Wall clock time and date at job start Tue Mar 31 2020 00:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53159 * 1 3 3 C 1.54186 * 107.73228 * 2 1 4 4 C 1.52692 * 109.59422 * 242.74661 * 2 1 3 5 5 N 1.46880 * 109.64841 * 289.10673 * 4 2 1 6 6 C 1.46900 * 110.97571 * 170.93688 * 5 4 2 7 7 C 1.53005 * 109.47487 * 188.50543 * 6 5 4 8 8 H 1.09004 * 109.46411 * 303.22488 * 7 6 5 9 9 C 1.47194 * 109.46819 * 63.22521 * 7 6 5 10 10 N 5.40194 * 62.01842 * 207.24154 * 2 1 3 11 11 C 1.52992 * 109.47195 * 183.22845 * 7 6 5 12 12 C 1.50700 * 109.47169 * 174.99791 * 11 7 6 13 13 H 1.08005 * 119.99639 * 359.97438 * 12 11 7 14 14 C 1.37878 * 120.00247 * 179.97438 * 12 11 7 15 15 N 1.31510 * 120.00072 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00005 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.46813 * 89.99984 * 16 14 12 18 18 H 1.48493 * 109.47007 * 210.00228 * 16 14 12 19 19 H 1.48497 * 109.46820 * 330.00277 * 16 14 12 20 20 C 1.46880 * 109.47878 * 293.77453 * 5 4 2 21 21 C 1.52683 * 109.69821 * 66.12520 * 20 5 4 22 22 C 1.54208 * 107.97084 * 188.19382 * 21 20 5 23 23 C 1.53162 * 109.60032 * 71.11643 * 21 20 5 24 24 C 1.51976 * 110.95716 * 118.47394 * 2 1 3 25 25 H 1.08999 * 109.46838 * 294.31858 * 1 2 3 26 26 H 1.08993 * 109.47536 * 54.32629 * 1 2 3 27 27 H 1.09000 * 109.46850 * 174.32667 * 1 2 3 28 28 H 1.09005 * 109.47592 * 180.12214 * 3 2 1 29 29 H 1.09002 * 109.47530 * 300.12623 * 3 2 1 30 30 H 1.09005 * 109.47388 * 60.12520 * 3 2 1 31 31 H 1.09070 * 109.59671 * 169.05690 * 4 2 1 32 32 H 1.09070 * 109.61436 * 49.15805 * 4 2 1 33 33 H 1.09002 * 109.46732 * 308.50231 * 6 5 4 34 34 H 1.08997 * 109.47319 * 68.49543 * 6 5 4 35 35 H 1.09005 * 109.47306 * 294.99907 * 11 7 6 36 36 H 1.08995 * 109.47391 * 54.99702 * 11 7 6 37 37 H 0.96995 * 120.00057 * 179.97438 * 15 14 12 38 38 H 1.09076 * 109.35731 * 305.88525 * 20 5 4 39 39 H 1.09082 * 109.32903 * 186.33068 * 20 5 4 40 40 H 1.08994 * 109.47294 * 181.61197 * 22 21 20 41 41 H 1.08998 * 109.47135 * 301.61683 * 22 21 20 42 42 H 1.09001 * 109.46568 * 61.61103 * 22 21 20 43 43 H 1.09001 * 109.47028 * 292.06466 * 23 21 20 44 44 H 1.08992 * 109.47263 * 52.06910 * 23 21 20 45 45 H 1.09005 * 109.47346 * 172.07059 * 23 21 20 46 46 H 1.10133 * 108.74104 * 319.16757 * 24 2 1 47 47 H 1.10150 * 108.69608 * 203.82655 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5316 0.0000 0.0000 3 6 2.0012 1.4686 0.0000 4 6 2.0437 -0.6587 -1.2788 5 7 1.7827 -2.1033 -1.2289 6 6 2.0652 -2.7338 -2.5253 7 6 1.5850 -4.1864 -2.5015 8 1 2.0638 -4.7137 -1.6763 9 6 0.1244 -4.2173 -2.3221 10 7 -1.0029 -4.2413 -2.1836 11 6 1.9513 -4.8663 -3.8221 12 6 1.5892 -6.3275 -3.7522 13 1 1.1429 -6.7309 -2.8553 14 6 1.8277 -7.1493 -4.8333 15 7 2.3717 -6.6583 -5.9253 16 14 1.3795 -8.9608 -4.7463 17 1 -0.0132 -9.1495 -5.2256 18 1 2.3079 -9.7420 -5.6023 19 1 1.4875 -9.4304 -3.3417 20 6 2.5896 -2.7102 -0.1621 21 6 2.1186 -2.1950 1.1958 22 6 3.1153 -2.6887 2.2639 23 6 0.7478 -2.7936 1.5252 24 6 2.0752 -0.6766 1.2475 25 1 -0.3633 0.4232 0.9365 26 1 -0.3634 0.5992 -0.8347 27 1 -0.3633 -1.0226 -0.1016 28 1 3.0907 1.5018 -0.0022 29 1 1.6206 1.9719 -0.8888 30 1 1.6243 1.9707 0.8911 31 1 3.1168 -0.4882 -1.3737 32 1 1.5335 -0.2289 -2.1417 33 1 1.5438 -2.1917 -3.3142 34 1 3.1382 -2.7088 -2.7154 35 1 1.4032 -4.3947 -4.6379 36 1 3.0222 -4.7654 -3.9980 37 1 2.5398 -7.2365 -6.6857 38 1 3.6384 -2.4491 -0.3090 39 1 2.4807 -3.7949 -0.1997 40 1 2.7860 -2.3580 3.2488 41 1 3.1608 -3.7776 2.2426 42 1 4.1038 -2.2797 2.0549 43 1 0.0013 -2.3899 0.8412 44 1 0.7896 -3.8775 1.4189 45 1 0.4769 -2.5391 2.5499 46 1 1.4648 -0.3693 2.1112 47 1 3.0928 -0.3006 1.4383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342377250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:48 Heat of formation + Delta-G solvation = -4.900717 kcal Electronic energy + Delta-G solvation = -22989.145053 eV Core-core repulsion = 19977.554479 eV Total energy + Delta-G solvation = -3011.590575 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09139 -36.85708 -34.97329 -34.75628 -33.38057 -31.40355 -27.74998 -27.20138 -26.67665 -26.64012 -26.37740 -24.40387 -21.81899 -21.47642 -19.89642 -17.99445 -16.64958 -16.45548 -15.62664 -15.07859 -14.78737 -14.53909 -14.39419 -14.29156 -13.75257 -13.35544 -13.27016 -12.85768 -12.54444 -12.41402 -12.20850 -12.08057 -12.01953 -11.82820 -11.79637 -11.60943 -11.52213 -11.38973 -11.17577 -11.02333 -10.87532 -10.68233 -10.58857 -10.55339 -10.40504 -10.26138 -10.10337 -9.89681 -9.49428 -9.18792 -8.44515 -8.11394 -6.08509 -4.11466 3.30583 3.37110 3.40331 3.78589 3.88700 4.03452 4.42278 4.52523 4.75320 4.77071 4.93387 4.99540 5.12084 5.17566 5.29786 5.34457 5.45542 5.53244 5.57177 5.58871 5.63762 5.65540 5.70679 5.78535 5.80494 5.86776 5.88912 5.92191 5.96660 6.01767 6.06978 6.10970 6.13825 6.23956 6.27967 6.40903 6.42524 6.44198 6.56600 6.71662 7.24694 7.28317 7.44468 7.54889 7.86878 8.24808 8.64390 8.93347 9.53963 11.02449 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.004309 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.614089 B = 6497.162349 C = 6753.010114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C -0.144 4.144 4 C 0.064 3.936 5 N -0.529 5.529 6 C 0.061 3.939 7 C 0.011 3.989 8 H 0.098 0.902 9 C 0.258 3.742 10 N -0.480 5.480 11 C 0.031 3.969 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.058 3.942 21 C -0.053 4.053 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.090 4.090 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.026 0.974 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.625 14.195 13.750 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.053 4.053 3 C -0.202 4.202 4 C -0.064 4.064 5 N -0.252 5.252 6 C -0.068 4.068 7 C -0.011 4.011 8 H 0.116 0.884 9 C -0.059 4.059 10 N -0.157 5.157 11 C -0.007 4.007 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.070 4.070 21 C -0.053 4.053 22 C -0.203 4.203 23 C -0.194 4.194 24 C -0.128 4.128 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.480 14.038 13.894 19.806 hybrid contribution 1.126 -0.923 -0.337 1.494 sum 2.606 13.114 13.557 19.041 Atomic orbital electron populations 1.21954 0.94044 1.03009 1.00428 1.20394 0.96305 0.94134 0.94512 1.22203 1.00701 0.95680 1.01625 1.22118 0.98349 0.88482 0.97445 1.62450 1.55254 1.02737 1.04733 1.22247 0.99658 0.94306 0.90598 1.19235 0.82683 0.95350 1.03859 0.88393 1.28798 0.94833 0.91025 0.91219 1.80972 1.13246 1.10598 1.10881 1.19165 0.97896 0.95042 0.88620 1.21138 1.41309 0.93532 1.00328 0.92544 1.24943 0.94907 0.98732 0.95322 1.69935 1.43162 1.35843 1.04131 0.86606 0.78374 0.85057 0.78137 1.20638 1.21120 1.19749 1.22263 0.94323 1.00000 0.90456 1.20393 0.96079 0.94518 0.94325 1.22206 0.98484 1.01343 0.98241 1.21943 0.96537 1.00514 1.00382 1.21363 1.00611 0.93977 0.96858 0.93618 0.93288 0.90827 0.92989 0.92655 0.92776 0.94915 0.90933 0.90247 0.93018 0.95607 0.94544 0.92824 0.94773 0.90057 0.92832 0.92404 0.92993 0.91182 0.92967 0.93760 0.92439 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.01 37.24 0.30 -1.23 16 2 C -0.05 -0.55 0.76 -154.48 -0.12 -0.66 16 3 C -0.14 -1.25 8.14 37.78 0.31 -0.94 16 4 C 0.06 0.74 4.06 -3.99 -0.02 0.73 16 5 N -0.53 -7.06 3.93 -234.92 -0.92 -7.99 16 6 C 0.06 0.91 4.32 -3.82 -0.02 0.89 16 7 C 0.01 0.20 2.13 -93.41 -0.20 0.00 16 8 H 0.10 1.73 6.26 -51.93 -0.32 1.40 16 9 C 0.26 5.39 13.62 -20.76 -0.28 5.11 16 10 N -0.48 -10.85 18.54 42.15 0.78 -10.06 16 11 C 0.03 0.73 4.42 -27.89 -0.12 0.60 16 12 C -0.52 -14.00 8.60 -34.44 -0.30 -14.30 16 13 H 0.06 1.50 7.59 -52.48 -0.40 1.11 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.06 0.71 3.92 -4.00 -0.02 0.70 16 21 C -0.05 -0.57 0.76 -154.47 -0.12 -0.69 16 22 C -0.14 -1.38 8.14 37.79 0.31 -1.07 16 23 C -0.14 -1.65 8.18 37.24 0.30 -1.35 16 24 C -0.09 -0.91 3.63 -27.77 -0.10 -1.01 16 25 H 0.04 0.46 8.02 -51.93 -0.42 0.04 16 26 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.07 0.99 5.48 -51.93 -0.28 0.70 16 28 H 0.05 0.43 8.06 -51.93 -0.42 0.01 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.37 7.96 -51.89 -0.41 -0.05 16 32 H 0.07 0.85 7.93 -51.89 -0.41 0.44 16 33 H 0.08 1.21 7.97 -51.93 -0.41 0.79 16 34 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.03 0.41 7.96 -51.89 -0.41 -0.01 16 39 H 0.08 1.09 5.97 -51.88 -0.31 0.78 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.46 8.06 -51.93 -0.42 0.05 16 43 H 0.07 0.96 5.38 -51.93 -0.28 0.68 16 44 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 45 H 0.04 0.47 8.13 -51.93 -0.42 0.05 16 46 H 0.06 0.56 7.86 -51.28 -0.40 0.16 16 47 H 0.05 0.50 7.58 -51.27 -0.39 0.12 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -28.99 362.44 -7.78 -36.76 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -8.65 Total: -4.08 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.16 Total: -11.59 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.59 Total: -42.89 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.99 -7.78 -36.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342377250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.864 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds