Wall clock time and date at job start Tue Mar 31 2020 00:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.46847 * 111.00044 * 66.04569 * 11 10 9 13 13 C 1.53055 * 109.52655 * 174.17700 * 12 11 10 14 14 C 1.53052 * 109.24969 * 59.07222 * 13 12 11 15 15 H 1.09001 * 109.42548 * 62.07556 * 14 13 12 16 16 C 1.53078 * 109.24155 * 302.30029 * 14 13 12 17 17 H 1.08998 * 109.58087 * 177.78056 * 16 14 13 18 18 C 1.53118 * 109.34383 * 297.89822 * 16 14 13 19 19 C 1.53091 * 109.23979 * 302.63014 * 18 16 14 20 20 C 1.53053 * 109.21746 * 57.82234 * 19 18 16 21 21 N 1.45744 * 109.45435 * 300.81845 * 20 19 18 22 22 C 1.46899 * 110.80984 * 185.99446 * 21 20 19 23 23 C 1.52994 * 117.50227 * 118.67456 * 22 21 20 24 24 C 1.52996 * 117.50024 * 50.00925 * 22 21 20 25 25 C 1.46844 * 110.99952 * 301.77262 * 11 10 9 26 26 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.08996 * 109.45948 * 294.19562 * 12 11 10 32 32 H 1.09001 * 109.45738 * 54.16830 * 12 11 10 33 33 H 1.09003 * 109.50640 * 179.00563 * 13 12 11 34 34 H 1.09001 * 109.51042 * 299.09298 * 13 12 11 35 35 H 1.09001 * 109.50767 * 62.55700 * 18 16 14 36 36 H 1.08997 * 109.50974 * 182.69750 * 18 16 14 37 37 H 1.08998 * 109.51562 * 177.74998 * 19 18 16 38 38 H 1.09009 * 109.51607 * 297.85020 * 19 18 16 39 39 H 1.08999 * 109.46943 * 60.61013 * 20 19 18 40 40 H 1.08995 * 109.47749 * 180.60960 * 20 19 18 41 41 H 1.09001 * 115.54591 * 264.34168 * 22 21 20 42 42 H 1.08998 * 117.49836 * 359.97438 * 23 22 21 43 43 H 1.09004 * 117.50305 * 145.02541 * 23 22 21 44 44 H 1.09003 * 117.49731 * 214.98198 * 24 22 21 45 45 H 1.09001 * 117.49801 * 359.97438 * 24 22 21 46 46 H 1.08994 * 109.47017 * 305.91288 * 25 11 10 47 47 H 1.08995 * 109.47329 * 65.90997 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 7 5.4906 -2.6364 0.0022 12 6 6.0169 -2.0788 1.2546 13 6 7.5400 -2.2274 1.2806 14 6 8.1392 -1.4930 0.0788 15 1 7.9050 -0.4308 0.1495 16 6 7.5401 -2.0618 -1.2099 17 1 7.9335 -1.5161 -2.0675 18 6 7.9099 -3.5427 -1.3306 19 6 9.4337 -3.6863 -1.3006 20 6 9.9716 -3.0781 -0.0032 21 7 9.5954 -1.6718 0.0661 22 6 10.2157 -1.0223 1.2286 23 6 11.1755 0.1386 0.9606 24 6 11.7207 -1.2141 1.4254 25 6 6.0168 -1.9155 -1.1638 26 1 -0.4849 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8752 -0.6803 -0.8888 29 1 3.6587 -3.1509 -0.8875 30 1 3.6580 -3.1497 0.8925 31 1 5.7538 -1.0231 1.3209 32 1 5.5854 -2.6144 2.1002 33 1 7.9320 -1.7975 2.2023 34 1 7.8036 -3.2839 1.2308 35 1 7.4757 -4.0953 -0.4974 36 1 7.5253 -3.9385 -2.2706 37 1 9.7009 -4.7421 -1.3460 38 1 9.8656 -3.1644 -2.1547 39 1 9.5466 -3.6074 0.8497 40 1 11.0576 -3.1684 0.0176 41 1 9.5944 -0.9655 2.1224 42 1 11.3470 0.4202 -0.0783 43 1 11.1861 0.9589 1.6783 44 1 12.0897 -1.2832 2.4487 45 1 12.2506 -1.8226 0.6925 46 1 5.5843 -2.3315 -2.0737 47 1 5.7554 -0.8602 -1.0869 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247024408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:25 Heat of formation + Delta-G solvation = 27.426758 kcal Electronic energy + Delta-G solvation = -23162.860768 eV Core-core repulsion = 20152.672018 eV Total energy + Delta-G solvation = -3010.188750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58344 -37.90238 -35.95125 -33.21982 -32.58688 -31.76289 -30.05505 -28.98267 -25.62473 -24.33082 -23.10299 -22.98478 -22.32649 -21.70545 -20.55190 -19.67239 -17.71371 -17.02913 -16.77162 -15.78950 -15.37690 -14.91350 -14.65068 -14.29985 -13.97607 -13.75251 -13.35676 -13.28034 -13.22379 -12.76126 -12.58167 -12.47879 -12.33029 -11.84075 -11.72811 -11.60553 -11.22195 -10.96475 -10.95304 -10.75038 -10.57729 -10.52004 -10.42686 -10.15297 -10.04519 -9.96391 -9.84368 -9.70958 -9.23508 -8.56322 -8.21640 -7.62730 -6.07617 -4.05646 3.26801 3.34610 3.37322 3.59149 3.69354 4.41604 4.43323 4.68475 4.74200 4.78886 4.84917 4.97812 5.08644 5.12375 5.20137 5.25863 5.34152 5.37258 5.43050 5.50267 5.54769 5.64994 5.73820 5.76819 5.82456 5.87111 5.95338 5.98982 6.00647 6.02894 6.08160 6.14426 6.24540 6.26099 6.31199 6.40439 6.49977 6.64524 6.72134 7.08927 7.11651 7.18424 7.23442 7.50506 7.66556 7.85083 8.50416 8.97488 9.55128 11.05810 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.004509 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.329556 B = 6207.865742 C = 6851.107228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.073 0.927 9 C -0.045 4.045 10 C 0.067 3.933 11 N -0.538 5.538 12 C 0.058 3.942 13 C -0.147 4.147 14 C 0.096 3.904 15 H 0.078 0.922 16 C -0.073 4.073 17 H 0.075 0.925 18 C -0.109 4.109 19 C -0.118 4.118 20 C 0.056 3.944 21 N -0.507 5.507 22 C 0.007 3.993 23 C -0.165 4.165 24 C -0.181 4.181 25 C 0.058 3.942 26 H 0.263 0.737 27 H 0.015 0.985 28 H 0.013 0.987 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.075 0.925 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.276 -4.494 0.888 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.084 4.084 10 C -0.060 4.060 11 N -0.261 5.261 12 C -0.071 4.071 13 C -0.186 4.186 14 C -0.012 4.012 15 H 0.096 0.904 16 C -0.092 4.092 17 H 0.093 0.907 18 C -0.146 4.146 19 C -0.155 4.155 20 C -0.071 4.071 21 N -0.229 5.229 22 C -0.102 4.102 23 C -0.203 4.203 24 C -0.218 4.218 25 C -0.071 4.071 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.094 0.906 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 23.464 -4.660 0.429 23.926 hybrid contribution -0.337 1.536 0.825 1.776 sum 23.127 -3.124 1.254 23.371 Atomic orbital electron populations 1.69912 1.06264 1.26871 1.51103 1.25025 0.94691 0.99080 0.94550 0.86796 0.80259 0.83813 0.78499 1.20275 1.21339 1.19316 1.21049 0.89288 0.94495 1.50807 0.90923 1.20146 0.97856 0.94150 0.96204 1.22135 0.83751 0.98264 1.01838 1.62281 1.09281 1.53187 1.01399 1.21949 0.93491 0.98499 0.93165 1.22264 0.96328 1.01806 0.98234 1.21645 0.85130 0.99574 0.94879 0.90402 1.21214 0.94641 0.96603 0.96755 0.90704 1.21546 0.94293 0.96131 1.02674 1.21624 0.96738 0.99729 0.97454 1.21893 0.99830 0.87843 0.97539 1.61357 1.09342 1.13854 1.38396 1.22465 0.91382 1.02271 0.94046 1.23068 1.03176 0.91512 1.02574 1.23089 0.95631 1.00914 1.02183 1.22082 0.93277 0.97253 0.94506 0.92725 0.96726 0.96896 0.91346 0.91504 0.94474 0.91087 0.92307 0.90706 0.90384 0.92205 0.91902 0.91695 0.94548 0.91211 0.88878 0.88315 0.89014 0.88941 0.88480 0.90613 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.05 -1.06 3.34 -27.89 -0.09 -1.16 16 10 C 0.07 1.33 5.29 -3.83 -0.02 1.31 16 11 N -0.54 -8.97 4.08 -234.63 -0.96 -9.92 16 12 C 0.06 0.91 5.05 -3.82 -0.02 0.89 16 13 C -0.15 -1.90 4.46 -26.68 -0.12 -2.02 16 14 C 0.10 1.23 2.23 -67.75 -0.15 1.08 16 15 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 16 C -0.07 -0.96 2.66 -90.47 -0.24 -1.20 16 17 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 18 C -0.11 -1.29 4.87 -26.62 -0.13 -1.42 16 19 C -0.12 -1.20 6.09 -26.66 -0.16 -1.36 16 20 C 0.06 0.58 4.96 -4.42 -0.02 0.56 16 21 N -0.51 -5.78 4.70 -219.72 -1.03 -6.81 16 22 C 0.01 0.07 5.13 -67.72 -0.35 -0.27 16 23 C -0.17 -1.54 10.46 -26.69 -0.28 -1.81 16 24 C -0.18 -1.54 9.67 -26.69 -0.26 -1.80 16 25 C 0.06 0.91 4.28 -3.80 -0.02 0.89 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.01 0.35 5.74 -51.93 -0.30 0.06 16 28 H 0.01 0.31 5.94 -51.93 -0.31 0.00 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 31 H 0.04 0.65 6.75 -51.93 -0.35 0.30 16 32 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 33 H 0.06 0.71 6.47 -51.93 -0.34 0.38 16 34 H 0.07 0.97 4.91 -51.93 -0.26 0.72 16 35 H 0.08 1.03 6.06 -51.93 -0.31 0.71 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.04 0.40 6.23 -51.93 -0.32 0.07 16 40 H 0.07 0.65 6.33 -51.93 -0.33 0.32 16 41 H 0.09 1.00 6.35 -51.93 -0.33 0.67 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.81 6.86 -51.93 -0.36 0.46 16 46 H 0.08 1.19 8.12 -51.93 -0.42 0.76 16 47 H 0.04 0.69 6.61 -51.93 -0.34 0.35 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -29.51 336.66 -11.29 -40.80 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.19 Total: 0.22 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.29 Total: -19.51 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -1.22 Total: -43.92 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.51 -11.29 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247024408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.231 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds