Wall clock time and date at job start Tue Mar 31 2020 00:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46633 * 2 1 4 4 C 1.47197 * 109.47179 * 240.00218 * 2 1 3 5 5 N 2.60797 * 109.47178 * 239.99892 * 2 1 3 6 6 C 1.53000 * 109.46836 * 120.00023 * 2 1 3 7 7 C 1.53002 * 109.47116 * 299.99916 * 6 2 1 8 8 C 1.53002 * 109.46936 * 180.02562 * 7 6 2 9 9 C 1.53002 * 109.46936 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47016 * 181.72507 * 9 8 7 11 11 C 1.46900 * 110.99732 * 76.25164 * 10 9 8 12 12 C 1.50697 * 109.46877 * 190.00135 * 11 10 9 13 13 H 1.07998 * 120.00274 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00063 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99676 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00337 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46965 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47537 * 120.00000 * 16 14 12 19 19 H 1.48497 * 109.47150 * 240.00091 * 16 14 12 20 20 C 1.46896 * 110.99861 * 200.19952 * 10 9 8 21 21 C 1.53006 * 109.46731 * 76.57782 * 20 10 9 22 22 C 1.53001 * 117.49923 * 244.79051 * 21 20 10 23 23 C 1.53001 * 60.00107 * 252.51401 * 22 21 20 24 24 H 1.09000 * 109.47198 * 299.99875 * 1 2 3 25 25 H 1.09000 * 109.47011 * 60.00623 * 1 2 3 26 26 H 1.09005 * 109.46662 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47290 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47301 * 299.99737 * 3 2 1 29 29 H 1.08999 * 109.47946 * 59.99948 * 3 2 1 30 30 H 1.09001 * 109.46562 * 180.02562 * 6 2 1 31 31 H 1.08997 * 109.47236 * 60.00324 * 6 2 1 32 32 H 1.08997 * 109.46860 * 60.00118 * 7 6 2 33 33 H 1.09001 * 109.46931 * 300.00284 * 7 6 2 34 34 H 1.09004 * 109.47265 * 60.00010 * 8 7 6 35 35 H 1.08997 * 109.46900 * 300.00092 * 8 7 6 36 36 H 1.09000 * 109.46832 * 61.72781 * 9 8 7 37 37 H 1.08997 * 109.47410 * 301.72524 * 9 8 7 38 38 H 1.09009 * 109.47183 * 309.99507 * 11 10 9 39 39 H 1.09001 * 109.47421 * 69.99889 * 11 10 9 40 40 H 0.97012 * 120.00062 * 180.02562 * 15 14 12 41 41 H 1.09006 * 109.47142 * 196.57037 * 20 10 9 42 42 H 1.08997 * 109.47495 * 316.57842 * 20 10 9 43 43 H 1.09001 * 115.55425 * 30.50360 * 21 20 10 44 44 H 1.09007 * 117.49622 * 0.02562 * 22 21 20 45 45 H 1.08993 * 117.50106 * 145.01976 * 22 21 20 46 46 H 1.08998 * 117.49722 * 252.50559 * 23 22 21 47 47 H 1.08997 * 117.49587 * 107.49199 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0208 -0.6938 -1.2019 5 7 2.3994 -1.2294 -2.1294 6 6 2.0400 -0.7213 1.2493 7 6 1.5300 0.0000 2.4985 8 6 2.0405 -0.7209 3.7477 9 6 1.5310 0.0007 4.9970 10 7 2.0548 -0.6670 6.1961 11 6 3.4671 -0.3262 6.4137 12 6 4.0360 -1.2089 7.4945 13 1 3.4109 -1.9487 7.9723 14 6 5.3546 -1.0720 7.8735 15 7 6.1159 -0.1714 7.2913 16 14 6.0596 -2.1656 9.2137 17 1 5.0052 -3.0888 9.7049 18 1 7.1920 -2.9540 8.6648 19 1 6.5419 -1.3231 10.3374 20 6 1.2460 -0.3383 7.3774 21 6 -0.0574 -1.1390 7.3418 22 6 -1.3640 -0.3558 7.1997 23 6 -1.0023 -1.0039 8.5376 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7208 1.2494 31 1 1.6767 -1.7489 1.2492 32 1 0.4400 0.0000 2.4984 33 1 1.8933 1.0277 2.4984 34 1 3.1305 -0.7206 3.7476 35 1 1.6775 -1.7487 3.7479 36 1 0.4414 -0.0260 5.0130 37 1 1.8688 1.0369 4.9813 38 1 4.0243 -0.4787 5.4893 39 1 3.5464 0.7176 6.7177 40 1 7.0438 -0.0753 7.5577 41 1 1.8024 -0.5900 8.2803 42 1 1.0177 0.7275 7.3764 43 1 0.0019 -2.1123 6.8547 44 1 -1.2951 0.7299 7.1311 45 1 -2.1646 -0.8136 6.6187 46 1 -1.5650 -1.8881 8.8369 47 1 -0.6955 -0.3446 9.3495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336784836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:59 Heat of formation + Delta-G solvation = 23.996568 kcal Electronic energy + Delta-G solvation = -21549.870487 eV Core-core repulsion = 18539.532993 eV Total energy + Delta-G solvation = -3010.337494 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -38.83692 -37.85717 -36.05694 -35.35745 -33.04800 -32.08279 -28.28213 -27.66175 -27.35652 -25.45132 -23.93973 -22.37179 -21.95947 -20.63644 -20.12527 -19.56711 -17.04851 -16.51951 -15.48759 -15.35170 -15.02957 -14.82955 -14.42868 -14.08656 -13.95609 -13.70023 -13.53530 -13.12216 -13.02057 -12.56169 -12.32468 -12.27549 -12.02192 -11.79163 -11.73311 -11.62417 -11.47651 -11.34278 -11.25165 -10.95547 -10.80279 -10.70437 -10.62845 -10.48790 -10.45524 -10.11047 -10.06237 -9.54204 -9.44944 -9.09743 -8.42442 -7.21088 -6.02258 -4.02827 2.63379 2.64305 3.31145 3.39040 3.43808 3.67604 4.14233 4.42817 4.51490 4.59293 4.73190 4.82366 5.12972 5.15494 5.26843 5.28111 5.33962 5.36419 5.42375 5.49816 5.54941 5.57600 5.69595 5.77704 5.81008 5.82378 5.87383 5.92144 5.98707 6.06482 6.11837 6.16846 6.24818 6.25835 6.33876 6.40059 6.53660 6.67525 6.81110 6.85710 7.33035 7.37627 7.42281 7.83894 8.13745 8.25330 8.58849 9.05994 9.61547 11.08560 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.004016 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.010048 B = 6970.164513 C = 8720.508875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.033 3.967 3 C -0.145 4.145 4 C 0.219 3.781 5 N -0.444 5.444 6 C -0.108 4.108 7 C -0.118 4.118 8 C -0.113 4.113 9 C 0.058 3.942 10 N -0.536 5.536 11 C 0.192 3.808 12 C -0.506 4.506 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.286 1.286 20 C 0.091 3.909 21 C -0.129 4.129 22 C -0.191 4.191 23 C -0.186 4.186 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.033 0.967 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.089 0.911 42 H 0.019 0.981 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.941 3.382 -8.426 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 C -0.203 4.203 4 C -0.099 4.099 5 N -0.118 5.118 6 C -0.147 4.147 7 C -0.156 4.156 8 C -0.151 4.151 9 C -0.071 4.071 10 N -0.260 5.260 11 C 0.067 3.933 12 C -0.545 4.545 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.037 4.037 21 C -0.148 4.148 22 C -0.228 4.228 23 C -0.223 4.223 24 H 0.101 0.899 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.051 0.949 39 H 0.006 0.994 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.037 0.963 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.193 2.129 -9.918 16.642 hybrid contribution 0.478 0.507 1.153 1.348 sum -12.715 2.637 -8.764 15.666 Atomic orbital electron populations 1.21956 0.91580 1.03229 1.03386 1.18380 0.96763 0.94991 0.86955 1.21965 1.02170 0.92782 1.03382 1.29292 0.93072 0.93326 0.94260 1.81196 1.09145 1.09613 1.11856 1.21685 1.01779 0.99513 0.91703 1.21684 1.00756 0.99741 0.93389 1.21538 1.01731 0.99522 0.92302 1.22013 0.98468 0.95115 0.91454 1.61998 1.04865 1.57906 1.01193 1.19755 0.81798 0.94421 0.97307 1.21234 0.95459 1.18679 1.19090 0.91787 1.24976 0.97082 0.95630 0.96878 1.69968 1.07135 1.34296 1.42453 0.86497 0.79081 0.80527 0.81670 1.19630 1.21059 1.21183 1.21563 0.91704 0.94577 0.95864 1.22456 0.90565 1.01018 1.00756 1.23002 0.99950 0.99238 1.00627 1.22894 1.04513 1.02852 0.92065 0.89860 0.92058 0.91715 0.91556 0.92049 0.89829 0.90787 0.90962 0.91590 0.91492 0.91368 0.91655 0.92245 0.96031 0.94852 0.99431 0.93049 0.89303 0.96268 0.87421 0.89464 0.89590 0.89369 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.08 37.16 0.30 -0.65 16 2 C 0.03 0.27 0.72 -157.30 -0.11 0.16 16 3 C -0.14 -1.05 8.08 37.15 0.30 -0.75 16 4 C 0.22 2.46 13.86 -20.76 -0.29 2.17 16 5 N -0.44 -6.23 18.54 42.15 0.78 -5.45 16 6 C -0.11 -1.03 4.23 -26.73 -0.11 -1.14 16 7 C -0.12 -1.19 4.51 -26.73 -0.12 -1.31 16 8 C -0.11 -1.63 5.35 -26.73 -0.14 -1.77 16 9 C 0.06 0.95 4.81 -3.82 -0.02 0.93 16 10 N -0.54 -10.86 4.35 -236.07 -1.03 -11.89 16 11 C 0.19 4.80 4.54 -4.98 -0.02 4.78 16 12 C -0.51 -13.84 8.22 -34.44 -0.28 -14.12 16 13 H 0.06 1.75 7.32 -52.49 -0.38 1.36 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.09 1.70 5.06 -3.82 -0.02 1.68 16 21 C -0.13 -1.98 5.22 -90.61 -0.47 -2.45 16 22 C -0.19 -2.41 10.04 -26.73 -0.27 -2.68 16 23 C -0.19 -2.44 10.25 -26.73 -0.27 -2.71 16 24 H 0.08 0.46 6.43 -51.93 -0.33 0.13 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.53 6.43 -51.93 -0.33 0.20 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.57 6.43 -51.93 -0.33 0.23 16 33 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 34 H 0.07 1.16 6.77 -51.93 -0.35 0.80 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.87 7.21 -51.93 -0.37 0.49 16 37 H 0.02 0.37 7.99 -51.93 -0.41 -0.05 16 38 H 0.03 0.89 6.64 -51.92 -0.34 0.54 16 39 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 40 H 0.26 7.20 8.31 -40.81 -0.34 6.86 16 41 H 0.09 1.87 6.58 -51.93 -0.34 1.53 16 42 H 0.02 0.35 7.72 -51.93 -0.40 -0.05 16 43 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.09 1.08 8.04 -51.93 -0.42 0.66 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -30.23 375.43 -9.08 -39.31 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.57 Total: -2.06 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -1.63 Total: -16.41 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.49 Total: -42.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.23 -9.08 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336784836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.305 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds