Wall clock time and date at job start Tue Mar 31 2020 00:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37669 * 126.49539 * 2 1 4 4 C 1.34377 * 106.94440 * 179.97438 * 3 2 1 5 5 N 1.34388 * 108.32254 * 0.02562 * 4 3 2 6 6 C 1.31194 * 109.30276 * 359.76094 * 5 4 3 7 7 N 1.38497 * 125.79096 * 180.26805 * 6 5 4 8 8 C 1.46957 * 111.00087 * 60.86953 * 7 6 5 9 9 C 1.53052 * 109.36828 * 176.81030 * 8 7 6 10 10 N 1.46955 * 109.36189 * 58.39735 * 9 8 7 11 11 C 1.46897 * 111.00011 * 176.81365 * 10 9 8 12 12 C 1.53000 * 109.46991 * 313.79875 * 11 10 9 13 13 C 1.53007 * 109.47287 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47441 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99831 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00237 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99718 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00002 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47185 * 90.00154 * 18 16 14 20 20 H 1.48506 * 109.47144 * 210.00192 * 18 16 14 21 21 H 1.48499 * 109.47233 * 330.00123 * 18 16 14 22 22 C 1.46960 * 110.88617 * 300.68234 * 10 9 8 23 23 C 1.46952 * 111.00338 * 297.06759 * 7 6 5 24 24 H 1.08997 * 109.47493 * 86.51234 * 1 2 3 25 25 H 1.09002 * 109.47317 * 326.51180 * 1 2 3 26 26 H 1.09000 * 109.46912 * 206.51253 * 1 2 3 27 27 H 1.07997 * 126.52623 * 359.94499 * 3 2 1 28 28 H 1.08006 * 125.83527 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.48751 * 296.77855 * 8 7 6 30 30 H 1.09003 * 109.49211 * 56.84043 * 8 7 6 31 31 H 1.08996 * 109.48742 * 298.43771 * 9 8 7 32 32 H 1.08991 * 109.49116 * 178.36568 * 9 8 7 33 33 H 1.08994 * 109.47304 * 73.80064 * 11 10 9 34 34 H 1.09006 * 109.47450 * 193.80198 * 11 10 9 35 35 H 1.09003 * 109.47254 * 300.00064 * 12 11 10 36 36 H 1.09000 * 109.47091 * 60.00506 * 12 11 10 37 37 H 1.09002 * 109.46591 * 300.00532 * 13 12 11 38 38 H 1.08994 * 109.46814 * 59.99777 * 13 12 11 39 39 H 0.97006 * 119.99558 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.48545 * 299.35856 * 22 10 9 41 41 H 1.08994 * 109.49499 * 179.28724 * 22 10 9 42 42 H 1.09007 * 109.48843 * 303.15308 * 23 7 6 43 43 H 1.08997 * 109.48878 * 63.19544 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2837 1.1067 0.0000 4 6 3.5500 0.6570 0.0006 5 7 3.5212 -0.6865 0.0004 6 6 2.2740 -1.0936 0.0048 7 7 1.8526 -2.4128 0.0113 8 6 2.3312 -3.1127 1.2116 9 6 1.7796 -4.5403 1.2206 10 7 2.2113 -5.2371 0.0008 11 6 1.7643 -6.6364 0.0077 12 6 2.0625 -7.2603 1.3725 13 6 1.5975 -8.7180 1.3795 14 6 1.8907 -9.3324 2.7239 15 1 2.3620 -8.7424 3.4961 16 6 1.5573 -10.6477 2.9683 17 7 0.9839 -11.3663 2.0278 18 14 1.9214 -11.4095 4.6345 19 1 0.7589 -11.2068 5.5361 20 1 2.1724 -12.8638 4.4698 21 1 3.1223 -10.7634 5.2224 22 6 1.7327 -4.5373 -1.1996 23 6 2.2843 -3.1097 -1.2084 24 1 -0.3634 0.0625 -1.0257 25 1 -0.3634 0.8571 0.5670 26 1 -0.3633 -0.9196 0.4587 27 1 1.9684 2.1396 -0.0008 28 1 4.4389 1.2706 0.0011 29 1 3.4207 -3.1439 1.2042 30 1 1.9882 -2.5848 2.1015 31 1 0.6906 -4.5092 1.2554 32 1 2.1567 -5.0705 2.0950 33 1 0.6920 -6.6762 -0.1835 34 1 2.2925 -7.1905 -0.7683 35 1 3.1349 -7.2205 1.5637 36 1 1.5342 -6.7064 2.1485 37 1 0.5252 -8.7582 1.1880 38 1 2.1261 -9.2717 0.6035 39 1 0.7490 -12.2917 2.1999 40 1 0.6431 -4.5061 -1.1921 41 1 2.0756 -5.0651 -2.0894 42 1 1.9070 -2.5795 -2.0829 43 1 3.3732 -3.1404 -1.2435 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269677415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:58 Heat of formation + Delta-G solvation = 77.651374 kcal Electronic energy + Delta-G solvation = -21570.215893 eV Core-core repulsion = 18458.664702 eV Total energy + Delta-G solvation = -3111.551191 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.16340 -39.18709 -35.94171 -34.10815 -33.48292 -31.52075 -30.86066 -29.17207 -27.50607 -26.74618 -25.08531 -23.68809 -22.38688 -21.61480 -20.70278 -19.85047 -19.32213 -17.70752 -16.39877 -16.09126 -15.87716 -14.98190 -14.93239 -14.72710 -14.61631 -14.40251 -14.23224 -13.95559 -13.57224 -13.06994 -13.05052 -12.80093 -12.31475 -12.26400 -11.66579 -11.41407 -11.23844 -11.20241 -10.91190 -10.81579 -10.49814 -10.31862 -10.25262 -9.78211 -9.63388 -9.32276 -9.03069 -8.94467 -8.55098 -8.32461 -8.04373 -5.97858 -3.99872 1.75850 2.36179 2.90193 3.33533 3.39750 3.43638 3.67730 4.11284 4.48577 4.52787 4.58154 4.78868 4.87092 5.06017 5.09806 5.19146 5.20577 5.34606 5.38093 5.42419 5.47403 5.54193 5.73543 5.76009 5.85357 5.90744 5.92628 6.04669 6.15184 6.30990 6.35448 6.60903 6.65067 6.70746 6.79086 7.09681 7.31922 7.35534 7.41596 7.70037 7.84976 7.89311 8.02523 8.45665 9.07324 9.64113 11.13619 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.036434 B = 0.002899 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.326239 B = 9656.146943 C = 9886.670054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.452 5.452 3 C -0.057 4.057 4 C -0.021 4.021 5 N -0.505 5.505 6 C 0.377 3.623 7 N -0.471 5.471 8 C 0.072 3.928 9 C 0.053 3.947 10 N -0.540 5.540 11 C 0.057 3.943 12 C -0.112 4.112 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.057 3.943 23 C 0.073 3.927 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.176 0.824 28 H 0.169 0.831 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.098 0.902 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.040 0.960 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 25.039 -6.394 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.136 5.136 3 C -0.189 4.189 4 C -0.170 4.170 5 N -0.227 5.227 6 C 0.025 3.975 7 N -0.197 5.197 8 C -0.055 4.055 9 C -0.075 4.075 10 N -0.265 5.265 11 C -0.070 4.070 12 C -0.150 4.150 13 C -0.015 4.015 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.071 4.071 23 C -0.054 4.054 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.193 0.807 28 H 0.186 0.814 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.937 24.338 -6.442 25.193 hybrid contribution -0.767 0.152 0.843 1.150 sum -1.704 24.490 -5.599 25.179 Atomic orbital electron populations 1.21978 0.76381 1.04753 1.03341 1.45569 1.07628 1.05992 1.54458 1.22661 0.91153 0.92065 1.13070 1.22176 0.96465 0.91021 1.07376 1.70789 1.18578 1.12350 1.20996 1.20923 0.84061 0.87408 1.05081 1.58935 1.59093 0.96417 1.05233 1.22242 0.99789 0.93496 0.89995 1.22290 0.98269 0.92212 0.94748 1.62271 1.59859 1.02969 1.01362 1.22291 0.97667 0.86352 1.00679 1.21794 1.00969 0.98959 0.93288 1.19064 0.96315 0.89048 0.97090 1.21250 1.39356 0.96321 0.98744 0.92695 1.25025 0.95304 0.97347 0.96840 1.69969 1.42111 1.08662 1.32866 0.86603 0.78674 0.78419 0.84367 1.20730 1.21242 1.19835 1.22155 0.97863 0.92675 0.94455 1.22171 1.00052 0.93355 0.89807 0.90801 0.90103 0.88739 0.80722 0.81376 0.91984 0.90671 0.94182 0.88432 0.95195 0.90916 0.92479 0.93186 0.96823 0.96530 0.93049 0.94208 0.89857 0.90827 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 11.15 59.84 0.67 1.18 16 2 N -0.45 -4.57 3.20 -124.92 -0.40 -4.97 16 3 C -0.06 -0.51 11.60 -16.29 -0.19 -0.69 16 4 C -0.02 -0.23 11.84 -17.80 -0.21 -0.44 16 5 N -0.51 -7.08 11.21 -13.92 -0.16 -7.23 16 6 C 0.38 4.82 6.32 -319.61 -2.02 2.80 16 7 N -0.47 -5.96 4.59 -174.52 -0.80 -6.76 16 8 C 0.07 0.96 5.51 -3.77 -0.02 0.94 16 9 C 0.05 0.76 4.93 -3.77 -0.02 0.74 16 10 N -0.54 -8.26 4.86 -234.48 -1.14 -9.39 16 11 C 0.06 0.99 5.28 -3.83 -0.02 0.97 16 12 C -0.11 -2.32 4.42 -26.73 -0.12 -2.43 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 22 C 0.06 0.74 5.58 -3.77 -0.02 0.72 16 23 C 0.07 0.91 5.53 -3.77 -0.02 0.89 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.68 8.04 -51.93 -0.42 0.27 16 27 H 0.18 0.91 8.06 -52.49 -0.42 0.48 16 28 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.94 8.13 -51.93 -0.42 0.51 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.48 5.99 -51.93 -0.31 1.17 16 33 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 1.00 6.26 -51.93 -0.33 0.68 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.83 8.13 -51.92 -0.42 0.40 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -32.81 346.04 -11.44 -44.25 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -7.35 Total: -3.02 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.52 Total: -8.47 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -1.76 Total: -54.79 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.81 -11.44 -44.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269677415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.902 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds