Wall clock time and date at job start Tue Mar 31 2020 00:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37669 * 126.49539 * 2 1 4 4 C 1.34377 * 106.94440 * 179.97438 * 3 2 1 5 5 N 1.34388 * 108.32254 * 0.02562 * 4 3 2 6 6 C 1.31194 * 109.30276 * 359.76094 * 5 4 3 7 7 N 1.38497 * 125.79096 * 180.26805 * 6 5 4 8 8 C 1.46957 * 111.00087 * 60.86953 * 7 6 5 9 9 C 1.53052 * 109.36828 * 176.81030 * 8 7 6 10 10 N 1.46955 * 109.36189 * 58.39735 * 9 8 7 11 11 C 1.46897 * 111.00011 * 176.81365 * 10 9 8 12 12 C 1.53000 * 109.46991 * 313.79875 * 11 10 9 13 13 C 1.53007 * 109.47287 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47441 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99831 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00237 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99718 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00002 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47185 * 90.00154 * 18 16 14 20 20 H 1.48506 * 109.47144 * 210.00192 * 18 16 14 21 21 H 1.48499 * 109.47233 * 330.00123 * 18 16 14 22 22 C 1.46960 * 110.88617 * 300.68234 * 10 9 8 23 23 C 1.46952 * 111.00338 * 297.06759 * 7 6 5 24 24 H 1.08997 * 109.47493 * 86.51234 * 1 2 3 25 25 H 1.09002 * 109.47317 * 326.51180 * 1 2 3 26 26 H 1.09000 * 109.46912 * 206.51253 * 1 2 3 27 27 H 1.07997 * 126.52623 * 359.94499 * 3 2 1 28 28 H 1.08006 * 125.83527 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.48751 * 296.77855 * 8 7 6 30 30 H 1.09003 * 109.49211 * 56.84043 * 8 7 6 31 31 H 1.08996 * 109.48742 * 298.43771 * 9 8 7 32 32 H 1.08991 * 109.49116 * 178.36568 * 9 8 7 33 33 H 1.08994 * 109.47304 * 73.80064 * 11 10 9 34 34 H 1.09006 * 109.47450 * 193.80198 * 11 10 9 35 35 H 1.09003 * 109.47254 * 300.00064 * 12 11 10 36 36 H 1.09000 * 109.47091 * 60.00506 * 12 11 10 37 37 H 1.09002 * 109.46591 * 300.00532 * 13 12 11 38 38 H 1.08994 * 109.46814 * 59.99777 * 13 12 11 39 39 H 0.97006 * 119.99558 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.48545 * 299.35856 * 22 10 9 41 41 H 1.08994 * 109.49499 * 179.28724 * 22 10 9 42 42 H 1.09007 * 109.48843 * 303.15308 * 23 7 6 43 43 H 1.08997 * 109.48878 * 63.19544 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2837 1.1067 0.0000 4 6 3.5500 0.6570 0.0006 5 7 3.5212 -0.6865 0.0004 6 6 2.2740 -1.0936 0.0048 7 7 1.8526 -2.4128 0.0113 8 6 2.3312 -3.1127 1.2116 9 6 1.7796 -4.5403 1.2206 10 7 2.2113 -5.2371 0.0008 11 6 1.7643 -6.6364 0.0077 12 6 2.0625 -7.2603 1.3725 13 6 1.5975 -8.7180 1.3795 14 6 1.8907 -9.3324 2.7239 15 1 2.3620 -8.7424 3.4961 16 6 1.5573 -10.6477 2.9683 17 7 0.9839 -11.3663 2.0278 18 14 1.9214 -11.4095 4.6345 19 1 0.7589 -11.2068 5.5361 20 1 2.1724 -12.8638 4.4698 21 1 3.1223 -10.7634 5.2224 22 6 1.7327 -4.5373 -1.1996 23 6 2.2843 -3.1097 -1.2084 24 1 -0.3634 0.0625 -1.0257 25 1 -0.3634 0.8571 0.5670 26 1 -0.3633 -0.9196 0.4587 27 1 1.9684 2.1396 -0.0008 28 1 4.4389 1.2706 0.0011 29 1 3.4207 -3.1439 1.2042 30 1 1.9882 -2.5848 2.1015 31 1 0.6906 -4.5092 1.2554 32 1 2.1567 -5.0705 2.0950 33 1 0.6920 -6.6762 -0.1835 34 1 2.2925 -7.1905 -0.7683 35 1 3.1349 -7.2205 1.5637 36 1 1.5342 -6.7064 2.1485 37 1 0.5252 -8.7582 1.1880 38 1 2.1261 -9.2717 0.6035 39 1 0.7490 -12.2917 2.1999 40 1 0.6431 -4.5061 -1.1921 41 1 2.0756 -5.0651 -2.0894 42 1 1.9070 -2.5795 -2.0829 43 1 3.3732 -3.1404 -1.2435 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269677415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:58 Heat of formation + Delta-G solvation = 57.121212 kcal Electronic energy + Delta-G solvation = -21571.106147 eV Core-core repulsion = 18458.664702 eV Total energy + Delta-G solvation = -3112.441445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.96474 -40.30562 -37.23606 -35.40344 -34.83048 -33.25566 -32.02597 -30.29228 -28.64070 -27.72886 -26.56304 -24.82185 -24.07504 -22.49737 -21.80946 -21.24504 -20.43555 -18.60932 -18.38758 -17.02211 -16.90860 -16.49265 -16.25284 -15.88490 -15.78632 -15.53866 -15.46428 -15.10507 -14.39179 -14.32648 -14.14818 -13.74336 -13.70550 -13.36501 -13.22828 -13.06698 -12.68275 -12.63902 -12.46655 -12.32621 -12.02450 -11.88905 -11.46650 -11.30854 -11.11609 -11.04368 -10.55451 -10.53978 -9.95742 -9.32873 -9.28063 -8.19435 -6.30138 0.98391 1.40418 1.41816 1.53128 1.61887 2.07639 2.41498 2.82698 2.89688 3.13881 3.70516 3.93689 3.96125 4.02028 4.11346 4.23399 4.25465 4.36371 4.41906 4.43906 4.47202 4.50567 4.69189 4.72058 4.73410 4.74948 4.84556 4.87117 4.91063 5.03815 5.12303 5.16967 5.25663 5.52014 5.53994 5.62497 5.75231 5.86462 5.90754 6.05515 6.12819 6.28085 6.49943 6.86807 7.08376 7.39035 8.92543 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.036434 B = 0.002899 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.326239 B = 9656.146943 C = 9886.670054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.450 5.450 3 C -0.034 4.034 4 C -0.051 4.051 5 N -0.543 5.543 6 C 0.348 3.652 7 N -0.465 5.465 8 C 0.083 3.917 9 C 0.057 3.943 10 N -0.548 5.548 11 C 0.070 3.930 12 C -0.096 4.096 13 C 0.027 3.973 14 C -0.542 4.542 15 H 0.059 0.941 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.964 3.036 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.264 1.264 22 C 0.060 3.940 23 C 0.082 3.918 24 H 0.086 0.914 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.217 0.783 28 H 0.186 0.814 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.056 0.944 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.263 0.737 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 27.080 -5.864 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.135 5.135 3 C -0.168 4.168 4 C -0.200 4.200 5 N -0.267 5.267 6 C -0.004 4.004 7 N -0.190 5.190 8 C -0.044 4.044 9 C -0.071 4.071 10 N -0.273 5.273 11 C -0.058 4.058 12 C -0.134 4.134 13 C -0.011 4.011 14 C -0.580 4.580 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.789 3.211 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.068 4.068 23 C -0.046 4.046 24 H 0.105 0.895 25 H 0.127 0.873 26 H 0.104 0.896 27 H 0.234 0.766 28 H 0.203 0.797 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.592 26.401 -5.917 27.102 hybrid contribution -0.574 -0.384 0.637 0.939 sum -2.166 26.016 -5.280 26.635 Atomic orbital electron populations 1.22216 0.74312 1.05609 1.04630 1.45806 1.08922 1.05467 1.53287 1.23322 0.90260 0.93320 1.09865 1.22625 0.98339 0.90259 1.08730 1.70688 1.19855 1.14298 1.21819 1.20898 0.84488 0.87714 1.07296 1.58937 1.58644 0.96715 1.04678 1.22057 0.98347 0.93020 0.91025 1.22231 0.98291 0.92643 0.93936 1.62228 1.60249 1.02084 1.02726 1.22017 0.97630 0.87668 0.98437 1.21541 1.00336 0.95888 0.95643 1.18958 0.94618 0.92054 0.95460 1.21695 1.39475 0.97011 0.99831 0.92288 1.25973 0.94919 0.97931 1.01034 1.70097 1.43025 1.09120 1.35167 0.85461 0.78967 0.77419 0.79295 1.19673 1.20734 1.18833 1.22201 0.98165 0.92791 0.93620 1.22078 0.98764 0.93177 0.90555 0.89507 0.87345 0.89602 0.76618 0.79741 0.94068 0.89851 0.93948 0.89510 0.95179 0.91107 0.93035 0.92518 0.98995 0.98985 0.92777 0.93618 0.88823 0.89323 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 11.15 127.77 1.42 2.19 16 2 N -0.45 -8.07 3.20 -549.12 -1.76 -9.82 16 3 C -0.03 -0.51 11.60 82.89 0.96 0.45 16 4 C -0.05 -1.04 11.84 83.42 0.99 -0.05 16 5 N -0.54 -15.04 11.21 -197.94 -2.22 -17.26 16 6 C 0.35 8.56 6.32 260.37 1.65 10.21 16 7 N -0.46 -11.44 4.59 -706.06 -3.24 -14.67 16 8 C 0.08 2.21 5.51 86.31 0.48 2.68 16 9 C 0.06 1.63 4.93 86.31 0.43 2.06 16 10 N -0.55 -16.63 4.86 -895.74 -4.35 -20.98 16 11 C 0.07 2.44 5.28 86.30 0.46 2.90 16 12 C -0.10 -4.03 4.42 30.60 0.14 -3.90 16 13 C 0.03 1.43 4.97 29.85 0.15 1.58 16 14 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 17 N -0.93 -57.44 13.29 21.44 0.28 -57.15 16 18 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 22 C 0.06 1.50 5.58 86.31 0.48 1.98 16 23 C 0.08 1.98 5.53 86.31 0.48 2.46 16 24 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.09 1.07 8.04 -2.39 -0.02 1.05 16 27 H 0.22 1.24 8.06 -2.91 -0.02 1.21 16 28 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 2.64 5.99 -2.39 -0.01 2.62 16 33 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 34 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.28 6.26 -2.39 -0.01 2.27 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 39 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.09 1.88 8.13 -2.38 -0.02 1.86 16 43 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -71.65 346.04 0.02 -71.63 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.96 Total: 9.60 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 8.31 Total: -8.15 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -11.28 Total: -119.89 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -71.65 0.02 -71.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269677415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.755 kcal (2) G-P(sol) polarization free energy of solvation -71.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds