Wall clock time and date at job start Tue Mar 31 2020 00:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46894 * 2 1 4 4 C 1.47199 * 109.47124 * 239.99825 * 2 1 3 5 5 N 2.60794 * 109.47312 * 239.99799 * 2 1 3 6 6 C 1.53000 * 109.47075 * 119.99845 * 2 1 3 7 7 C 1.53001 * 109.47222 * 300.00227 * 6 2 1 8 8 C 1.52994 * 109.47680 * 180.02562 * 7 6 2 9 9 C 1.52991 * 109.47671 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47373 * 179.97438 * 9 8 7 11 11 C 1.36933 * 120.00240 * 270.00099 * 10 9 8 12 12 H 1.07997 * 120.00637 * 142.01152 * 11 10 9 13 13 C 1.38820 * 119.99728 * 322.00793 * 11 10 9 14 14 N 1.31617 * 120.00002 * 156.08926 * 13 11 10 15 15 Si 1.86802 * 120.00010 * 336.09427 * 13 11 10 16 16 H 1.48507 * 109.46917 * 95.28647 * 15 13 11 17 17 H 1.48496 * 109.46914 * 215.28529 * 15 13 11 18 18 H 1.48502 * 109.47090 * 335.29092 * 15 13 11 19 19 C 1.46507 * 120.00087 * 89.99706 * 10 9 8 20 20 C 1.54266 * 110.03254 * 242.57987 * 19 10 9 21 21 C 1.54962 * 104.16081 * 217.13647 * 20 19 10 22 22 C 1.54889 * 102.77997 * 37.88795 * 21 20 19 23 23 C 1.53870 * 110.03320 * 125.36281 * 19 10 9 24 24 H 1.09001 * 109.47305 * 300.00186 * 1 2 3 25 25 H 1.08994 * 109.46896 * 60.00606 * 1 2 3 26 26 H 1.08999 * 109.46587 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.46751 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.46492 * 299.99823 * 3 2 1 29 29 H 1.08992 * 109.47191 * 59.99728 * 3 2 1 30 30 H 1.09001 * 109.47077 * 180.02562 * 6 2 1 31 31 H 1.08999 * 109.46922 * 59.99947 * 6 2 1 32 32 H 1.09005 * 109.47386 * 59.99532 * 7 6 2 33 33 H 1.09005 * 109.46829 * 300.00143 * 7 6 2 34 34 H 1.09005 * 109.47220 * 59.99274 * 8 7 6 35 35 H 1.08999 * 109.47126 * 300.00298 * 8 7 6 36 36 H 1.08992 * 109.47577 * 59.99651 * 9 8 7 37 37 H 1.09005 * 109.46754 * 299.99935 * 9 8 7 38 38 H 0.96997 * 119.99896 * 180.02562 * 14 13 11 39 39 H 1.08997 * 110.01725 * 3.97135 * 19 10 9 40 40 H 1.08997 * 110.48506 * 335.78556 * 20 19 10 41 41 H 1.09006 * 110.48623 * 98.42714 * 20 19 10 42 42 H 1.09001 * 110.72050 * 279.57458 * 21 20 19 43 43 H 1.09003 * 110.92406 * 156.29988 * 21 20 19 44 44 H 1.08997 * 110.48998 * 203.40959 * 22 21 20 45 45 H 1.09000 * 110.59508 * 80.81413 * 22 21 20 46 46 H 1.09002 * 110.03461 * 238.57223 * 23 19 10 47 47 H 1.09004 * 110.03262 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3994 -1.2295 -2.1293 6 6 2.0400 -0.7212 1.2493 7 6 1.5300 0.0000 2.4985 8 6 2.0404 -0.7207 3.7478 9 6 1.5299 0.0001 4.9969 10 7 2.0182 -0.6904 6.1931 11 6 1.2784 -1.6982 6.7519 12 1 1.7719 -2.5673 7.1613 13 6 -0.1059 -1.6028 6.7922 14 7 -0.8386 -2.6931 6.8735 15 14 -0.9287 0.0731 6.7310 16 1 -1.3081 0.3874 5.3300 17 1 -2.1456 0.0584 7.5819 18 1 0.0135 1.1058 7.2322 19 6 3.2981 -0.3028 6.7916 20 6 4.2869 -1.4856 6.7366 21 6 5.0704 -1.3870 8.0699 22 6 3.9787 -0.9482 9.0773 23 6 3.1024 0.0391 8.2790 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 0.4399 0.0001 2.4985 33 1 1.8933 1.0277 2.4984 34 1 3.1305 -0.7204 3.7476 35 1 1.6775 -1.7485 3.7480 36 1 0.4400 -0.0006 4.9970 37 1 1.8925 1.0281 4.9969 38 1 -1.8059 -2.6264 6.9013 39 1 3.7126 0.5553 6.2626 40 1 3.7477 -2.4313 6.6802 41 1 4.9622 -1.3792 5.8876 42 1 5.8566 -0.6352 8.0005 43 1 5.4871 -2.3548 8.3491 44 1 4.4295 -0.4502 9.9356 45 1 3.3890 -1.8058 9.4012 46 1 3.4227 1.0629 8.4721 47 1 2.0551 -0.0829 8.5555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232526543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:02 Heat of formation + Delta-G solvation = -0.301203 kcal Electronic energy + Delta-G solvation = -22336.554248 eV Core-core repulsion = 19325.163123 eV Total energy + Delta-G solvation = -3011.391125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.73416 -39.31794 -36.98910 -36.11804 -34.07287 -32.81522 -29.33769 -29.22936 -28.22358 -28.21294 -26.02800 -24.43786 -22.86927 -21.43379 -21.14624 -20.54125 -18.26828 -17.79741 -17.18242 -16.86784 -16.19440 -15.83487 -15.73035 -15.27809 -15.04954 -14.77751 -14.41718 -14.34304 -13.97586 -13.91691 -13.82834 -13.49365 -13.14079 -12.98924 -12.87995 -12.62666 -12.53473 -12.46242 -12.25580 -12.03022 -11.93857 -11.79219 -11.71062 -11.69666 -11.56272 -11.44953 -11.38819 -11.21509 -11.12373 -11.00412 -10.44912 -8.54900 -8.08510 -5.42338 1.35703 1.48349 1.58760 1.71605 1.74185 2.51921 2.86107 3.16132 3.44834 3.83182 3.90217 4.00289 4.04727 4.07981 4.25590 4.31722 4.37119 4.58768 4.65691 4.72545 4.79468 4.83551 4.84554 4.92369 4.94639 4.97240 4.98747 5.00526 5.06268 5.06847 5.09743 5.15661 5.21848 5.25226 5.28705 5.34816 5.38879 5.47211 5.59384 5.62835 5.65510 5.69603 5.75595 6.09820 6.34350 6.52759 7.17498 7.82591 8.22573 9.12306 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.016153 B = 0.004712 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.986179 B = 5940.727935 C = 6926.098770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.038 3.962 3 C -0.142 4.142 4 C 0.241 3.759 5 N -0.495 5.495 6 C -0.102 4.102 7 C -0.112 4.112 8 C -0.122 4.122 9 C 0.129 3.871 10 N -0.612 5.612 11 C -0.227 4.227 12 H 0.035 0.965 13 C -0.022 4.022 14 N -0.954 5.954 15 Si 0.933 3.067 16 H -0.267 1.267 17 H -0.320 1.320 18 H -0.259 1.259 19 C 0.164 3.836 20 C -0.131 4.131 21 C -0.112 4.112 22 C -0.116 4.116 23 C -0.135 4.135 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.029 0.971 36 H 0.031 0.969 37 H 0.066 0.934 38 H 0.258 0.742 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.035 0.965 46 H 0.070 0.930 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.793 12.094 -7.470 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.035 3.965 3 C -0.200 4.200 4 C -0.076 4.076 5 N -0.170 5.170 6 C -0.141 4.141 7 C -0.150 4.150 8 C -0.162 4.162 9 C 0.005 3.995 10 N -0.334 5.334 11 C -0.357 4.357 12 H 0.052 0.948 13 C -0.217 4.217 14 N -0.599 5.599 15 Si 0.762 3.238 16 H -0.194 1.194 17 H -0.250 1.250 18 H -0.183 1.183 19 C 0.059 3.941 20 C -0.170 4.170 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.174 4.174 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.054 0.946 46 H 0.088 0.912 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.231 11.239 -8.879 16.520 hybrid contribution -1.201 -0.134 0.551 1.328 sum 7.029 11.106 -8.328 15.560 Atomic orbital electron populations 1.22012 0.90779 1.03188 1.04532 1.18514 0.97340 0.95725 0.84958 1.21993 1.02131 0.91195 1.04685 1.29799 0.91656 0.92141 0.94016 1.81200 1.11050 1.11205 1.13554 1.21597 1.01512 0.98991 0.91964 1.21646 1.01107 1.00373 0.91849 1.21940 1.00430 0.99090 0.94757 1.21346 0.96915 0.95054 0.86193 1.44447 1.21161 1.40397 1.27373 1.18361 0.87988 0.95667 1.33691 0.94755 1.26013 0.97260 0.98986 0.99444 1.70031 1.05227 1.29372 1.55306 0.86005 0.77004 0.83457 0.77315 1.19379 1.24997 1.18304 1.21308 0.85301 0.95207 0.92326 1.22745 0.97438 0.99255 0.97599 1.22407 0.97111 1.01173 0.94317 1.22224 0.96781 0.98280 0.98136 1.22533 0.99358 0.98694 0.96807 0.88879 0.90725 0.92671 0.91409 0.91047 0.88366 0.90622 0.92578 0.91711 0.88853 0.92007 0.95198 0.95135 0.91566 0.93328 0.90291 0.94509 0.91483 0.89650 0.92072 0.90577 0.94579 0.91182 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.08 71.98 0.58 -1.69 16 2 C 0.04 0.64 0.72 -53.98 -0.04 0.60 16 3 C -0.14 -1.68 8.08 71.98 0.58 -1.10 16 4 C 0.24 5.51 13.86 89.44 1.24 6.75 16 5 N -0.49 -14.22 18.54 20.00 0.37 -13.85 16 6 C -0.10 -2.04 4.23 30.59 0.13 -1.91 16 7 C -0.11 -2.46 4.51 30.59 0.14 -2.32 16 8 C -0.12 -3.86 5.54 30.59 0.17 -3.69 16 9 C 0.13 4.80 4.51 86.38 0.39 5.19 16 10 N -0.61 -26.36 2.02 -674.03 -1.36 -27.73 16 11 C -0.23 -12.21 8.19 84.04 0.69 -11.52 16 12 H 0.03 2.12 7.09 -2.91 -0.02 2.10 16 13 C -0.02 -1.23 5.27 84.86 0.45 -0.78 16 14 N -0.95 -58.88 13.97 21.65 0.30 -58.58 16 15 Si 0.93 44.37 25.19 68.60 1.73 46.10 16 16 H -0.27 -11.72 6.65 99.48 0.66 -11.06 16 17 H -0.32 -15.96 7.11 99.48 0.71 -15.25 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 19 C 0.16 5.85 3.42 45.71 0.16 6.01 16 20 C -0.13 -4.40 6.43 31.69 0.20 -4.19 16 21 C -0.11 -3.12 6.91 31.91 0.22 -2.90 16 22 C -0.12 -3.66 6.83 31.67 0.22 -3.44 16 23 C -0.13 -4.75 6.24 31.32 0.20 -4.55 16 24 H 0.09 1.31 6.43 -2.39 -0.02 1.29 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.91 6.43 -2.39 -0.02 0.90 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.49 6.43 -2.38 -0.02 1.47 16 33 H 0.09 1.54 6.43 -2.38 -0.02 1.53 16 34 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.03 1.28 3.44 -2.39 -0.01 1.27 16 37 H 0.07 2.05 7.91 -2.38 -0.02 2.03 16 38 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.08 2.38 7.81 -2.39 -0.02 2.36 16 40 H 0.04 1.53 6.65 -2.39 -0.02 1.51 16 41 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.04 1.72 7.17 -2.39 -0.02 1.71 16 Total: -1.00 -67.80 361.47 7.23 -60.57 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.87 Total: 13.03 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 5.32 Total: -19.54 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -0.69 Total: -100.16 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.73 Total: 46.10 kcal Total: -67.80 7.23 -60.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232526543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.270 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds