Wall clock time and date at job start Tue Mar 31 2020 00:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46894 * 2 1 4 4 C 1.47199 * 109.47124 * 239.99825 * 2 1 3 5 5 N 2.60794 * 109.47312 * 239.99799 * 2 1 3 6 6 C 1.53000 * 109.47075 * 119.99845 * 2 1 3 7 7 C 1.53001 * 109.47222 * 300.00227 * 6 2 1 8 8 C 1.52994 * 109.47680 * 180.02562 * 7 6 2 9 9 C 1.52991 * 109.47671 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47373 * 179.97438 * 9 8 7 11 11 C 1.36933 * 120.00240 * 270.00099 * 10 9 8 12 12 H 1.07997 * 120.00637 * 142.01152 * 11 10 9 13 13 C 1.38820 * 119.99728 * 322.00793 * 11 10 9 14 14 N 1.31617 * 120.00002 * 156.08926 * 13 11 10 15 15 Si 1.86802 * 120.00010 * 336.09427 * 13 11 10 16 16 H 1.48507 * 109.46917 * 95.28647 * 15 13 11 17 17 H 1.48496 * 109.46914 * 215.28529 * 15 13 11 18 18 H 1.48502 * 109.47090 * 335.29092 * 15 13 11 19 19 C 1.46507 * 120.00087 * 89.99706 * 10 9 8 20 20 C 1.54266 * 110.03254 * 242.57987 * 19 10 9 21 21 C 1.54962 * 104.16081 * 217.13647 * 20 19 10 22 22 C 1.54889 * 102.77997 * 37.88795 * 21 20 19 23 23 C 1.53870 * 110.03320 * 125.36281 * 19 10 9 24 24 H 1.09001 * 109.47305 * 300.00186 * 1 2 3 25 25 H 1.08994 * 109.46896 * 60.00606 * 1 2 3 26 26 H 1.08999 * 109.46587 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.46751 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.46492 * 299.99823 * 3 2 1 29 29 H 1.08992 * 109.47191 * 59.99728 * 3 2 1 30 30 H 1.09001 * 109.47077 * 180.02562 * 6 2 1 31 31 H 1.08999 * 109.46922 * 59.99947 * 6 2 1 32 32 H 1.09005 * 109.47386 * 59.99532 * 7 6 2 33 33 H 1.09005 * 109.46829 * 300.00143 * 7 6 2 34 34 H 1.09005 * 109.47220 * 59.99274 * 8 7 6 35 35 H 1.08999 * 109.47126 * 300.00298 * 8 7 6 36 36 H 1.08992 * 109.47577 * 59.99651 * 9 8 7 37 37 H 1.09005 * 109.46754 * 299.99935 * 9 8 7 38 38 H 0.96997 * 119.99896 * 180.02562 * 14 13 11 39 39 H 1.08997 * 110.01725 * 3.97135 * 19 10 9 40 40 H 1.08997 * 110.48506 * 335.78556 * 20 19 10 41 41 H 1.09006 * 110.48623 * 98.42714 * 20 19 10 42 42 H 1.09001 * 110.72050 * 279.57458 * 21 20 19 43 43 H 1.09003 * 110.92406 * 156.29988 * 21 20 19 44 44 H 1.08997 * 110.48998 * 203.40959 * 22 21 20 45 45 H 1.09000 * 110.59508 * 80.81413 * 22 21 20 46 46 H 1.09002 * 110.03461 * 238.57223 * 23 19 10 47 47 H 1.09004 * 110.03262 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3994 -1.2295 -2.1293 6 6 2.0400 -0.7212 1.2493 7 6 1.5300 0.0000 2.4985 8 6 2.0404 -0.7207 3.7478 9 6 1.5299 0.0001 4.9969 10 7 2.0182 -0.6904 6.1931 11 6 1.2784 -1.6982 6.7519 12 1 1.7719 -2.5673 7.1613 13 6 -0.1059 -1.6028 6.7922 14 7 -0.8386 -2.6931 6.8735 15 14 -0.9287 0.0731 6.7310 16 1 -1.3081 0.3874 5.3300 17 1 -2.1456 0.0584 7.5819 18 1 0.0135 1.1058 7.2322 19 6 3.2981 -0.3028 6.7916 20 6 4.2869 -1.4856 6.7366 21 6 5.0704 -1.3870 8.0699 22 6 3.9787 -0.9482 9.0773 23 6 3.1024 0.0391 8.2790 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 0.4399 0.0001 2.4985 33 1 1.8933 1.0277 2.4984 34 1 3.1305 -0.7204 3.7476 35 1 1.6775 -1.7485 3.7480 36 1 0.4400 -0.0006 4.9970 37 1 1.8925 1.0281 4.9969 38 1 -1.8059 -2.6264 6.9013 39 1 3.7126 0.5553 6.2626 40 1 3.7477 -2.4313 6.6802 41 1 4.9622 -1.3792 5.8876 42 1 5.8566 -0.6352 8.0005 43 1 5.4871 -2.3548 8.3491 44 1 4.4295 -0.4502 9.9356 45 1 3.3890 -1.8058 9.4012 46 1 3.4227 1.0629 8.4721 47 1 2.0551 -0.0829 8.5555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232526543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:02 Heat of formation + Delta-G solvation = 14.246013 kcal Electronic energy + Delta-G solvation = -22335.923433 eV Core-core repulsion = 19325.163123 eV Total energy + Delta-G solvation = -3010.760310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.74166 -37.90690 -35.82836 -34.73971 -32.48934 -31.15718 -28.05951 -27.89231 -27.58474 -26.61797 -24.80162 -22.99536 -21.40183 -20.28482 -19.91773 -18.90256 -16.99085 -16.36863 -15.61130 -15.32426 -15.03447 -14.83965 -14.30536 -14.26954 -13.75479 -13.46988 -13.04117 -12.99814 -12.77514 -12.50427 -12.48783 -12.30131 -12.08231 -11.93437 -11.69243 -11.54881 -11.20255 -11.17622 -10.95292 -10.79460 -10.58858 -10.46151 -10.42809 -10.36273 -10.22500 -10.17028 -9.93993 -9.74370 -9.57498 -9.37531 -8.43977 -6.72530 -5.97470 -3.36156 2.68267 2.69017 3.30195 3.47798 3.53025 3.74377 4.54304 4.60656 4.67022 4.82383 4.97249 5.26610 5.28169 5.33108 5.38462 5.44392 5.46811 5.56519 5.61968 5.65366 5.66324 5.83136 5.87834 5.91767 6.02229 6.06431 6.13848 6.20571 6.24299 6.27632 6.29785 6.37022 6.44627 6.49541 6.50825 6.56152 6.61310 6.75816 6.92599 6.97115 7.07938 7.16654 7.21530 7.46931 8.11088 8.45449 9.06940 9.76939 10.19211 11.18463 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.016153 B = 0.004712 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.986179 B = 5940.727935 C = 6926.098770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.032 3.968 3 C -0.143 4.143 4 C 0.220 3.780 5 N -0.446 5.446 6 C -0.106 4.106 7 C -0.121 4.121 8 C -0.133 4.133 9 C 0.138 3.862 10 N -0.601 5.601 11 C -0.255 4.255 12 H 0.078 0.922 13 C 0.037 3.963 14 N -0.900 5.900 15 Si 0.870 3.130 16 H -0.286 1.286 17 H -0.304 1.304 18 H -0.269 1.269 19 C 0.173 3.827 20 C -0.134 4.134 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.134 4.134 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.261 0.739 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.007 8.639 -6.759 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 C -0.201 4.201 4 C -0.098 4.098 5 N -0.121 5.121 6 C -0.145 4.145 7 C -0.159 4.159 8 C -0.173 4.173 9 C 0.013 3.987 10 N -0.322 5.322 11 C -0.384 4.384 12 H 0.096 0.904 13 C -0.163 4.163 14 N -0.541 5.541 15 Si 0.700 3.300 16 H -0.214 1.214 17 H -0.233 1.233 18 H -0.194 1.194 19 C 0.066 3.934 20 C -0.173 4.173 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.173 4.173 24 H 0.102 0.898 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.406 7.750 -8.147 12.942 hybrid contribution -0.752 1.000 0.292 1.285 sum 5.654 8.750 -7.856 13.048 Atomic orbital electron populations 1.21969 0.91472 1.03486 1.03401 1.18410 0.96916 0.94895 0.86981 1.21949 1.01823 0.92940 1.03401 1.29323 0.92959 0.93257 0.94217 1.81180 1.09371 1.09654 1.11876 1.21692 1.01186 0.99809 0.91784 1.21720 1.01242 0.99304 0.93617 1.22124 1.00015 1.01222 0.93919 1.21179 0.98030 0.93381 0.86155 1.44306 1.20570 1.41103 1.26225 1.18607 0.87923 0.96113 1.35731 0.90446 1.25467 0.96513 0.96025 0.98292 1.69892 1.05280 1.27153 1.51755 0.87042 0.78636 0.87587 0.76718 1.21426 1.23256 1.19413 1.21030 0.86625 0.93829 0.91892 1.22837 0.97413 1.01860 0.95205 1.22436 0.97254 0.99766 0.96625 1.22240 0.96813 0.99515 0.96910 1.22546 1.01365 0.96621 0.96767 0.89757 0.92095 0.91559 0.91780 0.92099 0.89822 0.91217 0.90894 0.91490 0.91878 0.92985 0.91270 0.92948 0.94746 0.92873 0.93214 0.90393 0.93466 0.92756 0.92769 0.93361 0.91647 0.93907 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.08 37.16 0.30 -0.99 16 2 C 0.03 0.30 0.72 -157.29 -0.11 0.19 16 3 C -0.14 -1.12 8.08 37.16 0.30 -0.82 16 4 C 0.22 2.67 13.86 -20.76 -0.29 2.39 16 5 N -0.45 -6.55 18.54 42.15 0.78 -5.77 16 6 C -0.11 -1.17 4.23 -26.73 -0.11 -1.28 16 7 C -0.12 -1.50 4.51 -26.73 -0.12 -1.62 16 8 C -0.13 -2.19 5.54 -26.74 -0.15 -2.34 16 9 C 0.14 2.70 4.51 -4.05 -0.02 2.69 16 10 N -0.60 -13.10 2.02 -164.40 -0.33 -13.44 16 11 C -0.26 -6.61 8.19 -15.06 -0.12 -6.73 16 12 H 0.08 2.21 7.09 -52.49 -0.37 1.84 16 13 C 0.04 1.02 5.27 -17.43 -0.09 0.92 16 14 N -0.90 -26.39 13.97 55.49 0.78 -25.61 16 15 Si 0.87 21.13 25.19 -169.99 -4.28 16.84 16 16 H -0.29 -6.66 6.65 56.52 0.38 -6.28 16 17 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 C 0.17 3.26 3.42 -66.81 -0.23 3.04 16 20 C -0.13 -2.33 6.43 -25.03 -0.16 -2.50 16 21 C -0.12 -1.87 6.91 -24.70 -0.17 -2.04 16 22 C -0.12 -1.92 6.83 -25.07 -0.17 -2.10 16 23 C -0.13 -2.47 6.24 -25.61 -0.16 -2.63 16 24 H 0.08 0.72 6.43 -51.93 -0.33 0.38 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.60 6.43 -51.93 -0.33 0.26 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.86 6.43 -51.93 -0.33 0.52 16 33 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.05 1.14 3.44 -51.93 -0.18 0.96 16 37 H 0.03 0.61 7.91 -51.93 -0.41 0.20 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.05 0.86 7.81 -51.93 -0.41 0.46 16 40 H 0.08 1.58 6.65 -51.93 -0.35 1.23 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.08 1.73 7.17 -51.93 -0.37 1.36 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -29.26 361.47 -7.42 -36.68 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.50 Total: -0.33 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.31 Total: -13.83 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 1.22 Total: -44.82 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.28 Total: 16.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.26 -7.42 -36.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232526543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.922 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds