Wall clock time and date at job start Tue Mar 31 2020 00:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34948 * 126.03673 * 2 1 4 4 C 1.35323 * 107.74101 * 179.84150 * 3 2 1 5 5 C 1.50697 * 126.03754 * 180.16232 * 4 3 2 6 6 N 1.46898 * 109.47130 * 270.33570 * 5 4 3 7 7 C 1.46961 * 110.99864 * 293.79735 * 6 5 4 8 8 C 1.53048 * 109.36379 * 176.81123 * 7 6 5 9 9 N 1.46955 * 109.36326 * 58.40505 * 8 7 6 10 10 C 1.46901 * 111.00218 * 176.80917 * 9 8 7 11 11 C 1.53001 * 109.47133 * 293.79991 * 10 9 8 12 12 C 1.50702 * 109.47064 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00183 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00028 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99837 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00241 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47290 * 59.99935 * 16 14 12 18 18 H 1.48497 * 109.47422 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47153 * 299.99994 * 16 14 12 20 20 C 1.46953 * 110.88246 * 300.67434 * 9 8 7 21 21 C 1.46955 * 110.99967 * 170.00179 * 6 5 4 22 22 C 1.39866 * 107.91915 * 0.42581 * 4 3 2 23 23 N 1.30835 * 108.20661 * 359.73480 * 22 4 3 24 24 H 1.09001 * 109.47060 * 269.71710 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.71199 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.71282 * 1 2 3 27 27 H 1.07995 * 126.12877 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.46943 * 30.33244 * 5 4 3 29 29 H 1.09000 * 109.46997 * 150.33274 * 5 4 3 30 30 H 1.08993 * 109.48718 * 296.78104 * 7 6 5 31 31 H 1.09005 * 109.48696 * 56.84582 * 7 6 5 32 32 H 1.09001 * 109.49221 * 298.43633 * 8 7 6 33 33 H 1.09000 * 109.48951 * 178.36642 * 8 7 6 34 34 H 1.09005 * 109.47277 * 53.79666 * 10 9 8 35 35 H 1.08999 * 109.47561 * 173.79586 * 10 9 8 36 36 H 1.09000 * 109.47086 * 299.99658 * 11 10 9 37 37 H 1.09005 * 109.47066 * 60.00080 * 11 10 9 38 38 H 0.96997 * 119.99729 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.49448 * 299.36000 * 20 9 8 40 40 H 1.08997 * 109.51367 * 179.30294 * 20 9 8 41 41 H 1.09005 * 109.49146 * 303.15253 * 21 6 5 42 42 H 1.08994 * 109.49475 * 63.21992 * 21 6 5 43 43 H 1.08001 * 125.89598 * 179.71587 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6664 0.0036 5 6 4.7681 1.5451 0.0083 6 7 5.1655 1.8387 -1.3751 7 6 5.6158 0.6208 -2.0634 8 6 5.9443 0.9535 -3.5207 9 7 6.9829 1.9924 -3.5611 10 6 7.3804 2.2860 -4.9445 11 6 8.0716 1.0613 -5.5473 12 6 8.4789 1.3623 -6.9667 13 1 8.2663 2.3304 -7.3958 14 6 9.1237 0.4021 -7.7172 15 7 9.3830 -0.7766 -7.1946 16 14 9.6291 0.7754 -9.4763 17 1 10.5648 1.9284 -9.4885 18 1 10.2999 -0.4133 -10.0615 19 1 8.4239 1.1075 -10.2778 20 6 6.5327 3.2103 -2.8729 21 6 6.2041 2.8775 -1.4155 22 6 3.5346 -0.7322 -0.0041 23 7 2.2891 -1.1328 -0.0062 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3633 0.8926 -0.5094 26 1 -0.3634 -0.8874 -0.5183 27 1 1.9282 2.1193 0.0004 28 1 4.5444 2.4770 0.5276 29 1 5.5823 1.0309 0.5190 30 1 6.5063 0.2322 -1.5694 31 1 4.8251 -0.1288 -2.0308 32 1 5.0471 1.3166 -4.0220 33 1 6.3062 0.0578 -4.0255 34 1 6.4958 2.5301 -5.5327 35 1 8.0675 3.1321 -4.9534 36 1 8.9563 0.8172 -4.9591 37 1 7.3845 0.2152 -5.5385 38 1 9.8369 -1.4519 -7.7225 39 1 5.6421 3.5990 -3.3667 40 1 7.3230 3.9602 -2.9054 41 1 5.8423 3.7733 -0.9106 42 1 7.1013 2.5146 -0.9142 43 1 4.4054 -1.3711 -0.0079 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336697621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:44 Heat of formation + Delta-G solvation = 89.770808 kcal Electronic energy + Delta-G solvation = -21495.762643 eV Core-core repulsion = 18384.736991 eV Total energy + Delta-G solvation = -3111.025653 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32206 -38.87709 -35.70856 -33.49796 -32.86925 -31.16773 -30.56243 -29.55816 -27.75695 -26.20690 -24.25568 -23.39462 -22.80838 -21.17453 -20.27674 -20.19750 -19.29168 -16.94705 -16.52159 -15.88122 -15.35453 -14.95940 -14.70528 -14.59270 -14.48887 -14.25066 -13.76566 -13.72436 -13.33114 -13.01370 -12.81588 -12.51244 -12.41671 -12.14503 -11.82824 -11.58197 -11.18801 -10.94228 -10.91335 -10.79814 -10.59397 -10.45801 -10.34517 -9.77372 -9.51530 -9.29247 -9.08734 -8.57763 -8.28930 -8.13992 -7.63401 -5.95800 -3.98046 1.77592 2.38642 2.65456 3.35935 3.40158 3.42552 4.19887 4.33309 4.43118 4.61816 4.69695 4.85871 4.94065 5.11501 5.15796 5.18669 5.24213 5.39822 5.42347 5.55426 5.62147 5.63710 5.76045 5.79031 5.89976 6.01594 6.07835 6.21398 6.26951 6.40696 6.49913 6.52099 6.57814 6.86326 7.02502 7.17612 7.22879 7.57860 7.58549 7.64992 7.85296 7.95209 8.13205 8.48000 9.09067 9.65220 11.15578 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.026069 B = 0.003167 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.833705 B = 8839.447850 C = 9380.036103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.071 3.929 4 C -0.227 4.227 5 C 0.133 3.867 6 N -0.537 5.537 7 C 0.061 3.939 8 C 0.058 3.942 9 N -0.540 5.540 10 C 0.064 3.936 11 C 0.029 3.971 12 C -0.522 4.522 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.057 3.943 21 C 0.060 3.940 22 C 0.056 3.944 23 N -0.300 5.300 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.172 0.828 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.019 0.981 35 H 0.060 0.940 36 H 0.024 0.976 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.468 5.221 17.613 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.164 5.164 3 C -0.075 4.075 4 C -0.239 4.239 5 C 0.005 3.995 6 N -0.263 5.263 7 C -0.067 4.067 8 C -0.070 4.070 9 N -0.265 5.265 10 C -0.063 4.063 11 C -0.009 4.009 12 C -0.561 4.561 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.072 4.072 21 C -0.068 4.068 22 C -0.131 4.131 23 N -0.121 5.121 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.189 0.811 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.344 4.046 17.566 24.333 hybrid contribution 0.769 0.871 -1.092 1.595 sum -15.576 4.917 16.474 23.199 Atomic orbital electron populations 1.21817 0.74427 1.04476 1.03096 1.48448 1.06546 1.03970 1.57390 1.22273 0.90786 0.93169 1.01294 1.19926 0.94371 0.93600 1.15967 1.20241 0.92720 0.97209 0.89346 1.62219 1.39444 1.09872 1.14725 1.22184 0.98470 0.91500 0.94555 1.22145 0.92946 0.96839 0.95060 1.62260 1.38038 1.08009 1.18208 1.22309 0.97911 1.01212 0.84846 1.19081 0.95713 0.91572 0.94484 1.21169 1.37752 0.99293 0.97880 0.92887 1.24992 0.95956 0.95096 0.98273 1.69964 1.41839 1.04556 1.36899 0.86660 0.78751 0.77652 0.84933 1.20247 1.21294 1.20322 1.22101 0.98557 0.93109 0.93456 1.22136 0.92984 0.94648 0.97058 1.23825 0.95149 0.94703 0.99383 1.77358 1.01717 1.08250 1.24800 0.90966 0.89560 0.89392 0.81097 0.90613 0.94096 0.94146 0.90629 0.94987 0.89369 0.96276 0.92196 0.95797 0.96531 0.92970 0.94866 0.90818 0.90990 0.94112 0.80265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.47 59.85 0.69 1.31 16 2 N -0.38 -3.99 4.01 -68.16 -0.27 -4.27 16 3 C 0.07 0.71 11.40 -17.22 -0.20 0.51 16 4 C -0.23 -2.53 4.96 -105.05 -0.52 -3.05 16 5 C 0.13 1.43 5.45 -4.98 -0.03 1.40 16 6 N -0.54 -7.08 4.70 -235.91 -1.11 -8.19 16 7 C 0.06 0.91 5.38 -3.77 -0.02 0.89 16 8 C 0.06 1.05 5.41 -3.77 -0.02 1.03 16 9 N -0.54 -10.21 4.71 -234.46 -1.10 -11.32 16 10 C 0.06 1.39 4.90 -3.82 -0.02 1.38 16 11 C 0.03 0.77 4.91 -27.88 -0.14 0.63 16 12 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.06 0.87 5.61 -3.76 -0.02 0.85 16 21 C 0.06 0.77 5.61 -3.76 -0.02 0.75 16 22 C 0.06 0.67 10.55 -17.37 -0.18 0.49 16 23 N -0.30 -3.90 12.58 30.62 0.39 -3.51 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 29 H 0.04 0.44 8.12 -51.93 -0.42 0.01 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.10 6.15 -51.93 -0.32 0.78 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.76 6.34 -51.93 -0.33 1.43 16 34 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 35 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 36 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.02 0.46 6.49 -51.93 -0.34 0.12 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 41 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.18 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -33.36 345.06 -9.35 -42.71 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -7.27 Total: -3.47 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.89 Total: -7.57 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -1.37 Total: -53.78 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.36 -9.35 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336697621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.477 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds