9.06830 -8.24659 -6.30392 1.43315 1.44400 1.55551 2.05487 2.13344 2.41093 2.98120 3.11938 3.33287 3.77180 3.84293 3.90598 4.08637 4.28705 4.31172 4.39744 4.41406 4.49862 4.54134 4.61896 4.65265 4.66369 4.75434 4.78695 4.80708 4.88128 4.89635 4.95781 5.04264 5.08905 5.16334 5.17721 5.22827 5.24605 5.26790 5.34543 5.41837 5.44213 5.45046 5.51924 5.59553 5.63838 5.76195 6.18828 6.29030 6.31394 6.76947 6.91237 7.33954 8.92384 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.028784 B = 0.003782 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.535485 B = 7400.754860 C = 7605.324829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.051 4.051 4 C -0.113 4.113 5 C -0.154 4.154 6 C -0.102 4.102 7 C 0.057 3.943 8 N -0.556 5.556 9 C 0.070 3.930 10 C 0.025 3.975 11 H 0.110 0.890 12 C 0.265 3.735 13 N -0.517 5.517 14 C -0.002 4.002 15 C -0.531 4.531 16 H 0.027 0.973 17 C 0.003 3.997 18 N -0.954 5.954 19 Si 0.949 3.051 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.223 1.223 23 C 0.049 3.951 24 C -0.104 4.104 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.026 0.974 43 H 0.265 0.735 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.314 -8.634 -9.351 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.052 4.052 4 C -0.150 4.150 5 C -0.211 4.211 6 C -0.140 4.140 7 C -0.071 4.071 8 N -0.282 5.282 9 C -0.059 4.059 10 C 0.003 3.997 11 H 0.128 0.872 12 C -0.051 4.051 13 N -0.194 5.194 14 C -0.041 4.041 15 C -0.569 4.569 16 H 0.045 0.955 17 C -0.194 4.194 18 N -0.595 5.595 19 Si 0.771 3.229 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.145 1.145 23 C -0.078 4.078 24 C -0.142 4.142 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.640 -9.678 -7.521 26.629 hybrid contribution 0.579 1.230 -0.520 1.455 sum -23.061 -8.449 -8.041 25.843 Atomic orbital electron populations 1.21846 0.95149 1.01611 1.02244 1.21558 0.96532 0.95319 1.01530 1.20558 0.94139 0.95485 0.94980 1.21646 1.00765 0.98811 0.93780 1.21867 1.01496 1.00830 0.96949 1.21654 1.00441 0.94807 0.97084 1.22125 0.86023 0.97701 1.01221 1.61842 1.09824 1.20702 1.35786 1.22099 0.90484 0.90235 1.03051 1.19101 0.96831 0.95784 0.87976 0.87210 1.29392 0.90130 0.91283 0.94328 1.80982 1.11813 1.12747 1.13900 1.19586 0.93492 0.92031 0.98996 1.21394 0.91813 0.93108 1.50581 0.95461 1.26051 0.95098 1.04232 0.94014 1.70093 1.06078 1.30785 1.52553 0.85690 0.80269 0.77917 0.78993 1.20205 1.21490 1.14518 1.22206 1.00120 0.95657 0.89866 1.21645 0.95453 0.95517 1.01604 0.92543 0.91881 0.92831 0.91523 0.93208 0.91126 0.92328 0.92927 0.92099 0.92679 0.90023 0.93096 0.93325 0.91071 0.90595 0.89814 0.91836 0.95571 0.92646 0.91734 0.93103 0.93359 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.14 71.98 0.66 -1.16 16 2 C -0.11 -1.64 4.44 30.60 0.14 -1.50 16 3 C -0.05 -0.82 0.32 -52.10 -0.02 -0.84 16 4 C -0.11 -1.55 3.87 30.59 0.12 -1.43 16 5 C -0.15 -1.98 9.16 71.98 0.66 -1.32 16 6 C -0.10 -1.78 4.56 30.65 0.14 -1.65 16 7 C 0.06 1.08 5.21 86.33 0.45 1.53 16 8 N -0.56 -13.44 4.36 -896.38 -3.91 -17.34 16 9 C 0.07 1.80 4.32 86.30 0.37 2.17 16 10 C 0.02 0.87 2.14 -12.60 -0.03 0.84 16 11 H 0.11 3.74 6.22 -2.39 -0.01 3.73 16 12 C 0.26 11.19 13.67 89.44 1.22 12.41 16 13 N -0.52 -24.34 18.54 20.01 0.37 -23.97 16 14 C 0.00 -0.08 3.49 29.85 0.10 0.02 16 15 C -0.53 -29.05 9.15 25.60 0.23 -28.81 16 16 H 0.03 1.69 7.84 -2.91 -0.02 1.67 16 17 C 0.00 0.15 5.47 84.66 0.46 0.61 16 18 N -0.95 -59.57 13.96 21.45 0.30 -59.28 16 19 Si 0.95 41.67 27.47 68.60 1.88 43.56 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 22 H -0.22 -8.30 6.54 99.48 0.65 -7.65 16 23 C 0.05 1.08 5.05 86.33 0.44 1.52 16 24 C -0.10 -2.07 4.65 30.65 0.14 -1.93 16 25 H 0.06 0.68 6.47 -2.38 -0.02 0.66 16 26 H 0.06 0.68 6.40 -2.39 -0.02 0.67 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.93 6.62 -2.39 -0.02 0.92 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.86 6.58 -2.39 -0.02 0.85 16 31 H 0.06 0.89 4.94 -2.39 -0.01 0.87 16 32 H 0.05 0.74 6.49 -2.39 -0.02 0.72 16 33 H 0.06 0.73 6.27 -2.39 -0.01 0.71 16 34 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.08 1.16 6.61 -2.39 -0.02 1.15 16 36 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.05 0.81 6.58 -2.39 -0.02 0.80 16 38 H 0.07 1.37 8.01 -2.39 -0.02 1.35 16 39 H 0.08 1.61 8.12 -2.39 -0.02 1.59 16 40 H 0.08 2.09 7.98 -2.39 -0.02 2.07 16 41 H 0.06 2.31 7.20 -2.39 -0.02 2.29 16 42 H 0.03 1.06 7.57 -2.39 -0.02 1.04 16 43 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 44 H 0.06 1.62 6.13 -2.39 -0.01 1.61 16 45 H 0.05 0.99 6.46 -2.39 -0.02 0.98 16 46 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.08 1.36 6.42 -2.39 -0.02 1.35 16 Total: -1.00 -68.28 347.64 4.63 -63.65 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.89 Total: 12.93 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 5.09 Total: -19.54 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -3.24 Total: -100.59 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.56 kcal Total: -68.28 4.63 -63.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186549347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.945 kcal (2) G-P(sol) polarization free energy of solvation -68.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds