Wall clock time and date at job start Tue Mar 31 2020 00:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46633 * 2 1 4 4 C 1.47197 * 109.47179 * 240.00218 * 2 1 3 5 5 N 2.60797 * 109.47178 * 239.99892 * 2 1 3 6 6 C 1.53000 * 109.46836 * 120.00023 * 2 1 3 7 7 C 1.53002 * 109.47116 * 299.99916 * 6 2 1 8 8 C 1.53002 * 109.46936 * 180.02562 * 7 6 2 9 9 C 1.53002 * 109.46936 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47016 * 181.72507 * 9 8 7 11 11 C 1.46900 * 110.99732 * 76.25164 * 10 9 8 12 12 C 1.50697 * 109.46877 * 190.00135 * 11 10 9 13 13 H 1.07998 * 120.00274 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00063 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99676 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00337 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46965 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47537 * 120.00000 * 16 14 12 19 19 H 1.48497 * 109.47150 * 240.00091 * 16 14 12 20 20 C 1.46896 * 110.99861 * 200.19952 * 10 9 8 21 21 C 1.53006 * 109.46731 * 76.57782 * 20 10 9 22 22 C 1.53001 * 117.49923 * 244.79051 * 21 20 10 23 23 C 1.53001 * 60.00107 * 252.51401 * 22 21 20 24 24 H 1.09000 * 109.47198 * 299.99875 * 1 2 3 25 25 H 1.09000 * 109.47011 * 60.00623 * 1 2 3 26 26 H 1.09005 * 109.46662 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47290 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47301 * 299.99737 * 3 2 1 29 29 H 1.08999 * 109.47946 * 59.99948 * 3 2 1 30 30 H 1.09001 * 109.46562 * 180.02562 * 6 2 1 31 31 H 1.08997 * 109.47236 * 60.00324 * 6 2 1 32 32 H 1.08997 * 109.46860 * 60.00118 * 7 6 2 33 33 H 1.09001 * 109.46931 * 300.00284 * 7 6 2 34 34 H 1.09004 * 109.47265 * 60.00010 * 8 7 6 35 35 H 1.08997 * 109.46900 * 300.00092 * 8 7 6 36 36 H 1.09000 * 109.46832 * 61.72781 * 9 8 7 37 37 H 1.08997 * 109.47410 * 301.72524 * 9 8 7 38 38 H 1.09009 * 109.47183 * 309.99507 * 11 10 9 39 39 H 1.09001 * 109.47421 * 69.99889 * 11 10 9 40 40 H 0.97012 * 120.00062 * 180.02562 * 15 14 12 41 41 H 1.09006 * 109.47142 * 196.57037 * 20 10 9 42 42 H 1.08997 * 109.47495 * 316.57842 * 20 10 9 43 43 H 1.09001 * 115.55425 * 30.50360 * 21 20 10 44 44 H 1.09007 * 117.49622 * 0.02562 * 22 21 20 45 45 H 1.08993 * 117.50106 * 145.01976 * 22 21 20 46 46 H 1.08998 * 117.49722 * 252.50559 * 23 22 21 47 47 H 1.08997 * 117.49587 * 107.49199 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0208 -0.6938 -1.2019 5 7 2.3994 -1.2294 -2.1294 6 6 2.0400 -0.7213 1.2493 7 6 1.5300 0.0000 2.4985 8 6 2.0405 -0.7209 3.7477 9 6 1.5310 0.0007 4.9970 10 7 2.0548 -0.6670 6.1961 11 6 3.4671 -0.3262 6.4137 12 6 4.0360 -1.2089 7.4945 13 1 3.4109 -1.9487 7.9723 14 6 5.3546 -1.0720 7.8735 15 7 6.1159 -0.1714 7.2913 16 14 6.0596 -2.1656 9.2137 17 1 5.0052 -3.0888 9.7049 18 1 7.1920 -2.9540 8.6648 19 1 6.5419 -1.3231 10.3374 20 6 1.2460 -0.3383 7.3774 21 6 -0.0574 -1.1390 7.3418 22 6 -1.3640 -0.3558 7.1997 23 6 -1.0023 -1.0039 8.5376 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7208 1.2494 31 1 1.6767 -1.7489 1.2492 32 1 0.4400 0.0000 2.4984 33 1 1.8933 1.0277 2.4984 34 1 3.1305 -0.7206 3.7476 35 1 1.6775 -1.7487 3.7479 36 1 0.4414 -0.0260 5.0130 37 1 1.8688 1.0369 4.9813 38 1 4.0243 -0.4787 5.4893 39 1 3.5464 0.7176 6.7177 40 1 7.0438 -0.0753 7.5577 41 1 1.8024 -0.5900 8.2803 42 1 1.0177 0.7275 7.3764 43 1 0.0019 -2.1123 6.8547 44 1 -1.2951 0.7299 7.1311 45 1 -2.1646 -0.8136 6.6187 46 1 -1.5650 -1.8881 8.8369 47 1 -0.6955 -0.3446 9.3495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336784836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:58 Heat of formation + Delta-G solvation = 8.105150 kcal Electronic energy + Delta-G solvation = -21550.559591 eV Core-core repulsion = 18539.532993 eV Total energy + Delta-G solvation = -3011.026598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.71261 -39.15677 -37.21858 -36.49869 -34.78889 -33.52027 -29.63314 -29.00419 -28.19719 -26.69671 -25.27171 -23.74941 -23.05850 -21.87654 -21.22944 -20.93107 -18.56189 -17.81179 -16.87380 -16.63672 -16.30813 -15.83496 -15.59737 -15.33303 -15.22148 -15.00136 -14.56692 -14.36525 -14.00642 -13.87368 -13.53556 -13.41878 -13.20217 -13.12395 -12.83055 -12.69362 -12.65025 -12.52781 -12.35503 -12.23726 -12.15819 -12.07303 -11.89005 -11.71620 -11.51720 -11.45055 -11.20066 -11.14261 -10.92178 -10.62534 -10.51963 -8.90243 -8.17711 -6.26210 1.40612 1.41874 1.54873 1.72889 1.75590 2.41971 2.87571 3.02865 3.14785 3.35086 3.82429 3.91744 4.07007 4.09196 4.19495 4.20871 4.25840 4.35229 4.51257 4.60950 4.66805 4.75796 4.86566 4.87257 4.90180 4.93573 4.95673 5.01974 5.03580 5.05913 5.09217 5.13781 5.16314 5.26721 5.27858 5.36942 5.38285 5.42170 5.42832 5.51750 5.60491 5.65733 5.71858 6.14149 6.47218 6.54351 6.78798 6.91927 7.43332 8.93250 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.004016 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.010048 B = 6970.164513 C = 8720.508875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 C -0.146 4.146 4 C 0.240 3.760 5 N -0.497 5.497 6 C -0.106 4.106 7 C -0.105 4.105 8 C -0.108 4.108 9 C 0.059 3.941 10 N -0.543 5.543 11 C 0.210 3.790 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.962 3.038 17 H -0.264 1.264 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.096 3.904 21 C -0.150 4.150 22 C -0.166 4.166 23 C -0.179 4.179 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.014 0.986 38 H 0.010 0.990 39 H -0.044 1.044 40 H 0.263 0.737 41 H 0.054 0.946 42 H 0.021 0.979 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.551 3.447 -8.104 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.035 3.965 3 C -0.204 4.204 4 C -0.078 4.078 5 N -0.173 5.173 6 C -0.145 4.145 7 C -0.143 4.143 8 C -0.146 4.146 9 C -0.069 4.069 10 N -0.266 5.266 11 C 0.083 3.917 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.195 4.195 15 N -0.575 5.575 16 Si 0.788 3.212 17 H -0.188 1.188 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.033 4.033 21 C -0.169 4.169 22 C -0.203 4.203 23 C -0.217 4.217 24 H 0.120 0.880 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.033 0.967 38 H 0.028 0.972 39 H -0.027 1.027 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.119 0.881 44 H 0.111 0.889 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.828 2.194 -9.599 18.641 hybrid contribution 1.264 0.516 1.074 1.737 sum -14.564 2.710 -8.525 17.092 Atomic orbital electron populations 1.22003 0.89492 1.03735 1.04799 1.18526 0.98215 0.94959 0.84761 1.22014 1.01591 0.92075 1.04729 1.29884 0.91626 0.92155 0.94088 1.81210 1.10976 1.11355 1.13717 1.21616 1.00828 0.99789 0.92222 1.21598 1.02317 0.99367 0.91025 1.21479 0.99486 0.99903 0.93706 1.22138 0.99909 0.94508 0.90336 1.61970 1.02736 1.58647 1.03275 1.19365 0.84805 0.92106 0.95403 1.21526 0.95821 1.18763 1.19617 0.92191 1.25841 0.97486 0.96980 0.99182 1.70088 1.07520 1.35881 1.44001 0.85433 0.78321 0.78731 0.78759 1.18806 1.20571 1.20476 1.21480 0.92749 0.95281 0.93747 1.22172 0.90028 1.00883 1.03838 1.23084 0.97943 0.99370 0.99869 1.22999 1.03152 1.03595 0.91948 0.88032 0.91094 0.91711 0.92657 0.90873 0.88325 0.92496 0.90962 0.88705 0.90727 0.94957 0.91922 0.89397 0.96739 0.97189 1.02657 0.92840 0.92737 0.96116 0.88142 0.88934 0.87222 0.87637 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.08 71.98 0.58 -0.84 16 2 C 0.04 0.58 0.72 -53.99 -0.04 0.54 16 3 C -0.15 -1.83 8.08 71.98 0.58 -1.25 16 4 C 0.24 5.23 13.86 89.44 1.24 6.47 16 5 N -0.50 -14.03 18.54 20.00 0.37 -13.66 16 6 C -0.11 -1.90 4.23 30.59 0.13 -1.77 16 7 C -0.11 -1.92 4.51 30.60 0.14 -1.78 16 8 C -0.11 -3.09 5.35 30.60 0.16 -2.92 16 9 C 0.06 1.90 4.81 86.30 0.41 2.31 16 10 N -0.54 -22.50 4.35 -900.78 -3.92 -26.42 16 11 C 0.21 11.00 4.54 85.56 0.39 11.39 16 12 C -0.52 -29.35 8.22 25.60 0.21 -29.14 16 13 H 0.06 3.37 7.32 -2.91 -0.02 3.35 16 14 C 0.00 0.16 5.46 84.66 0.46 0.63 16 15 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 16 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 17 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 C 0.10 3.60 5.06 86.31 0.44 4.03 16 21 C -0.15 -4.38 5.22 -10.79 -0.06 -4.43 16 22 C -0.17 -3.58 10.04 30.59 0.31 -3.28 16 23 C -0.18 -4.25 10.25 30.60 0.31 -3.94 16 24 H 0.10 0.68 6.43 -2.39 -0.02 0.66 16 25 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.10 0.97 6.43 -2.39 -0.02 0.95 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.24 6.43 -2.39 -0.02 1.22 16 33 H 0.07 1.28 6.43 -2.39 -0.02 1.27 16 34 H 0.03 1.15 6.77 -2.39 -0.02 1.13 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 2.34 7.21 -2.39 -0.02 2.32 16 37 H 0.01 0.49 7.99 -2.39 -0.02 0.47 16 38 H 0.01 0.57 6.64 -2.38 -0.02 0.55 16 39 H -0.04 -2.55 8.12 -2.39 -0.02 -2.57 16 40 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 41 H 0.05 2.38 6.58 -2.38 -0.02 2.37 16 42 H 0.02 0.75 7.72 -2.39 -0.02 0.74 16 43 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.09 1.94 8.04 -2.38 -0.02 1.92 16 45 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -68.48 375.43 4.95 -63.53 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.91 Total: 9.91 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 5.27 Total: -23.98 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -3.26 Total: -95.96 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.48 4.95 -63.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336784836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.636 kcal (2) G-P(sol) polarization free energy of solvation -68.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds